Evolutionary classification of protein domain structures
alpha arraysalpha-helix arrays with mainly perpendicular helices
alpha bundlesalpha-helix bundles with mainly parallel helices
alpha superhelicesrepeating alpha-helix hairpins form a superhelix
alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain
alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix
beta barrelssingle beta-sheet folded upon itself to form a barrel
beta meanderssingle beta-sheet with mainly meander topology
beta sandwichestwo beta-sheets stacked together to form a sandwich
beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain
beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander
a+b two layersone alpha-helix layer and one beta-sheet layer




Representatives:
e3bv8A1[A:4-88]
nonrep
Image
Pymol
Jmol Links:
PDB,
SCOP,
CATH
Tetrahydrodipicolinate acetyltransferase ; ligands: GOL,NA ; X-RAY DIFFRACTION 1.750Å
e3r8yA3[A:17-89] Image Pymol Jmol Links: PDB, SCOP, CATH
2,3,4,5-TETRAHYDROPYRIDINE-2,6-DICARBOXYLATE N- ACETYLTRANSFERASE ; X-RAY DIFFRACTION 1.7Å
e3cj8A2[A:0-86] Image Pymol Jmol Links: PDB, SCOP, CATH
2,3,4,5-TETRAHYDROPYRIDINE-2,6-DICARBOXYLATE N- ACETYLTRANSFERASE ; ligands: FMT ; X-RAY DIFFRACTION 1.95Å
e3r8yC1[C:17-89] Image Pymol Jmol Links: PDB, SCOP, CATH
2,3,4,5-TETRAHYDROPYRIDINE-2,6-DICARBOXYLATE N- ACETYLTRANSFERASE ; X-RAY DIFFRACTION 1.7Å
e3r8yD1[D:17-89] Image Pymol Jmol Links: PDB, SCOP, CATH
2,3,4,5-TETRAHYDROPYRIDINE-2,6-DICARBOXYLATE N- ACETYLTRANSFERASE ; X-RAY DIFFRACTION 1.7Å
e3r8yE1[E:5-89] Image Pymol Jmol Links: PDB, SCOP, CATH
2,3,4,5-TETRAHYDROPYRIDINE-2,6-DICARBOXYLATE N- ACETYLTRANSFERASE ; X-RAY DIFFRACTION 1.7Å
e3r8yF1[F:17-89] Image Pymol Jmol Links: PDB, SCOP, CATH
2,3,4,5-TETRAHYDROPYRIDINE-2,6-DICARBOXYLATE N- ACETYLTRANSFERASE ; X-RAY DIFFRACTION 1.7Å
e3cj8B1[B:-1-86] Image Pymol Jmol Links: PDB, SCOP, CATH
2,3,4,5-TETRAHYDROPYRIDINE-2,6-DICARBOXYLATE N- ACETYLTRANSFERASE ; ligands: FMT ; X-RAY DIFFRACTION 1.95Å
e3cj8C1[C:-1-86] Image Pymol Jmol Links: PDB, SCOP, CATH
2,3,4,5-TETRAHYDROPYRIDINE-2,6-DICARBOXYLATE N- ACETYLTRANSFERASE ; ligands: FMT ; X-RAY DIFFRACTION 1.95Å
e3r8yB1[B:5-89] Image Pymol Jmol Links: PDB, SCOP, CATH
2,3,4,5-TETRAHYDROPYRIDINE-2,6-DICARBOXYLATE N- ACETYLTRANSFERASE ; ligands: CA ; X-RAY DIFFRACTION 1.7Å
a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers
a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers
a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers
a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain
a/b barrelsrepeating beta-alpha units form a barrel
a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers
mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions
few secondary structure elementsstabilized by cofactors or disulfides
extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes