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X - Possible homology level

H - Homology level

T - Topology level

F - Family level

* - Provisional representative


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Evolutionary classification of protein domain structures

alpha arraysalpha-helix arrays with mainly perpendicular helices

alpha bundlesalpha-helix bundles with mainly parallel helices

alpha superhelicesrepeating alpha-helix hairpins form a superhelix

alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain

alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix

beta barrelssingle beta-sheet folded upon itself to form a barrel

beta meanderssingle beta-sheet with mainly meander topology

beta sandwichestwo beta-sheets stacked together to form a sandwich

beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain

beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander

a+b two layersone alpha-helix layer and one beta-sheet layer

a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers

a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers

a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers

a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain

a/b barrelsrepeating beta-alpha units form a barrel

a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers

X: Methylesterase CheB, C-terminal domain
H: Methylesterase CheB, C-terminal domain
T: Methylesterase CheB, C-terminal domain
F: CheB_methylest

PF01339

Representatives:

e1chdA1[A:152-349] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

CHEB METHYLESTERASE ; X-RAY DIFFRACTION 1.75Å

e1a2oB2[B:152-347] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

CHEB METHYLESTERASE ; X-RAY DIFFRACTION 2.4Å

e1a2oA2[A:152-347] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

CHEB METHYLESTERASE ; X-RAY DIFFRACTION 2.4Å

e3sftA1[A:153-344] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

CHEMOTAXIS RESPONSE REGULATOR PROTEIN-GLUTAMATE METHYLESTERASE ; X-RAY DIFFRACTION 2.15Å

e6ymzA1[A:141-350] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Protein-glutamate methylesterase/protein-glutamine glutaminase ; ligands: ACT,GOL,NA ; X-RAY DIFFRACTION 2.30Å

e6ymzB1[B:141-350] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Protein-glutamate methylesterase/protein-glutamine glutaminase ; ligands: GOL,NA ; X-RAY DIFFRACTION 2.30Å

e6ymzC1[C:141-350] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Protein-glutamate methylesterase/protein-glutamine glutaminase ; ligands: GOL,NA ; X-RAY DIFFRACTION 2.30Å

e6ymzD2[D:141-345] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Protein-glutamate methylesterase/protein-glutamine glutaminase ; ligands: GOL,NA ; X-RAY DIFFRACTION 2.30Å

e6ymzE2[E:141-344] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Protein-glutamate methylesterase/protein-glutamine glutaminase ; ligands: NA,SO4 ; X-RAY DIFFRACTION 2.30Å

e7esgA3[A:364-598] Image Pymol Jmol Links: PDB, SCOP, CATH

Glutathione S-transferase,Protein-glutamate methylesterase/protein-glutamine glutaminase ; X-RAY DIFFRACTION 2.53Å

mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions

few secondary structure elementsstabilized by cofactors or disulfides

extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes