Evolutionary classification of protein domain structures

alpha arraysalpha-helix arrays with mainly perpendicular helices

alpha bundlesalpha-helix bundles with mainly parallel helices

alpha superhelicesrepeating alpha-helix hairpins form a superhelix

alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain

alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix

beta barrelssingle beta-sheet folded upon itself to form a barrel

beta meanderssingle beta-sheet with mainly meander topology

beta sandwichestwo beta-sheets stacked together to form a sandwich

beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain

beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander

a+b two layersone alpha-helix layer and one beta-sheet layer

a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers

a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers

a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers

X: C-type lectin-like

X: Noncollagenous (NC1) domain of collagen IV

X: RNase A-like

X: Procyclic specific surface antigen-2

X: Helicase Cch N-terminal domain

X: Suppressor of hydroxyurea sensitivity protein 2

X: Immune Mapped Protein 2 (IMP2)

X: USP8 interacting domain

X: PA1123-like

X: Type III R-M system modification subunit target recognition domain

X: Hemolysin II

X: Outer capsid protein VP2 body domain

X: Mitoribosomal protein mS22

X: Putative lipoprotein BA_2398

X: Head and neck region of the ectodomain of paramyxoviruses fusion glycoprotein

X: S2 subunit of coronavirus spike glycoprotein

X: nsP3 zinc-binding domain

X: Herpesvirus UL21 N-terminal domain

X: Cysteine proteinases-like

X: Late protein H7

X: Lmo1499 protein N-terminal domains

X: Lysozyme-like

X: spore cortex-lytic enzyme catalytic domain

X: Nigritoxin N-terminal domain

X: Nigritoxin C-terminal domain

X: ADP-ribosylation

X: Tic22

X: Ribosomal protein TL5/L25 C-terminal domain-like

X: Zinc finger FYVE domain-containing protein 9 C-terminal domain

X: Argininosuccinate synthetase-C

X: LCCL domain

X: Aromatic aminoacid monoxygenases, catalytic and oligomerization domains

X: Methionine synthase activation domain-like

X: Nitric oxide (NO) synthase oxygenase domain

X: Metal cation-transporting ATPase, ATP-binding domain

X: Fibrinogen C-terminal domain-like

X: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain

X: LDH C-terminal domain-like

X: Diaminopimelate epimerase-like

X: Anchorless fibronectin/fibrinogen binding protein C-terminal domain

X: Yos9 dimerization domain

X: Peptide deformylase

X: YrdC/RibB

X: YbaK/ProRS associated domain

X: CoA-dependent acyltransferases

X: alpha/beta-Hammerhead/Barrel-sandwich hybrid

X: DNA mimic protein DMP12-like

X: Hypothetical protein HI1480

X: RuBisCo LSMT C-terminal, substrate-binding domain

X: 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain

X: Cell cycle regulatory proteins

X: Conserved core of transcriptional regulatory protein vp16

X: Nitrile hydratase alpha chain

X: Proguanylin

X: Rotavirus NSP2 fragment, N-terminal domain

X: VSV matrix protein

X: ssRNA bacteriophage MS2 maturation protein

X: YopH tyrosine phosphatase N-terminal domain

X: Hsp33 domain

X: Outer capsid protein sigma 3-related

X: mRNA triphosphatase CET1-related

X: Phosphoinositide phosphatase SAC1 N-terminal domain

X: ParB/Sulfiredoxin

X: Aha1/BPI domain-like

X: lantibiotic self-resistance lipoprotein MlbQ

X: RGC domain

X: Transcription factor NusA, N-terminal domain

X: N-terminal subdomain in DNA replication initiator (cdc21/cdc54)

X: N-terminal domain in beta subunit of DNA dependent RNA-polymerase

X: insertion domain in beta subunit of DNA dependent RNA-polymerase

X: barrel domain in beta subunit of DNA dependent RNA-polymerase

X: inserted a+b domain in yeast RNA polymerase beta subunit

X: C-terminal domain in beta subunit of DNA dependent RNA-polymerase

X: N-terminal domain in RNA-polymerase beta-prime subunit

X: Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit

X: first helical domain in RNA-polymerase beta-prime subunit

X: second helical domain in RNA-polymerase beta-prime subunit

X: helical domain in yeast RNA-polymerases

X: central helical domain in RNA-polymerase beta-prime subunit

H: central helical domain in RNA-polymerase beta-prime subunit

T: central helical domain in RNA-polymerase beta-prime subunit

F: RNA_pol_Rpb1_5

PF04998

Representatives:

e1twfA12[A:1060-1112,A:1331-1450] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 2.3Å

e2a69D9[D:1201-1269,D:1331-1505] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE BETA' CHAIN ; ligands: MG,ZN ; X-RAY DIFFRACTION 2.5Å

e2o5iD9[D:1201-1269,D:1331-1505] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE BETA' CHAIN ; ligands: ZN ; X-RAY DIFFRACTION 2.5Å

e3dxjN9[N:1201-1269,N:1331-1505] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

BACTRIAL RNA POLYMERASE BETA-PRIME SUBUNIT ; ligands: NE6,ZN ; X-RAY DIFFRACTION 3.0Å

e4c3hA7[A:1181-1234,A:1545-1663] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA190 ; X-RAY DIFFRACTION 3.27Å

e3hkzC2[C:66-115,C:276-395] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase subunit A'' ; X-RAY DIFFRACTION 3.4Å

e4ljzD7[D:895-931,D:1135-1151,D:1216-1376] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase subunit beta' ; ligands: ZN ; X-RAY DIFFRACTION 3.5871Å

e3wodD11[D:1201-1269,D:1331-1505] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase subunit beta' ; ligands: ZN ; X-RAY DIFFRACTION 3.6Å

e1l9uD7[D:1201-1269,D:1331-1505] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RNA POLYMERASE, BETA-PRIME SUBUNIT ; X-RAY DIFFRACTION 4Å

e5fj8A6[A:1085-1136,A:1318-1460] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1 ; ELECTRON MICROSCOPY

e8i24D7[D:898-965,D:1028-1186] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ligands: ZN ; ELECTRON MICROSCOPY

e8hkcF5[F:895-930,F:957-959,F:1136-1151,F:1216-1376] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ligands: ZN ; ELECTRON MICROSCOPY

e8g00J6[J:895-931,J:1214-1373] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ELECTRON MICROSCOPY

e8g1sJ5[J:895-931,J:1214-1373] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ELECTRON MICROSCOPY

e8g2wJ7[J:895-931,J:1214-1373] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ELECTRON MICROSCOPY

e8g4wJ2[J:895-931,J:1214-1373] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ELECTRON MICROSCOPY

e8g7eJ7[J:895-931,J:1214-1373] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ELECTRON MICROSCOPY

e8g8zJ2[J:895-931,J:1214-1373] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ELECTRON MICROSCOPY

e7uweJ1[J:895-931,J:1214-1373] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ligands: ZN ; ELECTRON MICROSCOPY

e7uwhJ7[J:895-931,J:1214-1373] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ligands: ZN ; ELECTRON MICROSCOPY

e8b3fA4[A:1083-1135,A:1361-1481] Image Pymol Jmol Links: PDB, SCOP, CATH

; ELECTRON MICROSCOPY

e8oevA9[A:1083-1135,A:1361-1485] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ELECTRON MICROSCOPY

e8oewA3[A:1083-1135,A:1361-1485] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ELECTRON MICROSCOPY

e8of0A6[A:1083-1135,A:1361-1485] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ELECTRON MICROSCOPY

e8p4bA6[A:1083-1135,A:1361-1487] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ELECTRON MICROSCOPY

e8p4cA2[A:1083-1135,A:1361-1487] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ELECTRON MICROSCOPY

e8p4dA9[A:1083-1135,A:1361-1487] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ELECTRON MICROSCOPY

e8p4eA3[A:1083-1135,A:1361-1487] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ELECTRON MICROSCOPY

e8he5A6[A:1062-1104,A:1304-1463] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ELECTRON MICROSCOPY

e8jh2A8[A:1062-1104,A:1304-1463] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ELECTRON MICROSCOPY

e8jh3A5[A:1062-1104,A:1304-1463] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ELECTRON MICROSCOPY

e8jh4A2[A:1062-1104,A:1304-1463] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ELECTRON MICROSCOPY

e7wbwA5[A:1062-1104,A:1304-1463] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ELECTRON MICROSCOPY

e7wbxA5[A:1062-1104,A:1304-1463] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ELECTRON MICROSCOPY

e2nvzA11[A:1060-1102,A:1301-1445] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II largest subunit ; ligands: UTP ; X-RAY DIFFRACTION 4.2Å

e1i6hA8[A:1060-1102,A:1301-1445] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 3.3Å

e1r9sA8[A:1060-1102,A:1301-1445] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 4.25Å

e1r5uA8[A:1060-1102,A:1301-1445] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 4.5Å

e4a3gA3[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.50Å

e4a3iA3[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.80Å

e4a93A3[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.40Å

e4bbrA3[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.40Å

e4bxzA3[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 4.80Å

e4by7A3[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.15Å

e3houA3[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.2Å

e3houM3[M:1060-1102,M:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.2Å

e3hovA3[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.5Å

e3howA3[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.6Å

e3hoxA3[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.65Å

e3hoyA3[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.4Å

e3hozA3[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.65Å

e3j1nA3[A:1060-1092,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II subunit RPB1 ; ELECTRON MICROSCOPY

e2ja5A3[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.800Å

e2ja6A3[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 4.00Å

e2ja7A3[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 3.80Å

e2ja7M3[M:1060-1102,M:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 3.80Å

e2ja8A3[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 3.80Å

e3k1fA3[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 4.3Å

e2nvtA3[A:1060-1102,A:1301-1451] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 3.36Å

e3po2A3[A:1060-1102,A:1301-1454] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.3Å

e3qt1A3[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 4.3Å

e2r92A3[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.800Å

e2r93A3[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 4.0Å

e1wcmA3[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 3.8Å

e1y1wA3[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 4.0Å

e2yu9A3[A:1060-1102,A:1301-1450] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II largest subunit ; ligands: UTP ; X-RAY DIFFRACTION 3.400Å

e4c2mP3[P:1169-1214,P:1509-1664] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA190 ; X-RAY DIFFRACTION 2.80Å

e4a3bA4[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.50Å

e4a3cA4[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.50Å

e4a3dA4[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.40Å

e4a3eA4[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.40Å

e4a3fA4[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; ligands: APC ; X-RAY DIFFRACTION 3.50Å

e4a3jA4[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; ligands: G2P ; X-RAY DIFFRACTION 3.7Å

e4a3kA4[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.50Å

e4a3lA4[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; ligands: APC ; X-RAY DIFFRACTION 3.50Å

e4a3mA4[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; ligands: APC ; X-RAY DIFFRACTION 3.90Å

e4bbsA4[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.6Å

e2e2iA5[A:1060-1102,A:1301-1449] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 3.41Å

e3gtgA5[A:1060-1102,A:1301-1451] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.78Å

e3gtjA5[A:1060-1102,A:1301-1451] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.40Å

e3gtkA5[A:1060-1102,A:1301-1451] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.80Å

e1k83A5[A:1060-1102,A:1301-1450] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 2.8Å

e1twaA5[A:1060-1102,A:1301-1450] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 3.2Å

e2b63A1[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 3.8Å

e2b8kA1[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 4.15Å

e4by1A1[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; ligands: APC ; X-RAY DIFFRACTION 3.60Å

e3gtmA1[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.80Å

e3h3vB1[B:1060-1102,B:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 4.000Å

e3i4mA1[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.7Å

e3i4nA1[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.9Å

e3j0kA1[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II largest subunit ; ELECTRON MICROSCOPY

e3po3A1[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.3Å

e2r7zA1[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.80Å

e2vumA1[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.40Å

e1y1vA1[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II largest subunit ; X-RAY DIFFRACTION

e1y1yA1[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II largest subunit ; X-RAY DIFFRACTION 4Å

e1y77A1[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; ligands: G2P ; X-RAY DIFFRACTION 4.5Å

e2e2jA4[A:1060-1102,A:1301-1445] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II largest subunit ; X-RAY DIFFRACTION 3.5Å

e3gtlA4[A:1060-1102,A:1301-1445] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.38Å

e3gtoA4[A:1060-1102,A:1301-1445] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 4.0Å

e3gtpA4[A:1060-1102,A:1301-1445] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.90Å

e3gtqA4[A:1060-1102,A:1301-1445] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.80Å

e3m3yA4[A:1060-1102,A:1301-1445] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.18Å

e3m4oA4[A:1060-1102,A:1301-1445] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.57Å

e2nvqA4[A:1060-1102,A:1301-1445] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II largest subunit ; X-RAY DIFFRACTION 2.90Å

e2nvxA4[A:1060-1102,A:1301-1445] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 3.6Å

e1r9tA4[A:1060-1102,A:1301-1445] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 3.5Å

e3rzdA4[A:1060-1102,A:1301-1445] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.300Å

e3rzoA4[A:1060-1102,A:1301-1445] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.000Å

e3s14A4[A:1060-1102,A:1301-1445] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 2.850Å

e3s15A4[A:1060-1102,A:1301-1445] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.300Å

e3s16A4[A:1060-1102,A:1301-1445] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.24Å

e3s17A4[A:1060-1102,A:1301-1445] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.200Å

e3s1mA4[A:1060-1102,A:1301-1445] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.130Å

e3s1nA4[A:1060-1102,A:1301-1445] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.100Å

e3s1qA4[A:1060-1102,A:1301-1445] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II subunit RPB1 ; ligands: ATP ; X-RAY DIFFRACTION 3.300Å

e3s1rA4[A:1060-1102,A:1301-1445] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.200Å

e3s2dA4[A:1060-1102,A:1301-1445] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.200Å

e3s2hA4[A:1060-1102,A:1301-1445] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.300Å

e1sfoA4[A:1060-1102,A:1301-1445] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 3.61Å

e1twcA5[A:1060-1102,A:1301-1385,A:1405-1450] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 3.0Å

e1twgA5[A:1060-1102,A:1301-1385,A:1405-1450] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 3.3Å

e1twhA5[A:1060-1102,A:1301-1385,A:1405-1450] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 3.4Å

e2e2hA1[A:1060-1102,A:1301-1445] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; ligands: GTP ; X-RAY DIFFRACTION 3.95Å

e3fkiA1[A:1060-1102,A:1301-1454] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.88Å

e1i3qA1[A:1060-1102,A:1301-1445] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 3.1Å

e3k7aA1[A:1060-1102,A:1301-1445] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.8Å

e1nikA1[A:1060-1102,A:1301-1452] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RPB1 ; X-RAY DIFFRACTION 4.100Å

e1nt9A1[A:1060-1102,A:1301-1453] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 4.2Å

e1pqvA1[A:1060-1102,A:1301-1453] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II largest subunit ; X-RAY DIFFRACTION 3.80Å

e3h0gM3[M:1063-1115,M:1337-1459,M:1491-1508] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II subunit rpb1 ; X-RAY DIFFRACTION 3.650Å

e4v1mA4[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; ELECTRON MICROSCOPY

e4s20D8[D:895-930,D:1136-1151,D:1216-1376] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase subunit beta' ; ligands: ZN ; X-RAY DIFFRACTION 4.7Å

e4v1nA3[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; ELECTRON MICROSCOPY

e4v1oA2[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; ELECTRON MICROSCOPY

e4x67A7[A:1060-1102,A:1301-1445] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 4.100Å

e4x6aA3[A:1060-1102,A:1301-1445] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.950Å

e4s20I1[I:895-930,I:1136-1151,I:1216-1376] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase subunit beta' ; ligands: ZN ; X-RAY DIFFRACTION 4.7Å

e4wqtI9[I:1201-1269,I:1331-1499] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase subunit beta' ; ligands: ZN ; X-RAY DIFFRACTION 4.400Å

e4wqtD3[D:1201-1269,D:1331-1499] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase subunit beta' ; ligands: ZN ; X-RAY DIFFRACTION 4.400Å

e4y52A8[A:1060-1102,A:1301-1445] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.500Å

e4y7nA9[A:1060-1102,A:1301-1445] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.300Å

e5c3eA5[A:1060-1102,A:1301-1454] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II subunit RPB1 ; ligands: MG ; X-RAY DIFFRACTION 3.400Å

e5c44A4[A:1060-1102,A:1301-1454] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.852Å

e5c4aA1[A:1060-1102,A:1301-1454] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II subunit RPB1 ; ligands: MG ; X-RAY DIFFRACTION 4.2Å

e5c4xA5[A:1060-1102,A:1301-1454] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II subunit RPB1 ; ligands: MG ; X-RAY DIFFRACTION 4.0Å

e5c4jA7[A:1060-1102,A:1301-1453] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 4.0Å

e5fmfA3[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; ELECTRON MICROSCOPY

e5svaA7[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II subunit RPB1 ; ELECTRON MICROSCOPY

e5u5qA8[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.80Å

e5u0sa8[a:1063-1116,a:1338-1456] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RNA polymerase II subunit Rpb1 ; ELECTRON MICROSCOPY

e5x50A7[A:1062-1104,A:1304-1457] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase subunit ; X-RAY DIFFRACTION 4.290Å

e5x4zA2[A:1062-1104,A:1304-1453] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase subunit ; X-RAY DIFFRACTION 7.800Å

e5x4zM4[M:1062-1104,M:1304-1453] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase subunit ; X-RAY DIFFRACTION 7.800Å

e5x51A2[A:1062-1104,A:1304-1453] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase subunit ; X-RAY DIFFRACTION 7.000Å

e5x51M6[M:1062-1104,M:1304-1453] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase subunit ; X-RAY DIFFRACTION 7.000Å

e5xogA2[A:1062-1104,A:1304-1463] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase subunit ; X-RAY DIFFRACTION 3.000Å

e5xonA4[A:1062-1104,A:1304-1463] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase subunit ; ELECTRON MICROSCOPY

e5fj9A4[A:1085-1136,A:1318-1460] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1 ; ELECTRON MICROSCOPY

e5fjaA4[A:1085-1136,A:1318-1460] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1 ; ELECTRON MICROSCOPY

e5oqjA4[A:1060-1112,A:1331-1452] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II subunit RPB1 ; ELECTRON MICROSCOPY

e5oqmA9[A:1060-1112,A:1331-1452] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II subunit RPB1 ; ELECTRON MICROSCOPY

e5ot2A9[A:1060-1102,A:1301-1454] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II subunit RPB1 ; ligands: AHW ; X-RAY DIFFRACTION 3.2Å

e5vt0J3[J:895-931,J:1214-1375] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase subunit beta' ; ligands: ZN ; ELECTRON MICROSCOPY

e2ppbD4[D:1201-1269,D:1331-1505] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-DIRECTED RNA POLYMERASE BETA' CHAIN ; ligands: STD,ZN ; X-RAY DIFFRACTION 3.0Å

e4q5sD3[D:1201-1269,D:1331-1502] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase subunit beta' ; ligands: ZN ; X-RAY DIFFRACTION 3.0Å

e5vvsA8[A:1060-1102,A:1301-1462] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II subunit RPB1 ; ELECTRON MICROSCOPY

e5vvrA7[A:1060-1102,A:1301-1455] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase II subunit RPB1 ; ELECTRON MICROSCOPY

e6b6hD7[D:895-931,D:1214-1376] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed RNA polymerase subunit beta' ; ligands: ZN ; ELECTRON MICROSCOPY

e6eu1A2[A:1085-1136,A:1318-1452] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI