Evolutionary classification of protein domain structures
alpha arraysalpha-helix arrays with mainly perpendicular helices
alpha bundlesalpha-helix bundles with mainly parallel helices
alpha superhelicesrepeating alpha-helix hairpins form a superhelix
alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain
alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix
beta barrelssingle beta-sheet folded upon itself to form a barrel
beta meanderssingle beta-sheet with mainly meander topology
beta sandwichestwo beta-sheets stacked together to form a sandwich
Representatives:
e1vpsA1[A:32-316] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
POLYOMAVIRUS VP1 PENTAMER ; X-RAY DIFFRACTION 1.9Å
e1cn3C1[C:34-316] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
COAT PROTEIN VP1 ; X-RAY DIFFRACTION 2.2Å
e1sieE1[E:32-316] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
POLYOMAVIRUS COAT PROTEIN VP1 ; X-RAY DIFFRACTION 3.65Å
e1cn3E1[E:34-316] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
COAT PROTEIN VP1 ; X-RAY DIFFRACTION 2.2Å
e1cn3A1[A:34-316] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
COAT PROTEIN VP1 ; X-RAY DIFFRACTION 2.2Å
e1vpnD1[D:32-316] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
POLYOMAVIRUS VP1 PENTAMER ; X-RAY DIFFRACTION 2.0Å
e1vpsB1[B:32-316] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
POLYOMAVIRUS VP1 PENTAMER ; X-RAY DIFFRACTION 1.9Å
e1sidB1[B:32-316] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
POLYOMAVIRUS COAT PROTEIN VP1 ; X-RAY DIFFRACTION 3.65Å
e1sidE1[E:32-316] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
POLYOMAVIRUS COAT PROTEIN VP1 ; X-RAY DIFFRACTION 3.65Å
e1vpnB1[B:32-316] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
POLYOMAVIRUS VP1 PENTAMER ; X-RAY DIFFRACTION 2.0Å
e1vpnA1[A:32-316] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
POLYOMAVIRUS VP1 PENTAMER ; X-RAY DIFFRACTION 2.0Å
e1vpsD1[D:32-316] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
POLYOMAVIRUS VP1 PENTAMER ; X-RAY DIFFRACTION 1.9Å
e1vpsC1[C:32-316] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
POLYOMAVIRUS VP1 PENTAMER ; X-RAY DIFFRACTION 1.9Å
e1sieB1[B:32-316] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
POLYOMAVIRUS COAT PROTEIN VP1 ; X-RAY DIFFRACTION 3.65Å
e1vpsE1[E:32-316] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
POLYOMAVIRUS VP1 PENTAMER ; X-RAY DIFFRACTION 1.9Å
e1sidA1[A:32-316] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
POLYOMAVIRUS COAT PROTEIN VP1 ; X-RAY DIFFRACTION 3.65Å
e1vpnC1[C:32-316] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
POLYOMAVIRUS VP1 PENTAMER ; X-RAY DIFFRACTION 2.0Å
e1vpnE1[E:32-316] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
POLYOMAVIRUS VP1 PENTAMER ; X-RAY DIFFRACTION 2.0Å
e1cn3B1[B:34-316] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
COAT PROTEIN VP1 ; X-RAY DIFFRACTION 2.2Å
e1cn3D1[D:34-316] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
COAT PROTEIN VP1 ; X-RAY DIFFRACTION 2.2Å
e4fmgA1[A:38-319] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.1Å
e3bwqB1[B:43-297] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Capsid protein VP1 ; X-RAY DIFFRACTION 2.3Å
e3bwrB1[B:43-297] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Capsid protein VP1 ; ligands: EDO ; X-RAY DIFFRACTION 2.25Å
e3bwqC1[C:31-297] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Capsid protein VP1 ; X-RAY DIFFRACTION 2.3Å
e3bwqD1[D:31-297] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Capsid protein VP1 ; X-RAY DIFFRACTION 2.3Å
e3bwqE1[E:32-297] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Capsid protein VP1 ; X-RAY DIFFRACTION 2.3Å
e3bwrA1[A:31-297] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Capsid protein VP1 ; ligands: EDO ; X-RAY DIFFRACTION 2.25Å
e3bwrC1[C:31-297] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Capsid protein VP1 ; ligands: EDO ; X-RAY DIFFRACTION 2.25Å
e3bwrD1[D:31-297] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Capsid protein VP1 ; ligands: EDO ; X-RAY DIFFRACTION 2.25Å
e3bwrE1[E:32-297] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Capsid protein VP1 ; ligands: EDO ; X-RAY DIFFRACTION 2.25Å
e3nxdB1[B:25-289] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major capsid protein VP1 ; ligands: GOL ; X-RAY DIFFRACTION 2.0Å
e3nxdA1[A:24-289] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major capsid protein VP1 ; ligands: EDO,GOL ; X-RAY DIFFRACTION 2.0Å
e3nxdD1[D:25-289] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major capsid protein VP1 ; ligands: EDO,GOL ; X-RAY DIFFRACTION 2.0Å
e3nxdE1[E:25-289] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major capsid protein VP1 ; ligands: EDO,GOL ; X-RAY DIFFRACTION 2.0Å
e3nxgA1[A:24-289] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major capsid protein VP1 ; ligands: EDO,GOL ; X-RAY DIFFRACTION 1.95Å
e3nxgB1[B:24-288] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major capsid protein VP1 ; ligands: GOL ; X-RAY DIFFRACTION 1.95Å
e3nxgC1[C:25-289] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major capsid protein VP1 ; ligands: EDO,GOL ; X-RAY DIFFRACTION 1.95Å
e3nxgD1[D:24-289] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major capsid protein VP1 ; ligands: EDO,GOL ; X-RAY DIFFRACTION 1.95Å
e3nxgE1[E:24-289] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major capsid protein VP1 ; ligands: EDO,GOL ; X-RAY DIFFRACTION 1.95Å
e3s7vI1[I:36-304] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major capsid protein VP1 ; X-RAY DIFFRACTION 2.55Å
e3s7vB1[B:35-303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major capsid protein VP1 ; X-RAY DIFFRACTION 2.55Å
e3s7vC1[C:34-304] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major capsid protein VP1 ; X-RAY DIFFRACTION 2.55Å
e3s7vD1[D:34-304] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major capsid protein VP1 ; X-RAY DIFFRACTION 2.55Å
e3s7vE1[E:35-304] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major capsid protein VP1 ; X-RAY DIFFRACTION 2.55Å
e3s7vF1[F:30-304] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major capsid protein VP1 ; X-RAY DIFFRACTION 2.55Å
e3s7vH1[H:34-303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major capsid protein VP1 ; X-RAY DIFFRACTION 2.55Å
e3s7vJ1[J:35-304] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major capsid protein VP1 ; X-RAY DIFFRACTION 2.55Å
e3s7vG1[G:35-304] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major capsid protein VP1 ; X-RAY DIFFRACTION 2.55Å
e3s7xB1[B:32-296] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MAJOR CAPSID PROTEIN VP1 ; ligands: CL,GOL,NA ; X-RAY DIFFRACTION 2.9Å
e3s7xC1[C:31-296] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MAJOR CAPSID PROTEIN VP1 ; ligands: CL,GOL,NA ; X-RAY DIFFRACTION 2.9Å
e3s7xD1[D:35-296] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MAJOR CAPSID PROTEIN VP1 ; ligands: CL,GOL,NA ; X-RAY DIFFRACTION 2.9Å
e3s7xE1[E:37-294] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MAJOR CAPSID PROTEIN VP1 ; ligands: CL,GOL,NA ; X-RAY DIFFRACTION 2.9Å
e4fmgN1[N:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.1Å
e4fmhQ1[Q:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.85Å
e4fmjC1[C:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.4Å
e4fmhM1[M:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.85Å
e4fmhG1[G:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.85Å
e4fmgJ1[J:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.1Å
e4fmjF1[F:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL ; X-RAY DIFFRACTION 2.4Å
e4fmgH1[H:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.1Å
e4fmhA1[A:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.85Å
e4fmiP1[P:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.0Å
e4fmiQ1[Q:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.0Å
e4fmhD1[D:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.85Å
e4fmgE1[E:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.1Å
e4fmhJ1[J:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.85Å
e4fmhH1[H:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.85Å
e4fmgG1[G:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.1Å
e4fmgL1[L:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.1Å
e4fmiS1[S:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.0Å
e4fmjT1[T:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL,SIA ; X-RAY DIFFRACTION 2.4Å
e4fmjA1[A:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.4Å
e4fmhT1[T:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.85Å
e4fmiI1[I:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.0Å
e4fmjL1[L:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL ; X-RAY DIFFRACTION 2.4Å
e4fmjK1[K:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL,SIA ; X-RAY DIFFRACTION 2.4Å
e4fmiK1[K:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.0Å
e4fmjN1[N:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.4Å
e4fmhC1[C:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.85Å
e4fmgS1[S:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.1Å
e4fmjI1[I:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL ; X-RAY DIFFRACTION 2.4Å
e4fmiB1[B:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.0Å
e4fmgQ1[Q:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.1Å
e4fmhO1[O:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.85Å
e4fmhE1[E:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.85Å
e4fmhS1[S:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.85Å
e4fmgC1[C:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.1Å
e4fmiN1[N:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.0Å
e4fmhK1[K:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.85Å
e4fmjG1[G:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL ; X-RAY DIFFRACTION 2.4Å
e4fmiD1[D:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.0Å
e4fmgK1[K:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.1Å
e4fmgM1[M:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.1Å
e4fmjQ1[Q:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL,SIA ; X-RAY DIFFRACTION 2.4Å
e4fmjS1[S:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,SIA ; X-RAY DIFFRACTION 2.4Å
e4fmhI1[I:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.85Å
e4fmgB1[B:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.1Å
e4fmgO1[O:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.1Å
e4fmiE1[E:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL,SIA ; X-RAY DIFFRACTION 2.0Å
e4fmjE1[E:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL ; X-RAY DIFFRACTION 2.4Å
e4fmiG1[G:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.0Å
e4fmgT1[T:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.1Å
e4fmhL1[L:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.85Å
e4fmiR1[R:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.0Å
e4fmhF1[F:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.85Å
e4fmgP1[P:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.1Å
e4fmiT1[T:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL,SIA ; X-RAY DIFFRACTION 2.0Å
e4fmgI1[I:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.1Å
e4fmjB1[B:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL ; X-RAY DIFFRACTION 2.4Å
e4fmhB1[B:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.85Å
e4fmhN1[N:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.85Å
e4fmjR1[R:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL ; X-RAY DIFFRACTION 2.4Å
e4fmiC1[C:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.0Å
e4fmjJ1[J:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL ; X-RAY DIFFRACTION 2.4Å
e4fmjM1[M:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL,SIA ; X-RAY DIFFRACTION 2.4Å
e4fmgR1[R:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.1Å
e4fmjH1[H:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,SIA ; X-RAY DIFFRACTION 2.4Å
e4fmgF1[F:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.1Å
e4fmiL1[L:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.0Å
e4fmiH1[H:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.0Å
e4fmiO1[O:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.0Å
e4fmiJ1[J:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.0Å
e4fmjO1[O:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,SIA ; X-RAY DIFFRACTION 2.4Å
e4fmhR1[R:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.85Å
e4fmgD1[D:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.1Å
e4fmiF1[F:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.0Å
e4fmjD1[D:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.4Å
e4fmiM1[M:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL,SIA ; X-RAY DIFFRACTION 2.0Å
e4fmiA1[A:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL,SIA ; X-RAY DIFFRACTION 2.0Å
e4fmjP1[P:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.4Å
e4fmhP1[P:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.85Å
e4jceA1[A:24-288] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MAJOR CAPSID PROTEIN VP1 ; ligands: GOL ; X-RAY DIFFRACTION 1.9Å
e4jcdC1[C:25-288] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major capsid protein VP1 ; ligands: GOL ; X-RAY DIFFRACTION 2.0Å
e4jceB1[B:24-288] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MAJOR CAPSID PROTEIN VP1 ; ligands: GOL ; X-RAY DIFFRACTION 1.9Å
e4jceD1[D:24-288] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MAJOR CAPSID PROTEIN VP1 ; ligands: EDO,GOL ; X-RAY DIFFRACTION 1.9Å
e4jceE1[E:24-288] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MAJOR CAPSID PROTEIN VP1 ; ligands: EDO,GOL ; X-RAY DIFFRACTION 1.9Å
e4jcfC1[C:25-288] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major capsid protein VP1 ; ligands: GOL ; X-RAY DIFFRACTION 2.2Å
e4jcdA1[A:24-288] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major capsid protein VP1 ; ligands: EDO,GOL ; X-RAY DIFFRACTION 2.0Å
e4jcdB1[B:24-288] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major capsid protein VP1 ; ligands: GOL ; X-RAY DIFFRACTION 2.0Å
e4jcdD1[D:24-288] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major capsid protein VP1 ; ligands: EDO,GOL ; X-RAY DIFFRACTION 2.0Å
e4jcdE1[E:24-288] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major capsid protein VP1 ; ligands: EDO,GOL ; X-RAY DIFFRACTION 2.0Å
e4jceC1[C:25-288] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MAJOR CAPSID PROTEIN VP1 ; ligands: GOL ; X-RAY DIFFRACTION 1.9Å
e4jcfA1[A:25-288] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major capsid protein VP1 ; ligands: EDO,GOL ; X-RAY DIFFRACTION 2.2Å
e4jcfB1[B:24-288] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major capsid protein VP1 ; ligands: GOL ; X-RAY DIFFRACTION 2.2Å
e4jcfD1[D:24-288] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major capsid protein VP1 ; ligands: GOL ; X-RAY DIFFRACTION 2.2Å
e4jcfE1[E:24-288] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major capsid protein VP1 ; ligands: GOL ; X-RAY DIFFRACTION 2.2Å
e4mj0C1[C:34-295] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 capsid protein ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.7Å
e4mj1B1[B:34-297] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 CAPSID PROTEIN ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.0Å
e4mj0E1[E:32-298] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 capsid protein ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.7Å
e4mj1A1[A:33-296] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 CAPSID PROTEIN ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.0Å
e4mj0A1[A:32-296] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 capsid protein ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.7Å
e4mj0B1[B:33-297] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 capsid protein ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.7Å
e4mj0D1[D:32-298] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 capsid protein ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.7Å
e4mj1C1[C:43-295] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 CAPSID PROTEIN ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.0Å
e4mj1D1[D:32-297] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 CAPSID PROTEIN ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.0Å
e4mj1E1[E:32-297] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 CAPSID PROTEIN ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.0Å
e4mbxB1[B:25-300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MAJOR CAPSID PROTEIN VP1 ; ligands: CA,EDO ; X-RAY DIFFRACTION 1.92Å
e4mbxC1[C:25-300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MAJOR CAPSID PROTEIN VP1 ; ligands: CA,EDO ; X-RAY DIFFRACTION 1.92Å
e4mbxD1[D:25-299] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MAJOR CAPSID PROTEIN VP1 ; ligands: CA,EDO ; X-RAY DIFFRACTION 1.92Å
e4mbxF1[F:25-298] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MAJOR CAPSID PROTEIN VP1 ; ligands: CA,EDO ; X-RAY DIFFRACTION 1.92Å
e4mbxH1[H:25-298] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MAJOR CAPSID PROTEIN VP1 ; ligands: CA,EDO ; X-RAY DIFFRACTION 1.92Å
e4mbxI1[I:25-299] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MAJOR CAPSID PROTEIN VP1 ; ligands: CA,EDO ; X-RAY DIFFRACTION 1.92Å
e4mbxJ1[J:25-300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MAJOR CAPSID PROTEIN VP1 ; ligands: CA,EDO ; X-RAY DIFFRACTION 1.92Å
e4mbyB1[B:25-299] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major Capsid Protein VP1 ; ligands: CA,CL,EDO,IPA ; X-RAY DIFFRACTION 1.48Å
e4mbyC1[C:25-299] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major Capsid Protein VP1 ; ligands: CA,CL,EDO,IPA ; X-RAY DIFFRACTION 1.48Å
e4mbyD1[D:25-299] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major Capsid Protein VP1 ; ligands: CA,CL,EDO,IPA ; X-RAY DIFFRACTION 1.48Å
e4mbyF1[F:25-298] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major Capsid Protein VP1 ; ligands: CA,CL,EDO,IPA ; X-RAY DIFFRACTION 1.48Å
e4mbyH1[H:25-298] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major Capsid Protein VP1 ; ligands: CA,CL,EDO,IPA ; X-RAY DIFFRACTION 1.48Å
e4mbyI1[I:25-298] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major Capsid Protein VP1 ; ligands: CA,CL,EDO,IPA ; X-RAY DIFFRACTION 1.48Å
e4mbyJ1[J:25-299] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major Capsid Protein VP1 ; ligands: CA,CL,EDO,IPA ; X-RAY DIFFRACTION 1.48Å
e4mbzB1[B:25-299] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major Capsid Protein VP1 ; ligands: CA,CL,EDO,IPA ; X-RAY DIFFRACTION 1.75Å
e4mbzC1[C:25-299] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major Capsid Protein VP1 ; ligands: CA,CL,EDO,IPA ; X-RAY DIFFRACTION 1.75Å
e4mbzD1[D:26-299] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major Capsid Protein VP1 ; ligands: CA,CL,EDO,IPA ; X-RAY DIFFRACTION 1.75Å
e4mbzF1[F:25-298] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major Capsid Protein VP1 ; ligands: CA,CL,EDO,IPA ; X-RAY DIFFRACTION 1.75Å
e4mbzH1[H:25-298] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major Capsid Protein VP1 ; ligands: CA,CL,EDO,IPA ; X-RAY DIFFRACTION 1.75Å
e4mbzI1[I:25-299] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major Capsid Protein VP1 ; ligands: CA,CL,EDO,IPA ; X-RAY DIFFRACTION 1.75Å
e4mbzG1[G:25-298] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major Capsid Protein VP1 ; ligands: CA,CL,EDO,IPA ; X-RAY DIFFRACTION 1.75Å
e4mbxG1[G:25-297] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MAJOR CAPSID PROTEIN VP1 ; ligands: CA,EDO ; X-RAY DIFFRACTION 1.92Å
e4mbyG1[G:25-297] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major Capsid Protein VP1 ; ligands: CA,CL,EDO,IPA ; X-RAY DIFFRACTION 1.48Å
e4mbxA1[A:25-301] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MAJOR CAPSID PROTEIN VP1 ; ligands: CA,EDO ; X-RAY DIFFRACTION 1.92Å
e4mbxE1[E:25-301] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MAJOR CAPSID PROTEIN VP1 ; ligands: CA,EDO ; X-RAY DIFFRACTION 1.92Å
e4mbyA1[A:25-301] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major Capsid Protein VP1 ; ligands: CA,CL,EDO,IPA ; X-RAY DIFFRACTION 1.48Å
e4mbyE1[E:25-301] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major Capsid Protein VP1 ; ligands: CA,CL,EDO,IPA ; X-RAY DIFFRACTION 1.48Å
e4mbzA1[A:25-301] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major Capsid Protein VP1 ; ligands: CA,CL,EDO,IPA ; X-RAY DIFFRACTION 1.75Å
e4mbzE1[E:25-301] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major Capsid Protein VP1 ; ligands: CA,CL,EDO,IPA ; X-RAY DIFFRACTION 1.75Å
e4mbzJ1[J:24-300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Major Capsid Protein VP1 ; ligands: CA,CL,EDO,IPA ; X-RAY DIFFRACTION 1.75Å
e4poqA1[A:33-303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CA,EDO,IPA ; X-RAY DIFFRACTION 2.0Å
e4poqB1[B:33-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CA,EDO,IPA ; X-RAY DIFFRACTION 2.0Å
e4poqC1[C:33-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CA,EDO,IPA ; X-RAY DIFFRACTION 2.0Å
e4poqD1[D:33-303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CA,EDO,IPA ; X-RAY DIFFRACTION 2.0Å
e4poqE1[E:33-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CA,EDO,IPA ; X-RAY DIFFRACTION 2.0Å
e4poqF1[F:33-304] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CA,EDO,IPA ; X-RAY DIFFRACTION 2.0Å
e4poqG1[G:33-303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CA,EDO,IPA ; X-RAY DIFFRACTION 2.0Å
e4poqH1[H:31-304] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CA,IPA ; X-RAY DIFFRACTION 2.0Å
e4poqI1[I:31-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CA,EDO,IPA ; X-RAY DIFFRACTION 2.0Å
e4poqJ1[J:32-304] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CA,EDO,IPA ; X-RAY DIFFRACTION 2.0Å
e4porA1[A:33-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CA,EDO,IPA ; X-RAY DIFFRACTION 2.09Å
e4porB1[B:33-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CA,EDO,IPA ; X-RAY DIFFRACTION 2.09Å
e4porC1[C:33-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CA,EDO,IPA ; X-RAY DIFFRACTION 2.09Å
e4porD1[D:33-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CA,EDO,IPA ; X-RAY DIFFRACTION 2.09Å
e4porE1[E:33-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
VP1 ; ligands: CA,EDO,IPA ; X-RAY DIFFRACTION 2.09Å
NextPseudo group of domains that do not map to PFam family profiles. Domains inside should not be considered as in one family.
some similarity with Ig fold
beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain
beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander
a+b two layersone alpha-helix layer and one beta-sheet layer
a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers
a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers
a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers
a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain
a/b barrelsrepeating beta-alpha units form a barrel
a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers
mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions
few secondary structure elementsstabilized by cofactors or disulfides
extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes