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X - Possible homology level

H - Homology level

T - Topology level

F - Family level

* - Provisional representative

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Evolutionary classification of protein domain structures

alpha arraysalpha-helix arrays with mainly perpendicular helices

alpha bundlesalpha-helix bundles with mainly parallel helices

alpha superhelicesrepeating alpha-helix hairpins form a superhelix

alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain

alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix

beta barrelssingle beta-sheet folded upon itself to form a barrel

beta meanderssingle beta-sheet with mainly meander topology

beta sandwichestwo beta-sheets stacked together to form a sandwich

beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain

beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander

a+b two layersone alpha-helix layer and one beta-sheet layer

X: LuxS, MPP, ThrRS/AlaRS common domain

looks like an elaborated ferredoxin

X: C-terminal domain in some PLP-dependent transferases
H: C-terminal domain in some PLP-dependent transferases
T: C-terminal domain in some PLP-dependent transferases
F: DegT_DnrJ_EryC1

PF01041 CL0061

Representatives:

e2fnuA1[A:247-372] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

aminotransferase ; ligands: PMP,UD1 ; X-RAY DIFFRACTION 1.5Å

e1mdoA1[A:260-384] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

ArnB aminotransferase ; ligands: PMP ; X-RAY DIFFRACTION 1.70Å

e2c7tA3[A:267-417] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

GLUTAMINE-2-DEOXY-SCYLLO-INOSOSE AMINOTRANSFERASE ; ligands: SO4 ; X-RAY DIFFRACTION 2.100Å

e2fn6A2[A:247-373] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

AMINOTRANSFERASE ; X-RAY DIFFRACTION 2.48Å

e4lc3A1[A:240-383] Image Pymol Jmol Links: PDB, SCOP, CATH

PUTATIVE UDP-4-AMINO-4-DEOXY-L-ARABINOSE--OXOGLUTARATE AMINOTRANSFERASE ; ligands: EDO,GOL ; X-RAY DIFFRACTION 1.6Å

e2c81A3[A:267-416] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

GLUTAMINE-2-DEOXY-SCYLLO-INOSOSE AMINOTRANSFERASE ; X-RAY DIFFRACTION 1.700Å

e4lc3B1[B:240-383] Image Pymol Jmol Links: PDB, SCOP, CATH

PUTATIVE UDP-4-AMINO-4-DEOXY-L-ARABINOSE--OXOGLUTARATE AMINOTRANSFERASE ; ligands: EDO,GOL ; X-RAY DIFFRACTION 1.6Å

e5k8bA2[A:252-319,A:342-395] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

8-amino-3,8-dideoxy-alpha-D-manno-octulosonate transaminase ; ligands: CL ; X-RAY DIFFRACTION 2.15Å

e5k8bB2[B:252-395] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

8-amino-3,8-dideoxy-alpha-D-manno-octulosonate transaminase ; ligands: CL,PDG ; X-RAY DIFFRACTION 2.15Å

e1mdxA3[A:249-384] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

ArnB aminotransferase ; ligands: PLP ; X-RAY DIFFRACTION 1.96Å

e5k8bD2[D:252-395] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

8-amino-3,8-dideoxy-alpha-D-manno-octulosonate transaminase ; ligands: CL,PDG ; X-RAY DIFFRACTION 2.15Å

e1mdzA3[A:249-383] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

ArnB aminotransferase ; ligands: DCS,PLP ; X-RAY DIFFRACTION 2.07Å

e5w71A2[A:267-415] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

L-glutamine:2-deoxy-scyllo-inosose aminotransferase ; ligands: PLP ; X-RAY DIFFRACTION 2.1Å

e3dr4A3[A:248-371] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative perosamine synthetase ; ligands: G4M ; X-RAY DIFFRACTION 1.6Å

e5w71B2[B:267-415] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

L-glutamine:2-deoxy-scyllo-inosose aminotransferase ; ligands: 9YM,CL ; X-RAY DIFFRACTION 2.1Å

e2fnuB3[B:247-374] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

aminotransferase ; ligands: PMP,UD1 ; X-RAY DIFFRACTION 1.5Å

e2fniB3[B:247-374] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

AMINOTRANSFERASE ; ligands: PLP ; X-RAY DIFFRACTION 3.0Å

e7mfpB1[B:248-352] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

L136 aminotransferase ; ligands: CL,Z7P ; X-RAY DIFFRACTION 1.85Å

e2fniA3[A:247-374] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

AMINOTRANSFERASE ; ligands: PLP ; X-RAY DIFFRACTION 3.0Å

e7mfoA2[A:248-352] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

L136 aminotransferase ; ligands: CL,EDO,PMP,PO4,TYD ; X-RAY DIFFRACTION 1.7Å

e7mfoC1[C:248-352] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

L136 aminotransferase ; ligands: PMP,TYD ; X-RAY DIFFRACTION 1.7Å

e2fn6B3[B:247-372] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

AMINOTRANSFERASE ; X-RAY DIFFRACTION 2.48Å

e7mfoG2[G:248-352] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

L136 aminotransferase ; ligands: PMP,TYD ; X-RAY DIFFRACTION 1.7Å

e2po3A3[A:1260-1395] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

4-DEHYDRASE ; ligands: T4K ; X-RAY DIFFRACTION 2.1Å

e7mfpD1[D:248-352] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

L136 aminotransferase ; ligands: CL,EDO,Z7P ; X-RAY DIFFRACTION 1.85Å

e2po3B3[B:2260-2395] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

4-DEHYDRASE ; ligands: T4K ; X-RAY DIFFRACTION 2.1Å

e3dr4C3[C:237-371] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative perosamine synthetase ; ligands: G4M ; X-RAY DIFFRACTION 1.6Å

e7mfqD1[D:248-352] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

L136 aminotransferase ; ligands: CL,EDO,T4K ; X-RAY DIFFRACTION 1.95Å

e2ogaB3[B:243-376] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

TRANSAMINASE ; ligands: EDO,PGU ; X-RAY DIFFRACTION 2.05Å

e7mfoE1[E:248-352] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

L136 aminotransferase ; ligands: PMP,TYD ; X-RAY DIFFRACTION 1.7Å

e7mfpA1[A:248-352] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

L136 aminotransferase ; ligands: CL,EDO,Z7P ; X-RAY DIFFRACTION 1.85Å

e2ogeC3[C:243-376] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

TRANSAMINASE ; ligands: CL,EDO ; X-RAY DIFFRACTION 2.05Å

e3bn1A3[A:237-371] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Perosamine synthetase ; ligands: AKG,NA ; X-RAY DIFFRACTION 1.8Å

e7mfpC2[C:248-352] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

L136 aminotransferase ; ligands: CL,Z7P ; X-RAY DIFFRACTION 1.85Å

e3dr4D3[D:237-371] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative perosamine synthetase ; ligands: G4M ; X-RAY DIFFRACTION 1.6Å

e7mfqA2[A:248-352] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

L136 aminotransferase ; ligands: CL,T4K ; X-RAY DIFFRACTION 1.95Å

e7mfqB2[B:248-352] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

L136 aminotransferase ; ligands: CL,T4K ; X-RAY DIFFRACTION 1.95Å

e3dr7D3[D:237-371] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative perosamine synthetase ; ligands: EDO,GPD ; X-RAY DIFFRACTION 1.700Å

e2ogaC3[C:243-376] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

TRANSAMINASE ; ligands: PGU ; X-RAY DIFFRACTION 2.05Å

e7mfqC1[C:248-352] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

L136 aminotransferase ; ligands: CL,T4K ; X-RAY DIFFRACTION 1.95Å

e2ogeA3[A:243-375] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

TRANSAMINASE ; ligands: CL,EDO ; X-RAY DIFFRACTION 2.05Å

e2ogeB3[B:243-376] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

TRANSAMINASE ; ligands: CL,EDO ; X-RAY DIFFRACTION 2.05Å

e2ogeD3[D:243-375] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

TRANSAMINASE ; ligands: CL,EDO ; X-RAY DIFFRACTION 2.05Å

e3bn1B3[B:237-371] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Perosamine synthetase ; X-RAY DIFFRACTION 1.8Å

e3dr7A3[A:237-371] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative perosamine synthetase ; ligands: GPD ; X-RAY DIFFRACTION 1.700Å

e3dr7C3[C:237-371] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative perosamine synthetase ; ligands: GPD ; X-RAY DIFFRACTION 1.700Å

e2ogaA3[A:243-377] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

TRANSAMINASE ; ligands: EDO,PGU ; X-RAY DIFFRACTION 2.05Å

e3dr7B3[B:237-371] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative perosamine synthetase ; ligands: EDO,GPD ; X-RAY DIFFRACTION 1.700Å

e2ogaD3[D:243-376] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

TRANSAMINASE ; ligands: EDO,PGU ; X-RAY DIFFRACTION 2.05Å

e3uwcA3[A:234-371] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Nucleotide-sugar aminotransferase ; ligands: DIO,EDO,NA ; X-RAY DIFFRACTION 1.800Å

e4ocaA3[A:249-384] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase ; ligands: 2QR ; X-RAY DIFFRACTION 2.3Å

e3bn1C3[C:247-371] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Perosamine synthetase ; X-RAY DIFFRACTION 1.8Å

e3dr4B3[B:247-371] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative perosamine synthetase ; ligands: EDO,G4M ; X-RAY DIFFRACTION 1.6Å

e3ju7B3[B:249-369] Image Pymol Jmol Links: PDB, SCOP, CATH

Putative PLP-dependent aminotransferase ; ligands: ACT,PEG ; X-RAY DIFFRACTION 2.19Å

e3ju7A3[A:249-369] Image Pymol Jmol Links: PDB, SCOP, CATH

Putative PLP-dependent aminotransferase ; ligands: ACT,PEG ; X-RAY DIFFRACTION 2.19Å

e4qgrA2[A:242-373] Image Pymol Jmol Links: PDB, SCOP, CATH

DEGT/DNRJ/ERYC1/STRS AMINOTRANSFERASE ; X-RAY DIFFRACTION 1.75Å

e4qgrB2[B:242-372] Image Pymol Jmol Links: PDB, SCOP, CATH

DEGT/DNRJ/ERYC1/STRS AMINOTRANSFERASE ; X-RAY DIFFRACTION 1.75Å

e3bn1D1[D:247-371] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Perosamine synthetase ; X-RAY DIFFRACTION 1.8Å

e4rxkB1[B:254-369] Image Pymol Jmol Links: PDB, SCOP, CATH Obsolete PDB

; ligands: GOL

e1o61A3[A:245-385] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

aminotransferase ; X-RAY DIFFRACTION 1.91Å

e1o62A3[A:245-385] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

aminotransferase ; ligands: BME ; X-RAY DIFFRACTION 2.10Å

e1o62B3[B:245-385] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

aminotransferase ; ligands: BME ; X-RAY DIFFRACTION 2.10Å

e1o69B3[B:245-385] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

aminotransferase ; ligands: BME,X04 ; X-RAY DIFFRACTION 1.85Å

e1o61B3[B:245-385] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

aminotransferase ; ligands: ACT ; X-RAY DIFFRACTION 1.91Å

e4xauB1[B:243-369] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative aminotransferase ; X-RAY DIFFRACTION 3.000Å

e4xauD1[D:243-369] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative aminotransferase ; X-RAY DIFFRACTION 3.000Å

e4xauC2[C:243-369] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative aminotransferase ; X-RAY DIFFRACTION 3.000Å

e4xauE2[E:243-369] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative aminotransferase ; X-RAY DIFFRACTION 3.000Å

e4xauF2[F:243-369] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative aminotransferase ; X-RAY DIFFRACTION 3.000Å

e4xauG2[G:243-369] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative aminotransferase ; X-RAY DIFFRACTION 3.000Å

e4rxkA2[A:243-369] Image Pymol Jmol Links: PDB, SCOP, CATH Obsolete PDB

; ligands: GOL

e4zasA1[A:251-384] Image Pymol Jmol Links: PDB, SCOP, CATH

CalS13 ; ligands: T46 ; X-RAY DIFFRACTION 2.47Å

e4zasB2[B:251-384] Image Pymol Jmol Links: PDB, SCOP, CATH

CalS13 ; ligands: SO4 ; X-RAY DIFFRACTION 2.47Å

e4zasC2[C:251-384] Image Pymol Jmol Links: PDB, SCOP, CATH

CalS13 ; X-RAY DIFFRACTION 2.47Å

e4zasD2[D:251-384] Image Pymol Jmol Links: PDB, SCOP, CATH

CalS13 ; X-RAY DIFFRACTION 2.47Å

e4zasE1[E:251-384] Image Pymol Jmol Links: PDB, SCOP, CATH

CalS13 ; X-RAY DIFFRACTION 2.47Å

e4zasF1[F:251-384] Image Pymol Jmol Links: PDB, SCOP, CATH

CalS13 ; X-RAY DIFFRACTION 2.47Å

e4zwvA1[A:254-369] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative aminotransferase ; ligands: GOL ; X-RAY DIFFRACTION 1.500Å

e4zwvB1[B:254-369] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative aminotransferase ; ligands: GOL ; X-RAY DIFFRACTION 1.500Å

e3nysA1[A:246-359] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Aminotransferase WbpE ; ligands: PLP ; X-RAY DIFFRACTION 1.45Å

e3frkB1[B:1-23,B:247-364] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

QDTB ; ligands: TQP ; X-RAY DIFFRACTION 2.15Å

e3frkA2[A:1-23,A:247-365] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

QDTB ; ligands: TQP ; X-RAY DIFFRACTION 2.15Å

e3nyuC2[C:246-358] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Aminotransferase WbpE ; X-RAY DIFFRACTION 1.5Å

e3nyuB1[B:246-358] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Aminotransferase WbpE ; ligands: EDO ; X-RAY DIFFRACTION 1.5Å

e3nyuD2[D:246-358] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Aminotransferase WbpE ; X-RAY DIFFRACTION 1.5Å

e3nyuA1[A:246-359] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Aminotransferase WbpE ; ligands: EDO ; X-RAY DIFFRACTION 1.5Å

e3nu8B1[B:246-359] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

AMINOTRANSFERASE WBPE ; X-RAY DIFFRACTION 1.5Å

e3nu8A2[A:246-358] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

AMINOTRANSFERASE WBPE ; X-RAY DIFFRACTION 1.5Å

e3nu7A1[A:246-359] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Aminotransferase WbpE ; ligands: PMP ; X-RAY DIFFRACTION 1.95Å

e3nu7B1[B:246-359] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Aminotransferase WbpE ; ligands: PMP ; X-RAY DIFFRACTION 1.95Å

e4zahC2[C:251-376] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

dTDP-4-amino-4,6-dideoxygalactose transaminase ; ligands: T5K ; X-RAY DIFFRACTION 2.240Å

e4zahF1[F:251-376] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

dTDP-4-amino-4,6-dideoxygalactose transaminase ; ligands: T5K ; X-RAY DIFFRACTION 2.240Å

e4zahA2[A:251-376] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

dTDP-4-amino-4,6-dideoxygalactose transaminase ; ligands: T5K ; X-RAY DIFFRACTION 2.240Å

e4zahD1[D:251-376] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

dTDP-4-amino-4,6-dideoxygalactose transaminase ; ligands: T5K ; X-RAY DIFFRACTION 2.240Å

e4zahH2[H:251-376] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

dTDP-4-amino-4,6-dideoxygalactose transaminase ; ligands: T5K ; X-RAY DIFFRACTION 2.240Å

e4zahG1[G:251-376] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

dTDP-4-amino-4,6-dideoxygalactose transaminase ; ligands: T5K ; X-RAY DIFFRACTION 2.240Å

e4zahB2[B:251-376] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

dTDP-4-amino-4,6-dideoxygalactose transaminase ; ligands: T5K ; X-RAY DIFFRACTION 2.240Å

e4zahE2[E:251-376] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

dTDP-4-amino-4,6-dideoxygalactose transaminase ; ligands: T5K ; X-RAY DIFFRACTION 2.240Å

e4wfpB2[B:251-376] Image Pymol Jmol Links: PDB, SCOP, CATH Obsolete PDB

e4wfpE1[E:251-376] Image Pymol Jmol Links: PDB, SCOP, CATH Obsolete PDB

e4wfpG2[G:251-376] Image Pymol Jmol Links: PDB, SCOP, CATH Obsolete PDB

e4wfpH1[H:251-376] Image Pymol Jmol Links: PDB, SCOP, CATH Obsolete PDB

e4wfpD1[D:251-376] Image Pymol Jmol Links: PDB, SCOP, CATH Obsolete PDB

e4wfpA2[A:251-376] Image Pymol Jmol Links: PDB, SCOP, CATH Obsolete PDB

e4wfpF1[F:251-376] Image Pymol Jmol Links: PDB, SCOP, CATH Obsolete PDB

e4wfpC1[C:251-376] Image Pymol Jmol Links: PDB, SCOP, CATH Obsolete PDB

e3bcxB2[B:308-437] Image Pymol Jmol Links: PDB, SCOP, CATH

CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase ; ligands: BEN ; X-RAY DIFFRACTION 2.400Å

e3bcxA2[A:308-437] Image Pymol Jmol Links: PDB, SCOP, CATH

CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase ; ligands: BEN ; X-RAY DIFFRACTION 2.400Å

e3bb8B2[B:308-437] Image Pymol Jmol Links: PDB, SCOP, CATH

CDP-4-keto-6-deoxy-D-glucose-3-dehydrase ; ligands: BEN ; X-RAY DIFFRACTION 2.350Å

e3bb8A2[A:308-437] Image Pymol Jmol Links: PDB, SCOP, CATH

CDP-4-keto-6-deoxy-D-glucose-3-dehydrase ; ligands: BEN,PLP ; X-RAY DIFFRACTION 2.350Å

e4piwD1[D:251-375] Image Pymol Jmol Links: PDB, SCOP, CATH

TDP-4-keto-6-deoxy-D-glucose transaminase family protein ; X-RAY DIFFRACTION 2.7Å

e4piwA1[A:251-375] Image Pymol Jmol Links: PDB, SCOP, CATH

TDP-4-keto-6-deoxy-D-glucose transaminase family protein ; X-RAY DIFFRACTION 2.7Å

e4piwF2[F:251-375] Image Pymol Jmol Links: PDB, SCOP, CATH

TDP-4-keto-6-deoxy-D-glucose transaminase family protein ; X-RAY DIFFRACTION 2.7Å

e4piwC1[C:251-376] Image Pymol Jmol Links: PDB, SCOP, CATH

TDP-4-keto-6-deoxy-D-glucose transaminase family protein ; X-RAY DIFFRACTION 2.7Å

e4piwB1[B:251-375] Image Pymol Jmol Links: PDB, SCOP, CATH

TDP-4-keto-6-deoxy-D-glucose transaminase family protein ; X-RAY DIFFRACTION 2.7Å

e4piwE2[E:251-375] Image Pymol Jmol Links: PDB, SCOP, CATH

TDP-4-keto-6-deoxy-D-glucose transaminase family protein ; X-RAY DIFFRACTION 2.7Å

e4piwG1[G:251-375] Image Pymol Jmol Links: PDB, SCOP, CATH

TDP-4-keto-6-deoxy-D-glucose transaminase family protein ; X-RAY DIFFRACTION 2.7Å

e4piwH1[H:251-375] Image Pymol Jmol Links: PDB, SCOP, CATH

TDP-4-keto-6-deoxy-D-glucose transaminase family protein ; X-RAY DIFFRACTION 2.7Å

e3nubA2[A:246-358] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

AMINOTRANSFERASE WBPE ; ligands: UD0 ; X-RAY DIFFRACTION 1.9Å

e3nubB2[B:246-358] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

AMINOTRANSFERASE WBPE ; ligands: UD0 ; X-RAY DIFFRACTION 1.9Å

e3nytA2[A:246-359] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Aminotransferase WbpE ; ligands: ULP ; X-RAY DIFFRACTION 1.30Å

e5k8bC2[C:252-334,C:354-395] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

8-amino-3,8-dideoxy-alpha-D-manno-octulosonate transaminase ; ligands: CL,PDG ; X-RAY DIFFRACTION 2.15Å

e5u1zA2[A:0-21,A:245-360] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative aminotransferase ; ligands: CL ; X-RAY DIFFRACTION 1.6Å

e5u1zB1[B:0-21,B:245-360] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative aminotransferase ; X-RAY DIFFRACTION 1.6Å

e5u1zC2[C:0-21,C:245-360] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative aminotransferase ; X-RAY DIFFRACTION 1.6Å

e5u1zD1[D:1-21,D:245-359] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative aminotransferase ; X-RAY DIFFRACTION 1.6Å

e5u20A2[A:0-21,A:245-360] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative aminotransferase ; ligands: CL ; X-RAY DIFFRACTION 1.5Å

e5u20B2[B:0-21,B:245-360] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative aminotransferase ; X-RAY DIFFRACTION 1.5Å

e5u20C2[C:0-21,C:245-360] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative aminotransferase ; X-RAY DIFFRACTION 1.5Å

e5u20D2[D:0-21,D:245-359] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative aminotransferase ; X-RAY DIFFRACTION 1.5Å

e5u21A1[A:0-21,A:245-360] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative aminotransferase ; ligands: CL,EDO,TQP ; X-RAY DIFFRACTION 1.6Å

e5u21B1[B:-1-21,B:245-360] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative aminotransferase ; ligands: EDO,TQP ; X-RAY DIFFRACTION 1.6Å

e5u21C1[C:0-21,C:245-360] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative aminotransferase ; ligands: TQP ; X-RAY DIFFRACTION 1.6Å

e5u21D2[D:0-21,D:245-360] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative aminotransferase ; ligands: EDO,TQP ; X-RAY DIFFRACTION 1.6Å

e5u23C1[C:0-21,C:245-360] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative aminotransferase ; ligands: CL,EDO,TQP ; X-RAY DIFFRACTION 1.45Å

e5u23A1[A:0-21,A:245-360] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative aminotransferase ; ligands: TQP ; X-RAY DIFFRACTION 1.45Å

e5u23B2[B:-6-21,B:245-360] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative aminotransferase ; ligands: EDO,TQP ; X-RAY DIFFRACTION 1.45Å

e5u24A1[A:0-21,A:245-360] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative aminotransferase ; ligands: 7SG,CL,EDO ; X-RAY DIFFRACTION 1.7Å

e5u24B2[B:-1-21,B:245-360] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative aminotransferase ; ligands: 7SG,EDO ; X-RAY DIFFRACTION 1.7Å

e5u24C2[C:0-21,C:245-360] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative aminotransferase ; ligands: 7SG ; X-RAY DIFFRACTION 1.7Å

e5u24D1[D:0-21,D:245-360] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative aminotransferase ; ligands: 7SG,EDO ; X-RAY DIFFRACTION 1.7Å

e5u23D2[D:245-360] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative aminotransferase ; ligands: EDO,TQP ; X-RAY DIFFRACTION 1.45Å

e5uidA1[A:249-381] Image Pymol Jmol Links: PDB, SCOP, CATH

Aminotransferase TlmJ ; ligands: PLP,SO4 ; X-RAY DIFFRACTION 2.18Å

e5uidB2[B:249-381] Image Pymol Jmol Links: PDB, SCOP, CATH

Aminotransferase TlmJ ; ligands: SO4 ; X-RAY DIFFRACTION 2.18Å

e5uidC1[C:249-381] Image Pymol Jmol Links: PDB, SCOP, CATH

Aminotransferase TlmJ ; ligands: PLP,SO4 ; X-RAY DIFFRACTION 2.18Å

e5uidD1[D:249-382] Image Pymol Jmol Links: PDB, SCOP, CATH

Aminotransferase TlmJ ; ligands: SO4 ; X-RAY DIFFRACTION 2.18Å

e6ewjB1[B:265-408] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative capsular polysaccharide biosynthesis protein ; X-RAY DIFFRACTION 1.9Å

e6ewjA1[A:265-404] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative capsular polysaccharide biosynthesis protein ; X-RAY DIFFRACTION 1.9Å

e6ewjD1[D:265-404] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative capsular polysaccharide biosynthesis protein ; X-RAY DIFFRACTION 1.9Å

e6ewjC2[C:265-408] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative capsular polysaccharide biosynthesis protein ; X-RAY DIFFRACTION 1.9Å

e6ewqA2[A:265-404] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative capsular polysaccharide biosynthesis protein ; ligands: PLP ; X-RAY DIFFRACTION 2.2Å

e6ewqB1[B:265-404] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative capsular polysaccharide biosynthesis protein ; ligands: PLP ; X-RAY DIFFRACTION 2.2Å

e6ewqC1[C:265-405] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative capsular polysaccharide biosynthesis protein ; ligands: PLP ; X-RAY DIFFRACTION 2.2Å

e6ewqD1[D:265-405] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative capsular polysaccharide biosynthesis protein ; ligands: PLP ; X-RAY DIFFRACTION 2.2Å

e6ewrA1[A:265-403] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative capsular polysaccharide biosynthesis protein ; ligands: PMP ; X-RAY DIFFRACTION 2.4Å

e6ewrB1[B:265-408] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative capsular polysaccharide biosynthesis protein ; ligands: PMP ; X-RAY DIFFRACTION 2.4Å

e6ewrC2[C:265-404] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative capsular polysaccharide biosynthesis protein ; ligands: PMP ; X-RAY DIFFRACTION 2.4Å

e6ewrD1[D:265-408] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative capsular polysaccharide biosynthesis protein ; ligands: PMP ; X-RAY DIFFRACTION 2.4Å

e6blgA1[A:251-376] Image Pymol Jmol Links: PDB, SCOP, CATH

dTDP-4-amino-4,6-dideoxygalactose transaminase ; ligands: CL,FMT,MES,SO4 ; X-RAY DIFFRACTION 2.10Å

e7l7xAAA2[AAA:258-399] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DegT/DnrJ/EryC1/StrS aminotransferase ; ligands: 4RA,EDO ; X-RAY DIFFRACTION 1.30Å

e7l7xBBB2[BBB:258-399] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DegT/DnrJ/EryC1/StrS aminotransferase ; ligands: 4RA,EDO ; X-RAY DIFFRACTION 1.30Å

e7kz3A3[A:316-443] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme ; ligands: EDO ; X-RAY DIFFRACTION 1.55Å

e7n63A2[A:1-22,A:246-362] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative aminotransferase ; ligands: EDO,TQP ; X-RAY DIFFRACTION 1.40Å

e7kzdE1[E:316-443] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme ; ligands: EDO,PLR ; X-RAY DIFFRACTION 1.9Å

e7kzdF3[F:316-443] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme ; ligands: EDO,PLR ; X-RAY DIFFRACTION 1.9Å

e7kz3B3[B:316-443] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme ; ligands: EDO ; X-RAY DIFFRACTION 1.55Å

e7kz3C3[C:316-443] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme ; ligands: EDO ; X-RAY DIFFRACTION 1.55Å

e7kz3D2[D:316-443] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme ; ligands: EDO ; X-RAY DIFFRACTION 1.55Å

e7kz5A3[A:316-443] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme ; ligands: EDO,O1G ; X-RAY DIFFRACTION 1.6Å

e7kz5B3[B:316-443] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme ; ligands: EDO,O1G ; X-RAY DIFFRACTION 1.6Å

e7kz5C3[C:316-443] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme ; ligands: EDO,O1G ; X-RAY DIFFRACTION 1.6Å

e7kz5D2[D:316-443] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme ; ligands: EDO,O1G ; X-RAY DIFFRACTION 1.6Å

e7kz6A2[A:316-443] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme ; ligands: EDO,PMP ; X-RAY DIFFRACTION 1.65Å

e7kz6B3[B:316-443] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme ; ligands: EDO,PMP ; X-RAY DIFFRACTION 1.65Å

e7kz6C2[C:316-443] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme ; ligands: EDO,PMP ; X-RAY DIFFRACTION 1.65Å

e7kz6D3[D:316-443] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme ; ligands: EDO,PMP ; X-RAY DIFFRACTION 1.65Å

e7kzdA2[A:316-443] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme ; ligands: EDO,PLR ; X-RAY DIFFRACTION 1.9Å

e7kzdB2[B:316-443] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme ; ligands: EDO,PLR ; X-RAY DIFFRACTION 1.9Å

e7kzdC1[C:316-443] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme ; ligands: EDO,GUA,PLR ; X-RAY DIFFRACTION 1.9Å

e7kzdD1[D:316-443] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme ; ligands: EDO,GUA,PLR ; X-RAY DIFFRACTION 1.9Å

e7kzdG1[G:316-443] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme ; ligands: EDO,PLR ; X-RAY DIFFRACTION 1.9Å

e7kzdH2[H:316-443] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme ; ligands: EDO,GUA,PLR ; X-RAY DIFFRACTION 1.9Å

e7b0dA2[A:246-367] Image Pymol Jmol Links: PDB, SCOP, CATH

Glutamine--scyllo-inositol transaminase ; ligands: EDO,PO4 ; X-RAY DIFFRACTION 1.27Å

e7b0dB2[B:246-367] Image Pymol Jmol Links: PDB, SCOP, CATH

Glutamine--scyllo-inositol transaminase ; ligands: EDO,PEG,PO4,TRS ; X-RAY DIFFRACTION 1.27Å

e7b0mAAA2[AAA:245-370] Image Pymol Jmol Links: PDB, SCOP, CATH

Sugar aminotransferase ; ligands: EDO,PEG ; X-RAY DIFFRACTION 1.43Å

e8e75A2[A:246-358] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DegT/DnrJ/EryC1/StrS aminotransferase ; ligands: EDO ; X-RAY DIFFRACTION 1.25Å

e8e77A1[A:246-358] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DegT/DnrJ/EryC1/StrS aminotransferase ; ligands: EDO,NA,ULP ; X-RAY DIFFRACTION 1Å

e8sngA2[A:243-377] Image Pymol Jmol Links: PDB, SCOP, CATH

UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase ; ligands: MG,NA,PLP,TRS ; X-RAY DIFFRACTION 1.55Å

e8snjA1[A:243-377] Image Pymol Jmol Links: PDB, SCOP, CATH

UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase ; ligands: PLP,TRS ; X-RAY DIFFRACTION 1.75Å

e8snjD2[D:243-377] Image Pymol Jmol Links: PDB, SCOP, CATH

UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase ; ligands: PLP,TRS ; X-RAY DIFFRACTION 1.75Å

e8snjF1[F:243-377] Image Pymol Jmol Links: PDB, SCOP, CATH

UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase ; ligands: PLP,TRS ; X-RAY DIFFRACTION 1.75Å

e8sngB2[B:243-377] Image Pymol Jmol Links: PDB, SCOP, CATH

UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase ; ligands: MG,NA,PLP,TRS ; X-RAY DIFFRACTION 1.55Å

e8snjC2[C:243-377] Image Pymol Jmol Links: PDB, SCOP, CATH

UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase ; ligands: PLP,TRS ; X-RAY DIFFRACTION 1.75Å

e8snjE1[E:243-377] Image Pymol Jmol Links: PDB, SCOP, CATH

UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase ; ligands: PLP,TRS ; X-RAY DIFFRACTION 1.75Å

e8snjB2[B:243-377] Image Pymol Jmol Links: PDB, SCOP, CATH

UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase ; ligands: PLP,TRS ; X-RAY DIFFRACTION 1.75Å

e8su6A2[A:250-384] Image Pymol Jmol Links: PDB, SCOP, CATH

UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase ; ligands: PLP,TRS ; X-RAY DIFFRACTION 1.50Å

e4k2mA2[A:309-440] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

NTD biosynthesis operon protein NtdA ; ligands: ACT,EDO,O1G ; X-RAY DIFFRACTION 1.710Å

e1o69A1[A:245-385] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

aminotransferase ; ligands: BME ; X-RAY DIFFRACTION 1.85Å

e1b9hA1[A:254-388] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

PROTEIN (3-AMINO-5-HYDROXYBENZOIC ACID SYNTHASE) ; X-RAY DIFFRACTION 2.0Å

F: Unmapped domains

Pseudo group of domains that do not map to PFam family profiles. Domains inside should not be considered as in one family.

X: ClpS-like

contains a HTH motif

a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers

a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers

a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers

a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain

a/b barrelsrepeating beta-alpha units form a barrel

a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers

mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions

few secondary structure elementsstabilized by cofactors or disulfides

extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes