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X - Possible homology level

H - Homology level

T - Topology level

F - Family level

* - Provisional representative


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Evolutionary classification of protein domain structures

alpha arraysalpha-helix arrays with mainly perpendicular helices

alpha bundlesalpha-helix bundles with mainly parallel helices

alpha superhelicesrepeating alpha-helix hairpins form a superhelix

alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain

alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix

beta barrelssingle beta-sheet folded upon itself to form a barrel

beta meanderssingle beta-sheet with mainly meander topology

beta sandwichestwo beta-sheets stacked together to form a sandwich

X: jelly-roll
H: Nucleoplasmin-like/VP (viral coat and capsid proteins)
T: Nucleoplasmin-like/VP (viral coat and capsid proteins)
F: Polyoma_coat

PF00718 CL0055

Representatives:

e1vpsA1[A:32-316] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

POLYOMAVIRUS VP1 PENTAMER ; X-RAY DIFFRACTION 1.9Å

e1cn3C1[C:34-316] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

COAT PROTEIN VP1 ; X-RAY DIFFRACTION 2.2Å

e1sieE1[E:32-316] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

POLYOMAVIRUS COAT PROTEIN VP1 ; X-RAY DIFFRACTION 3.65Å

e1cn3E1[E:34-316] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

COAT PROTEIN VP1 ; X-RAY DIFFRACTION 2.2Å

e1cn3A1[A:34-316] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

COAT PROTEIN VP1 ; X-RAY DIFFRACTION 2.2Å

e1vpnD1[D:32-316] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

POLYOMAVIRUS VP1 PENTAMER ; X-RAY DIFFRACTION 2.0Å

e1vpsB1[B:32-316] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

POLYOMAVIRUS VP1 PENTAMER ; X-RAY DIFFRACTION 1.9Å

e1sidB1[B:32-316] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

POLYOMAVIRUS COAT PROTEIN VP1 ; X-RAY DIFFRACTION 3.65Å

e1sidE1[E:32-316] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

POLYOMAVIRUS COAT PROTEIN VP1 ; X-RAY DIFFRACTION 3.65Å

e1vpnB1[B:32-316] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

POLYOMAVIRUS VP1 PENTAMER ; X-RAY DIFFRACTION 2.0Å

e1vpnA1[A:32-316] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

POLYOMAVIRUS VP1 PENTAMER ; X-RAY DIFFRACTION 2.0Å

e1vpsD1[D:32-316] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

POLYOMAVIRUS VP1 PENTAMER ; X-RAY DIFFRACTION 1.9Å

e1vpsC1[C:32-316] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

POLYOMAVIRUS VP1 PENTAMER ; X-RAY DIFFRACTION 1.9Å

e1sieB1[B:32-316] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

POLYOMAVIRUS COAT PROTEIN VP1 ; X-RAY DIFFRACTION 3.65Å

e1vpsE1[E:32-316] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

POLYOMAVIRUS VP1 PENTAMER ; X-RAY DIFFRACTION 1.9Å

e1sidA1[A:32-316] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

POLYOMAVIRUS COAT PROTEIN VP1 ; X-RAY DIFFRACTION 3.65Å

e1vpnC1[C:32-316] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

POLYOMAVIRUS VP1 PENTAMER ; X-RAY DIFFRACTION 2.0Å

e1vpnE1[E:32-316] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

POLYOMAVIRUS VP1 PENTAMER ; X-RAY DIFFRACTION 2.0Å

e1cn3B1[B:34-316] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

COAT PROTEIN VP1 ; X-RAY DIFFRACTION 2.2Å

e1cn3D1[D:34-316] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

COAT PROTEIN VP1 ; X-RAY DIFFRACTION 2.2Å

e4fmgA1[A:38-319] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.1Å

e3bwqB1[B:43-297] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; X-RAY DIFFRACTION 2.3Å

e3bwrB1[B:43-297] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: EDO ; X-RAY DIFFRACTION 2.25Å

e3bwqC1[C:31-297] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; X-RAY DIFFRACTION 2.3Å

e3bwqD1[D:31-297] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; X-RAY DIFFRACTION 2.3Å

e3bwqE1[E:32-297] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; X-RAY DIFFRACTION 2.3Å

e3bwrA1[A:31-297] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: EDO ; X-RAY DIFFRACTION 2.25Å

e3bwrC1[C:31-297] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: EDO ; X-RAY DIFFRACTION 2.25Å

e3bwrD1[D:31-297] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: EDO ; X-RAY DIFFRACTION 2.25Å

e3bwrE1[E:32-297] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: EDO ; X-RAY DIFFRACTION 2.25Å

e3nxdB1[B:25-289] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1 ; ligands: GOL ; X-RAY DIFFRACTION 2.0Å

e3nxdA1[A:24-289] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1 ; ligands: EDO,GOL ; X-RAY DIFFRACTION 2.0Å

e3nxdD1[D:25-289] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1 ; ligands: EDO,GOL ; X-RAY DIFFRACTION 2.0Å

e3nxdE1[E:25-289] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1 ; ligands: EDO,GOL ; X-RAY DIFFRACTION 2.0Å

e3nxgA1[A:24-289] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1 ; ligands: EDO,GOL ; X-RAY DIFFRACTION 1.95Å

e3nxgB1[B:24-288] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1 ; ligands: GOL ; X-RAY DIFFRACTION 1.95Å

e3nxgC1[C:25-289] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1 ; ligands: EDO,GOL ; X-RAY DIFFRACTION 1.95Å

e3nxgD1[D:24-289] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1 ; ligands: EDO,GOL ; X-RAY DIFFRACTION 1.95Å

e3nxgE1[E:24-289] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1 ; ligands: EDO,GOL ; X-RAY DIFFRACTION 1.95Å

e3s7vI1[I:36-304] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1 ; X-RAY DIFFRACTION 2.55Å

e3s7vB1[B:35-303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1 ; X-RAY DIFFRACTION 2.55Å

e3s7vC1[C:34-304] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1 ; X-RAY DIFFRACTION 2.55Å

e3s7vD1[D:34-304] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1 ; X-RAY DIFFRACTION 2.55Å

e3s7vE1[E:35-304] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1 ; X-RAY DIFFRACTION 2.55Å

e3s7vF1[F:30-304] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1 ; X-RAY DIFFRACTION 2.55Å

e3s7vH1[H:34-303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1 ; X-RAY DIFFRACTION 2.55Å

e3s7vJ1[J:35-304] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1 ; X-RAY DIFFRACTION 2.55Å

e3s7vG1[G:35-304] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1 ; X-RAY DIFFRACTION 2.55Å

e3s7xB1[B:32-296] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

MAJOR CAPSID PROTEIN VP1 ; ligands: CL,GOL,NA ; X-RAY DIFFRACTION 2.9Å

e3s7xC1[C:31-296] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

MAJOR CAPSID PROTEIN VP1 ; ligands: CL,GOL,NA ; X-RAY DIFFRACTION 2.9Å

e3s7xD1[D:35-296] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

MAJOR CAPSID PROTEIN VP1 ; ligands: CL,GOL,NA ; X-RAY DIFFRACTION 2.9Å

e3s7xE1[E:37-294] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

MAJOR CAPSID PROTEIN VP1 ; ligands: CL,GOL,NA ; X-RAY DIFFRACTION 2.9Å

e4fmgN1[N:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.1Å

e4fmhQ1[Q:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.85Å

e4fmjC1[C:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.4Å

e4fmhM1[M:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.85Å

e4fmhG1[G:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.85Å

e4fmgJ1[J:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.1Å

e4fmjF1[F:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL ; X-RAY DIFFRACTION 2.4Å

e4fmgH1[H:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.1Å

e4fmhA1[A:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.85Å

e4fmiP1[P:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.0Å

e4fmiQ1[Q:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.0Å

e4fmhD1[D:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.85Å

e4fmgE1[E:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.1Å

e4fmhJ1[J:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.85Å

e4fmhH1[H:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.85Å

e4fmgG1[G:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.1Å

e4fmgL1[L:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.1Å

e4fmiS1[S:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.0Å

e4fmjT1[T:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL,SIA ; X-RAY DIFFRACTION 2.4Å

e4fmjA1[A:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.4Å

e4fmhT1[T:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.85Å

e4fmiI1[I:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.0Å

e4fmjL1[L:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL ; X-RAY DIFFRACTION 2.4Å

e4fmjK1[K:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL,SIA ; X-RAY DIFFRACTION 2.4Å

e4fmiK1[K:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.0Å

e4fmjN1[N:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.4Å

e4fmhC1[C:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.85Å

e4fmgS1[S:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.1Å

e4fmjI1[I:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL ; X-RAY DIFFRACTION 2.4Å

e4fmiB1[B:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.0Å

e4fmgQ1[Q:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.1Å

e4fmhO1[O:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.85Å

e4fmhE1[E:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.85Å

e4fmhS1[S:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.85Å

e4fmgC1[C:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.1Å

e4fmiN1[N:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.0Å

e4fmhK1[K:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.85Å

e4fmjG1[G:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL ; X-RAY DIFFRACTION 2.4Å

e4fmiD1[D:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.0Å

e4fmgK1[K:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.1Å

e4fmgM1[M:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.1Å

e4fmjQ1[Q:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL,SIA ; X-RAY DIFFRACTION 2.4Å

e4fmjS1[S:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,SIA ; X-RAY DIFFRACTION 2.4Å

e4fmhI1[I:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.85Å

e4fmgB1[B:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.1Å

e4fmgO1[O:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.1Å

e4fmiE1[E:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL,SIA ; X-RAY DIFFRACTION 2.0Å

e4fmjE1[E:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL ; X-RAY DIFFRACTION 2.4Å

e4fmiG1[G:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.0Å

e4fmgT1[T:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.1Å

e4fmhL1[L:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.85Å

e4fmiR1[R:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.0Å

e4fmhF1[F:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.85Å

e4fmgP1[P:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.1Å

e4fmiT1[T:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL,SIA ; X-RAY DIFFRACTION 2.0Å

e4fmgI1[I:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.1Å

e4fmjB1[B:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL ; X-RAY DIFFRACTION 2.4Å

e4fmhB1[B:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.85Å

e4fmhN1[N:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.85Å

e4fmjR1[R:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL ; X-RAY DIFFRACTION 2.4Å

e4fmiC1[C:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.0Å

e4fmjJ1[J:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL ; X-RAY DIFFRACTION 2.4Å

e4fmjM1[M:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL,SIA ; X-RAY DIFFRACTION 2.4Å

e4fmgR1[R:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.1Å

e4fmjH1[H:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,SIA ; X-RAY DIFFRACTION 2.4Å

e4fmgF1[F:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.1Å

e4fmiL1[L:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.0Å

e4fmiH1[H:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.0Å

e4fmiO1[O:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.0Å

e4fmiJ1[J:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.0Å

e4fmjO1[O:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,SIA ; X-RAY DIFFRACTION 2.4Å

e4fmhR1[R:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.85Å

e4fmgD1[D:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.1Å

e4fmiF1[F:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.0Å

e4fmjD1[D:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.4Å

e4fmiM1[M:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL,SIA ; X-RAY DIFFRACTION 2.0Å

e4fmiA1[A:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL,SIA ; X-RAY DIFFRACTION 2.0Å

e4fmjP1[P:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.4Å

e4fmhP1[P:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.85Å

e4jceA1[A:24-288] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

MAJOR CAPSID PROTEIN VP1 ; ligands: GOL ; X-RAY DIFFRACTION 1.9Å

e4jcdC1[C:25-288] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1 ; ligands: GOL ; X-RAY DIFFRACTION 2.0Å

e4jceB1[B:24-288] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

MAJOR CAPSID PROTEIN VP1 ; ligands: GOL ; X-RAY DIFFRACTION 1.9Å

e4jceD1[D:24-288] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

MAJOR CAPSID PROTEIN VP1 ; ligands: EDO,GOL ; X-RAY DIFFRACTION 1.9Å

e4jceE1[E:24-288] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

MAJOR CAPSID PROTEIN VP1 ; ligands: EDO,GOL ; X-RAY DIFFRACTION 1.9Å

e4jcfC1[C:25-288] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1 ; ligands: GOL ; X-RAY DIFFRACTION 2.2Å

e4jcdA1[A:24-288] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1 ; ligands: EDO,GOL ; X-RAY DIFFRACTION 2.0Å

e4jcdB1[B:24-288] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1 ; ligands: GOL ; X-RAY DIFFRACTION 2.0Å

e4jcdD1[D:24-288] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1 ; ligands: EDO,GOL ; X-RAY DIFFRACTION 2.0Å

e4jcdE1[E:24-288] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1 ; ligands: EDO,GOL ; X-RAY DIFFRACTION 2.0Å

e4jceC1[C:25-288] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

MAJOR CAPSID PROTEIN VP1 ; ligands: GOL ; X-RAY DIFFRACTION 1.9Å

e4jcfA1[A:25-288] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1 ; ligands: EDO,GOL ; X-RAY DIFFRACTION 2.2Å

e4jcfB1[B:24-288] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1 ; ligands: GOL ; X-RAY DIFFRACTION 2.2Å

e4jcfD1[D:24-288] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1 ; ligands: GOL ; X-RAY DIFFRACTION 2.2Å

e4jcfE1[E:24-288] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1 ; ligands: GOL ; X-RAY DIFFRACTION 2.2Å

e4mj0C1[C:34-295] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 capsid protein ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.7Å

e4mj1B1[B:34-297] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 CAPSID PROTEIN ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.0Å

e4mj0E1[E:32-298] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 capsid protein ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.7Å

e4mj1A1[A:33-296] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 CAPSID PROTEIN ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.0Å

e4mj0A1[A:32-296] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 capsid protein ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.7Å

e4mj0B1[B:33-297] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 capsid protein ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.7Å

e4mj0D1[D:32-298] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 capsid protein ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.7Å

e4mj1C1[C:43-295] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 CAPSID PROTEIN ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.0Å

e4mj1D1[D:32-297] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 CAPSID PROTEIN ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.0Å

e4mj1E1[E:32-297] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 CAPSID PROTEIN ; ligands: CL,GOL ; X-RAY DIFFRACTION 2.0Å

e4mbxB1[B:25-300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

MAJOR CAPSID PROTEIN VP1 ; ligands: CA,EDO ; X-RAY DIFFRACTION 1.92Å

e4mbxC1[C:25-300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

MAJOR CAPSID PROTEIN VP1 ; ligands: CA,EDO ; X-RAY DIFFRACTION 1.92Å

e4mbxD1[D:25-299] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

MAJOR CAPSID PROTEIN VP1 ; ligands: CA,EDO ; X-RAY DIFFRACTION 1.92Å

e4mbxF1[F:25-298] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

MAJOR CAPSID PROTEIN VP1 ; ligands: CA,EDO ; X-RAY DIFFRACTION 1.92Å

e4mbxH1[H:25-298] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

MAJOR CAPSID PROTEIN VP1 ; ligands: CA,EDO ; X-RAY DIFFRACTION 1.92Å

e4mbxI1[I:25-299] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

MAJOR CAPSID PROTEIN VP1 ; ligands: CA,EDO ; X-RAY DIFFRACTION 1.92Å

e4mbxJ1[J:25-300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

MAJOR CAPSID PROTEIN VP1 ; ligands: CA,EDO ; X-RAY DIFFRACTION 1.92Å

e4mbyB1[B:25-299] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major Capsid Protein VP1 ; ligands: CA,CL,EDO,IPA ; X-RAY DIFFRACTION 1.48Å

e4mbyC1[C:25-299] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major Capsid Protein VP1 ; ligands: CA,CL,EDO,IPA ; X-RAY DIFFRACTION 1.48Å

e4mbyD1[D:25-299] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major Capsid Protein VP1 ; ligands: CA,CL,EDO,IPA ; X-RAY DIFFRACTION 1.48Å

e4mbyF1[F:25-298] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major Capsid Protein VP1 ; ligands: CA,CL,EDO,IPA ; X-RAY DIFFRACTION 1.48Å

e4mbyH1[H:25-298] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major Capsid Protein VP1 ; ligands: CA,CL,EDO,IPA ; X-RAY DIFFRACTION 1.48Å

e4mbyI1[I:25-298] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major Capsid Protein VP1 ; ligands: CA,CL,EDO,IPA ; X-RAY DIFFRACTION 1.48Å

e4mbyJ1[J:25-299] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major Capsid Protein VP1 ; ligands: CA,CL,EDO,IPA ; X-RAY DIFFRACTION 1.48Å

e4mbzB1[B:25-299] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major Capsid Protein VP1 ; ligands: CA,CL,EDO,IPA ; X-RAY DIFFRACTION 1.75Å

e4mbzC1[C:25-299] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major Capsid Protein VP1 ; ligands: CA,CL,EDO,IPA ; X-RAY DIFFRACTION 1.75Å

e4mbzD1[D:26-299] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major Capsid Protein VP1 ; ligands: CA,CL,EDO,IPA ; X-RAY DIFFRACTION 1.75Å

e4mbzF1[F:25-298] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major Capsid Protein VP1 ; ligands: CA,CL,EDO,IPA ; X-RAY DIFFRACTION 1.75Å

e4mbzH1[H:25-298] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major Capsid Protein VP1 ; ligands: CA,CL,EDO,IPA ; X-RAY DIFFRACTION 1.75Å

e4mbzI1[I:25-299] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major Capsid Protein VP1 ; ligands: CA,CL,EDO,IPA ; X-RAY DIFFRACTION 1.75Å

e4mbzG1[G:25-298] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major Capsid Protein VP1 ; ligands: CA,CL,EDO,IPA ; X-RAY DIFFRACTION 1.75Å

e4mbxG1[G:25-297] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

MAJOR CAPSID PROTEIN VP1 ; ligands: CA,EDO ; X-RAY DIFFRACTION 1.92Å

e4mbyG1[G:25-297] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major Capsid Protein VP1 ; ligands: CA,CL,EDO,IPA ; X-RAY DIFFRACTION 1.48Å

e4mbxA1[A:25-301] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

MAJOR CAPSID PROTEIN VP1 ; ligands: CA,EDO ; X-RAY DIFFRACTION 1.92Å

e4mbxE1[E:25-301] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

MAJOR CAPSID PROTEIN VP1 ; ligands: CA,EDO ; X-RAY DIFFRACTION 1.92Å

e4mbyA1[A:25-301] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major Capsid Protein VP1 ; ligands: CA,CL,EDO,IPA ; X-RAY DIFFRACTION 1.48Å

e4mbyE1[E:25-301] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major Capsid Protein VP1 ; ligands: CA,CL,EDO,IPA ; X-RAY DIFFRACTION 1.48Å

e4mbzA1[A:25-301] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major Capsid Protein VP1 ; ligands: CA,CL,EDO,IPA ; X-RAY DIFFRACTION 1.75Å

e4mbzE1[E:25-301] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major Capsid Protein VP1 ; ligands: CA,CL,EDO,IPA ; X-RAY DIFFRACTION 1.75Å

e4mbzJ1[J:24-300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major Capsid Protein VP1 ; ligands: CA,CL,EDO,IPA ; X-RAY DIFFRACTION 1.75Å

e4poqA1[A:33-303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CA,EDO,IPA ; X-RAY DIFFRACTION 2.0Å

e4poqB1[B:33-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CA,EDO,IPA ; X-RAY DIFFRACTION 2.0Å

e4poqC1[C:33-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CA,EDO,IPA ; X-RAY DIFFRACTION 2.0Å

e4poqD1[D:33-303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CA,EDO,IPA ; X-RAY DIFFRACTION 2.0Å

e4poqE1[E:33-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CA,EDO,IPA ; X-RAY DIFFRACTION 2.0Å

e4poqF1[F:33-304] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CA,EDO,IPA ; X-RAY DIFFRACTION 2.0Å

e4poqG1[G:33-303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CA,EDO,IPA ; X-RAY DIFFRACTION 2.0Å

e4poqH1[H:31-304] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CA,IPA ; X-RAY DIFFRACTION 2.0Å

e4poqI1[I:31-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CA,EDO,IPA ; X-RAY DIFFRACTION 2.0Å

e4poqJ1[J:32-304] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CA,EDO,IPA ; X-RAY DIFFRACTION 2.0Å

e4porA1[A:33-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CA,EDO,IPA ; X-RAY DIFFRACTION 2.09Å

e4porB1[B:33-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CA,EDO,IPA ; X-RAY DIFFRACTION 2.09Å

e4porC1[C:33-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CA,EDO,IPA ; X-RAY DIFFRACTION 2.09Å

e4porD1[D:33-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CA,EDO,IPA ; X-RAY DIFFRACTION 2.09Å

e4porE1[E:33-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: CA,EDO,IPA ; X-RAY DIFFRACTION 2.09Å

Next
F: Unmapped domains

Pseudo group of domains that do not map to PFam family profiles. Domains inside should not be considered as in one family.

X: Glycosyl hydrolase domain-like

some similarity with Ig fold

beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain

beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander

a+b two layersone alpha-helix layer and one beta-sheet layer

a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers

a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers

a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers

a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain

a/b barrelsrepeating beta-alpha units form a barrel

a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers

mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions

few secondary structure elementsstabilized by cofactors or disulfides

extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes