Evolutionary classification of protein domain structures

HTH-type transcriptional repressor NemR,Green fluorescent protein,Green fluorescent protein,HTH-type transcriptional repressor NemR ; X-RAY DIFFRACTION 2.09962866868Å

e2i10B2[B:79-194] Image Pymol Jmol Links: PDB, SCOP, CATH

PUTATIVE TETR TRANSCRIPTIONAL REGULATOR ; ligands: NPO,PGE ; X-RAY DIFFRACTION 2.05Å

e6nsmA2[A:81-196] Image Pymol Jmol Links: PDB, SCOP, CATH DOI

TetR family transcriptional regulator CifR ; X-RAY DIFFRACTION 2.800Å

e6nsmB2[B:81-196] Image Pymol Jmol Links: PDB, SCOP, CATH DOI

TetR family transcriptional regulator CifR ; X-RAY DIFFRACTION 2.800Å

e6nsnA1[A:81-196] Image Pymol Jmol Links: PDB, SCOP, CATH DOI

TetR family transcriptional regulator CifR ; X-RAY DIFFRACTION 2.6Å

e6nsnB1[B:81-196] Image Pymol Jmol Links: PDB, SCOP, CATH DOI

TetR family transcriptional regulator CifR ; X-RAY DIFFRACTION 2.6Å

e6nsrA1[A:81-196] Image Pymol Jmol Links: PDB, SCOP, CATH DOI

TetR family transcriptional regulator CifR ; X-RAY DIFFRACTION 3.0Å

e6nsrB1[B:81-196] Image Pymol Jmol Links: PDB, SCOP, CATH DOI

TetR family transcriptional regulator CifR ; X-RAY DIFFRACTION 3.0Å

e6nsrM2[M:81-196] Image Pymol Jmol Links: PDB, SCOP, CATH DOI

TetR family transcriptional regulator CifR ; X-RAY DIFFRACTION 3.0Å

e3bruA1[A:97-214] Image Pymol Jmol Links: PDB, SCOP, CATH

Regulatory protein, TetR family ; X-RAY DIFFRACTION 2.300Å

e3eupA2[A:79-201] Image Pymol Jmol Links: PDB, SCOP, CATH

TRANSCRIPTIONAL REGULATOR, TETR FAMILY ; ligands: SO4 ; X-RAY DIFFRACTION 1.99Å

e3qbmA2[A:77-198] Image Pymol Jmol Links: PDB, SCOP, CATH

TetR transcriptional regulator ; ligands: MG,PEG,PGE ; X-RAY DIFFRACTION 1.80Å

e2hyjA2[A:83-200] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH

PUTATIVE TETR-FAMILY TRANSCRIPTIONAL REGULATOR ; ligands: CA,SO4 ; X-RAY DIFFRACTION 2.19Å

F: LuxT_C

F: TetR_C_42

F: TetR_C_12

F: TetR_C_14

F: TetR_C_27

F: TetR_C_29

F: TetR_C_30

F: TetR_C_36

F: TetR_C_5-like

F: EthR_C

F: TetR-C_39

F: TetR_C_16

F: TetR_C_28

F: TetR_C_41

F: TetR_C_43

F: TetR_C_45

F: TetR_C_46

F: TetR_C_13_2

F: Unmapped domains

Pseudo group of domains that do not map to PFam family profiles. Domains inside should not be considered as in one family.

X: Ubiquinol-cytochrome C chaperone, C-terminal domain

X: viral membrane assembly protein A6 homolog

X: SipA N-terminal domain-like

X: Fatty acid- and retinoid-binding proteins

X: CdiI immunity protein

X: Rap2b (SMA2266)

X: Death domain-associated protein 6 histone binding domain

X: Helical domain in autophagy protein 5

X: CRISPR-associated protein Cse2

X: Regulator of G-protein signaling, RGS

X: CO dehydrogenase ISP C-domain like

X: DUF3235

X: Domain of the SRP/SRP receptor G proteins-like

X: Mechanosensory ion channel subunit mec-4 cytosolic domain

X: Drug/Metabolite transporter

X: Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain

X: Transmembrane domain of VIT1

X: Terpenoid synthases

X: Lipoprotein signal peptidase

X: Putative ECF-type Sigma Factor Negative Effector

X: Helical membrane domain in lipooligosaccharide phosphoethanolamine transferase A

X: Methyl-coenzyme M reductase alpha and beta chain-C

X: Lipoxygenase

X: all-alpha NTP pyrophosphatases

X: Phospholipase C/P1 nuclease

X: Acid phosphatase/Vanadium-dependent haloperoxidase

X: ZIP zinc transporter

X: GTPase activation domain, GAP

X: Effector protein VipE

X: PGL dimerization domain

X: PmoA

X: ADP-ribosylglycohydrolase

X: Functional domain of the splicing factor Prp18

X: Tumor necrosis factor alpha-induced protein 8-like protein 2

X: Peridinin-chlorophyll protein

X: Citrobacter dihydroxyacetone kinase extra ATP-binding domain

X: C-terminal domain of B transposition protein

X: GroEL equatorial domain-like

X: A virus capsid protein alpha-helical domain

X: Fatty acid responsive transcription factor FadR, C-terminal domain

X: C-terminal Pdr1-activating domain of J-protein Zuo1

X: Helical domain of retinal degeneration 3 protein

X: TorD-like (Pfam 06192)

X: alpha-helical domain in dehydroquinate synthase-like enzymes

X: Fic-like

X: N-terminal domain in adenosine monophosphate-protein transferase vopS

X: Topoisomerase V catalytic domain-like

X: ATP-dependent DNA ligase DNA-binding domain

X: PA2201 C-terminal domain-like

X: "fingers" domain in bacteriophage RB69-like DNA polymerase I

X: "thumb" domain in bacteriophage RB69-like DNA polymerase I

X: helical bundle domain in vacuolar ATP synthase subunit C

X: STT3/PglB/AglB transmembrane domain

X: CDP-alcohol phosphotransferase helical bundle domain

X: Na/H pumping membrane integral pyrophosphatase

X: Family A G protein-coupled receptor-like

X: Bacterial photosystem II reaction centre L and M subunits-like

X: Cytochrome c oxidase subunit III-like

X: F1F0 ATP synthase subunit A

X: Neurotransmitter-gated ion-channel transmembrane pore

X: TMEM16 lipid scramblase transmembrane domain

X: V-type ATP synthase subunit C

X: Photosystem II antenna protein-like

X: Type II ABC importer transmembrane domain fold

X: Type II ABC exporter transmembrane domain fold

X: Intramembrane protease Rce1-related

X: Multidrug efflux transporter AcrB transmembrane domain

X: Twin arginine protein translocation system component TatC

X: Integral membrane glycerol 3-phosphate acyltransferase PlsY

X: Prolipoprotein diacylglyceryl transferase

X: Membrane protein insertase YidC-related

X: Bacterial cell wall synthesis membrane enzyme MraY-related

X: GxGD membrane protease

X: N-terminal domain of Delta(14)-sterol reductase, MaSR1

X: Isoprenylcysteine carboxyl methyltransferase (ICMT)

X: Calcium release-activated calcium channel protein 1

X: Calcium ATPase transmembrane domain-related

X: Transmembrane Bax inhibitor motif (TMBIM) proteins

X: Rhomboid-like

X: Cation efflux protein transmembrane domain-like

X: Sodium/Calcium exchanger

X: Diacylglycerol kinase (DAGK)

X: Bacterial hemolysins-like

X: Putative ubiquinone biosynthesis protein

X: YP_399305.1

X: ENOD40 peptide-binding domain in sucrose synthase-1

X: N-terminal domain in fatty acid synthase subunit beta

X: Inserted helical domain in fatty acid synthase subunit beta

X: HET-S N-terminal domain

X: Peroxisomal biogenesis factor 3

X: Antitoxin VbhA

X: VP4 GT domain

X: Avirulence protein ATR13

X: Spot 14 protein

X: Integrin alpha-L cytoplasmic domain

X: Oncogenic effector CagA N-terminal domain

X: Oncogenic effector CagA domain III

X: FdhE-like

X: NADPH-cytochrome p450 reductase helical insertion domain

X: Tail specific protease helical domain

X: Primase helical domain

X: NQO2 helical bundle domain

X: Conserved type six secretion component TssL-related

X: LTXXQ motif family protein

X: Small terminase central domain

X: PH domain-containing bacterial protein oligomerization domain

X: Hypothetical protein TTHB059

X: Type III secretion protein YscE

X: Uncharacterized protein GSU0061

X: HIV Rev

X: Copper-sensitive operon repressor (CsoR)

X: Type I hyperactive antifreeze protein

X: IcmR

X: Long alpha-hairpin

X: V-type proton ATPase subunit D

X: Nucleoporin p58/p45 helical region

X: helical hairpin of HlyD-like secretion proteins

X: Kv7 proximal C-terminal Domain

X: RNA polymerase II elongation factor ELL2 C-terminal domain

X: YscO-like

X: Bacteriocin pyocin-S2 N-terminal domain

X: Prolyl 4-hydroxylase alpha subunit dimerization domain

X: TcA alpha pore-forming domain

X: Hemagglutinin HA2 chain

X: Abl interactor 2

X: Kinase suppressor of Ras 1 helical hairpin domain

X: RILP-like protein 2 N-terminal helical hairpin domain

X: Smallest capsid protein (SCP)

X: Golgi to ER traffic protein 1 cytosolic domain

X: uncharacterized protein SYNW0670

X: alpha-helical domain in type II DNA topoisomerase

X: Cyclin-dependent kinase 2-associated protein 1 C-terminal domain

X: Rad50-binding domain of Mre11

X: Nudix hydrolase N-terminal dimerization domain

X: Hypothetical protein RHA1_ro05818 N-terminal helical domain

X: Viral accessory protein x (Vpx) / viral protein r (Vpr)

X: Flagellar biosynthetic protein FliP periplasmic domain

X: Transhydrogeanse domain II

X: Helical domain in structural maintenance of chromosomes protein 3

X: Mitotic chromosome determinant-related protein N-terminal domain

X: Fluorescence recovery protein

X: Paddle domain of mitochondrial dynamin

X: Hexameric cytochrome HTHP

X: Ribosome modulation factor

X: X8 domain

X: Uncharacterized protein PP-LUZ7_gp033

X: Helical bundle domain in CusB

X: Helical domain in EHD2

X: central core domain of D-alanyl transfer protein

X: helical ridge domain of D-alanyl transfer protein

X: Helical bundle domain in S46 peptidase

X: Middle domain of hexon-associated protein (IIIa)

X: RodA transmembrane domain

X: Emopamil binding protein (EBP) transmembrane domain

X: N-terminal domain of Small RNA Degrading Nuclease (SDN)

X: Zn-binding domain in glutaminyl-tRNA synthetase

alpha superhelicesrepeating alpha-helix hairpins form a superhelix

alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain

alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix

beta barrelssingle beta-sheet folded upon itself to form a barrel

beta meanderssingle beta-sheet with mainly meander topology

beta sandwichestwo beta-sheets stacked together to form a sandwich

beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain

beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander

a+b two layersone alpha-helix layer and one beta-sheet layer

a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers

a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers

a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers

a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain

a/b barrelsrepeating beta-alpha units form a barrel

a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers

mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions

few secondary structure elementsstabilized by cofactors or disulfides

extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes

special