Home Help

X - Possible homology level

H - Homology level

T - Topology level

F - Family level

* - Provisional representative

Keyword search

Evolutionary classification of protein domain structures

alpha arraysalpha-helix arrays with mainly perpendicular helices

alpha bundlesalpha-helix bundles with mainly parallel helices

alpha superhelicesrepeating alpha-helix hairpins form a superhelix

alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain

alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix

beta barrelssingle beta-sheet folded upon itself to form a barrel

beta meanderssingle beta-sheet with mainly meander topology

beta sandwichestwo beta-sheets stacked together to form a sandwich

beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain

beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander

a+b two layersone alpha-helix layer and one beta-sheet layer

X: LuxS, MPP, ThrRS/AlaRS common domain

looks like an elaborated ferredoxin

X: ClpS-like

contains a HTH motif

X: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
H: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
T: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
F: Unmapped domains

Pseudo group of domains that do not map to PFam family profiles. Domains inside should not be considered as in one family.

Representatives:

e3pkvA1[A:2-53] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Toxoflavin lyase (TflA) ; X-RAY DIFFRACTION 1.340Å

e3pkvA2[A:54-125] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Toxoflavin lyase (TflA) ; X-RAY DIFFRACTION 1.340Å

e3pkvA4[A:197-222] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Toxoflavin lyase (TflA) ; X-RAY DIFFRACTION 1.340Å

a deteriorated duplicate

e1kw3B2[B:56-132] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

2,3-Dihydroxybiphenyl dioxygenase ; ligands: MPD ; X-RAY DIFFRACTION 1.45Å

e5c68A1[A:59-121] * nonrep Image Pymol Jmol Links: PDB, SCOP, CATH

Glyoxalase/bleomycin resistance protein/dioxygenase ; ligands: NA,NI ; X-RAY DIFFRACTION 1.46Å

e1f1uA2[A:71-147] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

HOMOPROTOCATECHUATE 2,3-DIOXYGENASE ; X-RAY DIFFRACTION 1.5Å

e1f1uA3[A:148-207] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

HOMOPROTOCATECHUATE 2,3-DIOXYGENASE ; ligands: MN ; X-RAY DIFFRACTION 1.5Å

e1xrkA2[A:56-121] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Bleomycin resistance protein ; ligands: BLM,SO4 ; X-RAY DIFFRACTION 1.5Å

e3pkxA4[A:197-221] * nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Toxoflavin lyase (TflA) ; X-RAY DIFFRACTION 1.500Å

e1jifA1[A:1-54] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

bleomycin-binding protein ; ligands: BLM ; X-RAY DIFFRACTION 1.6Å

e1jifA2[A:55-122] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

bleomycin-binding protein ; ligands: BLM ; X-RAY DIFFRACTION 1.6Å

e2rk9A2[A:4-55] * nonrep Image Pymol Jmol Links: PDB, SCOP, CATH

Glyoxalase/bleomycin resistance protein/dioxygenase ; X-RAY DIFFRACTION 1.60Å

e1zswA2[A:72-144] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH

Glyoxalase family protein ; X-RAY DIFFRACTION 1.65Å

e1zswA3[A:145-213] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH

Glyoxalase family protein ; X-RAY DIFFRACTION 1.65Å

e1zswA4[A:214-314] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH

Glyoxalase family protein ; ligands: BME,ZN ; X-RAY DIFFRACTION 1.65Å

e1ecsA1[A:2-53] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

BLEOMYCIN RESISTANCE PROTEIN ; ligands: CA,PG4 ; X-RAY DIFFRACTION 1.7Å

e1ecsA2[A:54-121] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

BLEOMYCIN RESISTANCE PROTEIN ; ligands: PG4 ; X-RAY DIFFRACTION 1.7Å

e4lqbA2[A:-2-61] * nonrep Image Pymol Jmol Links: PDB, SCOP, CATH

Uncharacterized protein ; ligands: GOL ; X-RAY DIFFRACTION 1.72Å

e3oxhA20[A:135-196] * nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RV0577 PROTEIN ; ligands: XYL ; X-RAY DIFFRACTION 1.750Å

e1sqdA1[A:98-173] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

4-hydroxyphenylpyruvate dioxygenase ; X-RAY DIFFRACTION 1.8Å

e1sqdA2[A:270-410] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

4-hydroxyphenylpyruvate dioxygenase ; ligands: FE ; X-RAY DIFFRACTION 1.8Å

e1sqdA3[A:14-97] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

4-hydroxyphenylpyruvate dioxygenase ; X-RAY DIFFRACTION 1.8Å

e1sqdA4[A:181-266] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

4-hydroxyphenylpyruvate dioxygenase ; ligands: FE ; X-RAY DIFFRACTION 1.8Å

e1xqaA1[A:1-55] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH

GLYOXALASE/BLEOMYCIN RESISTANCE PROTEIN ; ligands: P6G ; X-RAY DIFFRACTION 1.8Å

e1xqaA2[A:56-112] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH

GLYOXALASE/BLEOMYCIN RESISTANCE PROTEIN ; ligands: MG,P6G ; X-RAY DIFFRACTION 1.8Å

e1r9cA1[A:1-61] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

GLUTATHIONE TRANSFERASE ; ligands: MN ; X-RAY DIFFRACTION 1.83Å

e1r9cA2[A:62-130] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

GLUTATHIONE TRANSFERASE ; ligands: MN ; X-RAY DIFFRACTION 1.83Å

e1ss4A1[A:1-80] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH

GLYOXALASE FAMILY PROTEIN ; ligands: ACT ; X-RAY DIFFRACTION 1.84Å

e1ss4A2[A:81-148] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH

GLYOXALASE FAMILY PROTEIN ; ligands: CIT,FMT,GSH,NA ; X-RAY DIFFRACTION 1.84Å

e2pjsA1[A:2-55] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH

UNCHARACTERIZED PROTEIN ATU1953 ; X-RAY DIFFRACTION 1.85Å

swap

e3iuzA1[A:1-206] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH

Putative glyoxalase superfamily protein ; ligands: P6G,PGE ; X-RAY DIFFRACTION 1.90Å

e3p8aA3[A:183-273] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH

UNCHARACTERIZED PROTEIN ; ligands: CL,GOL,PG4 ; X-RAY DIFFRACTION 1.95Å

e3ct8A6[A:-5-57] * nonrep Image Pymol Jmol Links: PDB, SCOP, CATH

Putative glyoxalase ; X-RAY DIFFRACTION 2.09Å

e1sqiA4[A:79-156] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

4-hydroxyphenylpyruvic acid dioxygenase ; X-RAY DIFFRACTION 2.15Å

e3sk1C2[C:6-63] * nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

EhpR ; X-RAY DIFFRACTION 2.15Å

e2r5vA7[A:2-59] * nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

PCZA361.1 ; X-RAY DIFFRACTION 2.150Å

e2i7rA1[A:1-55] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH

Conserved domain protein ; X-RAY DIFFRACTION 2.200Å

e3e0rA7[A:151-183] * nonrep Image Pymol Jmol Links: PDB, SCOP, CATH

C3-DEGRADING PROTEINASE (CPPA PROTEIN) ; X-RAY DIFFRACTION 2.3Å

e6on3D1[D:84-162] * nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

L-DOPA extradiol dioxygenase ; ligands: DAH,FE2 ; X-RAY DIFFRACTION 2.310Å

e5hmqA5[A:429-509] * nonrep Image Pymol Jmol Links: PDB, SCOP, CATH

4-hydroxyphenylpyruvate dioxygenase ; X-RAY DIFFRACTION 2.37Å

e6fb3A5[A:2593-2712] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Teneurin-2 ; ligands: NAG ; X-RAY DIFFRACTION 2.38Å

e4n04A2[A:2-54] * nonrep Image Pymol Jmol Links: PDB, SCOP, CATH

GLYOXALASE/BLEOMYCIN RESISTANCE PROTEIN/DIOXYGENASE ; ligands: NHE ; X-RAY DIFFRACTION 2.49Å

e2zw6A3[A:178-239] * nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

BLEOMYCIN ACETYLTRANSFERASE ; X-RAY DIFFRACTION 2.5Å

e4huzA7[A:76-137] * nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

2,6-DICHLORO-P-HYDROQUINONE 1,2-DIOXYGENASE ; X-RAY DIFFRACTION 2.6Å

e4huzA8[A:138-215] * nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

2,6-DICHLORO-P-HYDROQUINONE 1,2-DIOXYGENASE ; X-RAY DIFFRACTION 2.6Å

e1mpyA1[A:1-61] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

CATECHOL 2,3-DIOXYGENASE ; X-RAY DIFFRACTION 2.8Å

e1u6lA1[A:2-76] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH

hypothetical protein ; X-RAY DIFFRACTION 2.8Å

e1sp9A1[A:119-201] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

4-HYDROXYPHENYLPYRUVATE DIOXYGENASE ; X-RAY DIFFRACTION 3.0Å

e1sp9A2[A:202-290] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

4-HYDROXYPHENYLPYRUVATE DIOXYGENASE ; ligands: FE2 ; X-RAY DIFFRACTION 3.0Å

e1sp9A3[A:291-428] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

4-HYDROXYPHENYLPYRUVATE DIOXYGENASE ; ligands: FE2 ; X-RAY DIFFRACTION 3.0Å

e1sp9A4[A:33-118] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

4-HYDROXYPHENYLPYRUVATE DIOXYGENASE ; X-RAY DIFFRACTION 3.0Å

e3opyA2[A:118-186] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

6-phosphofructo-1-kinase alpha-subunit ; X-RAY DIFFRACTION 3.05Å

e3opyH1[H:5-68] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

6-phosphofructo-1-kinase beta-subunit ; X-RAY DIFFRACTION 3.05Å

e3opyB2[B:5-68] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

6-phosphofructo-1-kinase beta-subunit ; X-RAY DIFFRACTION 3.05Å

e3opyF6[F:5-68] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

6-phosphofructo-1-kinase beta-subunit ; X-RAY DIFFRACTION 3.05Å

e3opyD1[D:5-68] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

6-phosphofructo-1-kinase beta-subunit ; X-RAY DIFFRACTION 3.05Å

e3opyH2[H:69-155] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

6-phosphofructo-1-kinase beta-subunit ; X-RAY DIFFRACTION 3.05Å

a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers

a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers

a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers

a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain

a/b barrelsrepeating beta-alpha units form a barrel

a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers

mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions

few secondary structure elementsstabilized by cofactors or disulfides

extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes