Evolutionary classification of protein domain structures

alpha arraysalpha-helix arrays with mainly perpendicular helices

alpha bundlesalpha-helix bundles with mainly parallel helices

alpha superhelicesrepeating alpha-helix hairpins form a superhelix

alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain

alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix

beta barrelssingle beta-sheet folded upon itself to form a barrel

beta meanderssingle beta-sheet with mainly meander topology

beta sandwichestwo beta-sheets stacked together to form a sandwich

beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain

beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander

a+b two layersone alpha-helix layer and one beta-sheet layer

a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers

X: SRF-like

X: Fe,Mn superoxide dismutase (SOD)-C

X: Nigritoxin middle domain

X: Mitochondrial complex I, B17.2 subunit

X: Gelsolin-like

X: GIY-YIG endonuclease

X: N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1

X: Regulatory factor Nef

X: Hut operon positive regulatory protein HutP

X: Mitochondrial homologous recombination protein 1

X: Nucleotidyltransferase-like

X: N-terminal a+b domain in adenylylcyclase toxin

X: a+b domain in Rap/Ran-GAP (Pfam 02145)

X: C-terminal segment in 5'->3' exoribonucleases

X: Profilin-like

H: sensor domains

T: sensor domains

F: dCache_1_like

F: GAF_3

F: HrcA

F: bHLH-MYC_N

F: PAS_8

F: GdpP_PAS

F: Mcp40H-20_sensor

F: PAS_9

F: Rv3651-like_C

F: HK_sensor_dom_bact

F: PAS_11

F: IclR

F: PhoQ_Sensor

F: CusS

F: dCache_1

F: PAS_4

F: PHY

F: DUF484

F: Autoind_bind

F: CodY

F: sCache_4

F: YkuI_C

F: LuxQ-periplasm

F: ScfRs

F: HODM_asu-like

F: PAS_2

F: PAS_3

F: HK-GC-Chemotax_sensor

PF22309

F: PdeA_PAS

PF21815 CL0183

F: AbfS_sensor

PF18225 CL0183

F: Rv3651-like_middle

PF18621 CL0183

F: PAS

PF00989 CL0183

F: GAF

PF01590 CL0161

Representatives:

e2o9cA1[A:135-321] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Bacteriophytochrome ; ligands: LBV ; X-RAY DIFFRACTION 1.450Å

e1f5mA1[A:4-179] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

GAF ; ligands: BR ; X-RAY DIFFRACTION 1.9Å

e2oolA1[A:140-333] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Sensor protein ; ligands: LBV ; X-RAY DIFFRACTION 2.100Å

e5nm3A3[A:134-323] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Bacteriophytochrome ; ligands: LBV ; X-RAY DIFFRACTION 3.300Å

e5nwnC1[C:134-323] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Bacteriophytochrome ; ligands: LBV ; X-RAY DIFFRACTION 3.600Å

e5nwnD2[D:134-323] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Bacteriophytochrome ; ligands: LBV ; X-RAY DIFFRACTION 3.600Å

e5nfxA2[A:135-322] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Bacteriophytochrome ; ligands: ACT,LBV,MPD ; X-RAY DIFFRACTION 1.340Å

e5nm3B2[B:134-323] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Bacteriophytochrome ; ligands: LBV ; X-RAY DIFFRACTION 3.300Å

e5nm3C2[C:134-323] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Bacteriophytochrome ; ligands: LBV ; X-RAY DIFFRACTION 3.300Å

e5nm3D2[D:134-323] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Bacteriophytochrome ; ligands: LBV ; X-RAY DIFFRACTION 3.300Å

e5nwnA3[A:134-323] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Bacteriophytochrome ; ligands: LBV ; X-RAY DIFFRACTION 3.600Å

e5nwnB3[B:134-323] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Bacteriophytochrome ; ligands: LBV ; X-RAY DIFFRACTION 3.600Å

e6fhtB1[B:134-323] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Bacteriophytochrome,Adenylate cyclase ; ligands: LBV,SO4 ; X-RAY DIFFRACTION 2.350Å

e5m85A1[A:441-599] Image Pymol Jmol Links: PDB, SCOP, CATH DOI

Sensory transduction histidine kinase ; ligands: 3CX,CYC,NA,TRS ; X-RAY DIFFRACTION 2.10Å

e5m82A1[A:440-597] Image Pymol Jmol Links: PDB, SCOP, CATH DOI

Sensory transduction histidine kinase ; ligands: 3CX,CYC,NA ; X-RAY DIFFRACTION 1.86Å

e5uyrB2[B:120-319] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Bacteriophytochrome ; ligands: BLA ; X-RAY DIFFRACTION 3.45Å

e5uyrA4[A:120-319] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Bacteriophytochrome ; ligands: BLA ; X-RAY DIFFRACTION 3.45Å

e6bapA1[A:134-323] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Photoreceptor-histidine kinase BphP ; ligands: BLR ; X-RAY DIFFRACTION 2.65Å

e6ftdA1[A:133-324] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Bacteriophytochrome ; ligands: ACT,LBV,MPD ; X-RAY DIFFRACTION 1.40Å

e6et7B2[B:121-316] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Diguanylate cyclase (GGDEF) domain-containing protein ; ligands: CL,LBV ; X-RAY DIFFRACTION 2.850Å

e6bafA1[A:132-318] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Photoreceptor-histidine kinase BphP ; ligands: BLR ; X-RAY DIFFRACTION 2.23Å

e6bakA2[A:132-318] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Photoreceptor-histidine kinase BphP ; ligands: BLR ; X-RAY DIFFRACTION 2.03Å

e6baoA2[A:134-323] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Photoreceptor-histidine kinase BphP ; ligands: BLR ; X-RAY DIFFRACTION 2.18Å

e6baoB3[B:134-323] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Photoreceptor-histidine kinase BphP ; ligands: BLR ; X-RAY DIFFRACTION 2.18Å

e6bapB3[B:134-323] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Photoreceptor-histidine kinase BphP ; ligands: BLR ; X-RAY DIFFRACTION 2.65Å

e6bapC1[C:134-323] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Photoreceptor-histidine kinase BphP ; ligands: BLR ; X-RAY DIFFRACTION 2.65Å

e6bayA2[A:134-323] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Photoreceptor-histidine kinase BphP ; ligands: BLR ; X-RAY DIFFRACTION 3.15Å

e6bayB1[B:134-323] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Photoreceptor-histidine kinase BphP ; ligands: BLR ; X-RAY DIFFRACTION 3.15Å

e6bayC2[C:134-323] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Photoreceptor-histidine kinase BphP ; ligands: BLR ; X-RAY DIFFRACTION 3.15Å

e6ftdB2[B:133-323] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Bacteriophytochrome ; ligands: ACT,LBV,MPD ; X-RAY DIFFRACTION 1.40Å

e6et7A1[A:121-316] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Diguanylate cyclase (GGDEF) domain-containing protein ; ligands: CL,LBV ; X-RAY DIFFRACTION 2.850Å

e6g1yA2[A:123-309] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Bacteriophytochrome protein ; ligands: EL5 ; X-RAY DIFFRACTION 2.500Å

e6g1yB1[B:122-310] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Bacteriophytochrome protein ; ligands: EL5 ; X-RAY DIFFRACTION 2.500Å

e6g1zA1[A:126-310] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Bacteriophytochrome protein ; ligands: EL5,ETE,SO4 ; X-RAY DIFFRACTION 2.030Å

e6g20A1[A:127-310] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Bacteriophytochrome protein ; ligands: CL,EL5,ETE,GOL,SO4 ; X-RAY DIFFRACTION 2.16Å

e6g1zB3[B:125-309] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Bacteriophytochrome protein ; ligands: EL5,ETE,GOL,SO4 ; X-RAY DIFFRACTION 2.030Å

e6g20B2[B:125-309] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Bacteriophytochrome protein ; ligands: CL,EL5,ETE,GOL,SO4 ; X-RAY DIFFRACTION 2.16Å

e6mghD1[D:-4-147] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

miRFP670nano ; ligands: JRA ; X-RAY DIFFRACTION 1.950Å

e6mghA1[A:1-147] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

miRFP670nano ; ligands: IPA,JRA ; X-RAY DIFFRACTION 1.950Å

e6mghB1[B:2-147] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

miRFP670nano ; ligands: GOL,IPA,JRA ; X-RAY DIFFRACTION 1.950Å

e6mghC1[C:2-146] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

miRFP670nano ; ligands: GOL,IPA,JRA ; X-RAY DIFFRACTION 1.950Å

e6mghE1[E:-2-146] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

miRFP670nano ; ligands: JRA ; X-RAY DIFFRACTION 1.950Å

e6mghF1[F:1-146] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

miRFP670nano ; ligands: JRA ; X-RAY DIFFRACTION 1.950Å

e6mghG1[G:-4-147] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

miRFP670nano ; ligands: GOL,JRA ; X-RAY DIFFRACTION 1.950Å

e6mghH1[H:-4-146] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

miRFP670nano ; ligands: GOL,JRA ; X-RAY DIFFRACTION 1.950Å

e5oy5A2[A:127-317] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

BphP1 ; ligands: BLA ; X-RAY DIFFRACTION 2.6Å

e5zohA1[A:220-393] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Methyl-accepting chemotaxis protein ; ligands: BLA,GOL ; X-RAY DIFFRACTION 1.6Å

e6ob8B2[B:138-311] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Dual sensor histidine kinase ; ligands: CYC ; X-RAY DIFFRACTION 2.150Å

e6oapA1[A:138-308] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Dual sensor histidine kinase ; ligands: CYC ; X-RAY DIFFRACTION 1.970Å

e6oapB1[B:138-308] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Dual sensor histidine kinase ; ligands: CYC ; X-RAY DIFFRACTION 1.970Å

e6oaqA1[A:138-308] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Dual sensor histidine kinase ; ligands: CYC ; X-RAY DIFFRACTION 2.50Å

e6oaqB1[B:138-307] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Dual sensor histidine kinase ; ligands: CYC ; X-RAY DIFFRACTION 2.50Å

e6ob8A1[A:138-308] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Dual sensor histidine kinase ; ligands: CYC ; X-RAY DIFFRACTION 2.150Å

e6ptqA3[A:120-308] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Photoreceptor-histidine kinase BphP ; ligands: EL5 ; X-RAY DIFFRACTION 2.1Å

e6ptqB1[B:120-308] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Photoreceptor-histidine kinase BphP ; ligands: EL5 ; X-RAY DIFFRACTION 2.1Å

e6ptxA2[A:120-308] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Photoreceptor-histidine kinase BphP ; ligands: EL5 ; X-RAY DIFFRACTION 1.65Å

e6ptxB2[B:120-308] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Photoreceptor-histidine kinase BphP ; ligands: EL5 ; X-RAY DIFFRACTION 1.65Å

e6pu2A1[A:120-308] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Photoreceptor-histidine kinase BphP ; ligands: EL5 ; X-RAY DIFFRACTION 2.2Å

e6pu2B2[B:120-308] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Photoreceptor-histidine kinase BphP ; ligands: EL5 ; X-RAY DIFFRACTION 2.2Å

e6sawA2[A:119-312] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Diguanylate cyclase (GGDEF) domain-containing protein ; ligands: CL,LBV ; X-RAY DIFFRACTION 3.000Å

e6oeiA1[A:128-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Spindle pole body component SPC42,Sigma-54-dependent transcriptional regulator ; ligands: MPD ; X-RAY DIFFRACTION 2.550Å

e6ndoA1[A:122-315] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Bacteriophytochrome ; ligands: BLA ; X-RAY DIFFRACTION 3.58Å

e6ndpA3[A:122-315] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Bacteriophytochrome ; ligands: BLA ; X-RAY DIFFRACTION 3.89Å

e6sawB2[B:119-312] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Diguanylate cyclase (GGDEF) domain-containing protein ; ligands: CL,LBV ; X-RAY DIFFRACTION 3.000Å

e6sawC1[C:119-312] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Diguanylate cyclase (GGDEF) domain-containing protein ; ligands: CL,LBV ; X-RAY DIFFRACTION 3.000Å

e6sawD1[D:119-312] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Diguanylate cyclase (GGDEF) domain-containing protein ; ligands: CL,LBV ; X-RAY DIFFRACTION 3.000Å

e6sawE2[E:119-312] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Diguanylate cyclase (GGDEF) domain-containing protein ; ligands: CL,LBV ; X-RAY DIFFRACTION 3.000Å

e6sawF2[F:119-312] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Diguanylate cyclase (GGDEF) domain-containing protein ; ligands: CL,LBV ; X-RAY DIFFRACTION 3.000Å

e6sawG2[G:119-312] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Diguanylate cyclase (GGDEF) domain-containing protein ; ligands: CL,LBV ; X-RAY DIFFRACTION 3.000Å

e6sawH1[H:119-312] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Diguanylate cyclase (GGDEF) domain-containing protein ; ligands: CL,LBV ; X-RAY DIFFRACTION 3.000Å

e6saxB2[B:119-312] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Diguanylate cyclase (GGDEF) domain-containing protein ; ligands: LBV ; X-RAY DIFFRACTION 2.400Å

e6saxA1[A:119-312] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Diguanylate cyclase (GGDEF) domain-containing protein ; ligands: LBV ; X-RAY DIFFRACTION 2.400Å

e6ndoB2[B:120-319] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Bacteriophytochrome ; ligands: BLA ; X-RAY DIFFRACTION 3.58Å

e6ndpB1[B:120-319] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Bacteriophytochrome ; ligands: BLA ; X-RAY DIFFRACTION 3.89Å

e6p58A1[A:435-584] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Methyl-accepting chemotaxis protein ; ligands: MG,VRB ; X-RAY DIFFRACTION 1.500Å

e6p58B1[B:435-584] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Methyl-accepting chemotaxis protein ; ligands: EDO,MG,VRB ; X-RAY DIFFRACTION 1.500Å

e6pruA1[A:435-584] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Methyl-accepting chemotaxis protein ; ligands: CL,EDO,MG,VRB ; X-RAY DIFFRACTION 1.5390Å

e6pruB1[B:435-584] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Methyl-accepting chemotaxis protein ; ligands: CL,EDO,MG,PEG,VRB ; X-RAY DIFFRACTION 1.5390Å

e6pryA1[A:435-584] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Methyl-accepting chemotaxis protein ; ligands: CL,MG,VRB ; X-RAY DIFFRACTION 1.50Å

e6pryB1[B:435-584] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Methyl-accepting chemotaxis protein ; ligands: CL,MG,PEG,VRB ; X-RAY DIFFRACTION 1.50Å

e6uppA1[A:435-584] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Methyl-accepting chemotaxis protein ; ligands: EDO,MG,VRB ; X-RAY DIFFRACTION 1.560Å

e6uppB1[B:435-584] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Methyl-accepting chemotaxis protein ; ligands: EDO,MG,VRB ; X-RAY DIFFRACTION 1.560Å

e6r27C2[C:126-313] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Bacteriophytochrome protein ; ligands: JQ2 ; X-RAY DIFFRACTION 3.40Å

e6t3lB1[B:134-324] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Bacteriophytochrome ; ligands: LBV ; X-RAY DIFFRACTION 2.07Å

e6r26A2[A:126-313] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Bacteriophytochrome protein ; ligands: CA,JQ2 ; X-RAY DIFFRACTION 3.11Å

e6r27A2[A:126-313] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Bacteriophytochrome protein ; ligands: JQ2 ; X-RAY DIFFRACTION 3.40Å

e6r27B3[B:126-313] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Bacteriophytochrome protein ; ligands: JQ2 ; X-RAY DIFFRACTION 3.40Å

e6r27D3[D:126-313] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Bacteriophytochrome protein ; ligands: JQ2 ; X-RAY DIFFRACTION 3.40Å

e6t3uB1[B:134-324] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Bacteriophytochrome ; ligands: LBV ; X-RAY DIFFRACTION 2.21Å

e6t3lA2[A:133-324] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Bacteriophytochrome ; ligands: LBV ; X-RAY DIFFRACTION 2.07Å

e6t3uA2[A:133-324] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Bacteriophytochrome ; ligands: LBV ; X-RAY DIFFRACTION 2.21Å

e6tbyAAA1[AAA:238-451] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Phytochrome ; ligands: BME,CYC,GOL,PEG ; X-RAY DIFFRACTION 1.8Å

e6ozaA1[A:11-204] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Two-component sensor histidine kinase ; ligands: CYC ; X-RAY DIFFRACTION 3.0Å

e6ozaB1[B:11-204] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Two-component sensor histidine kinase ; ligands: CYC ; X-RAY DIFFRACTION 3.0Å

e6ozaC1[C:11-204] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Two-component sensor histidine kinase ; ligands: CYC ; X-RAY DIFFRACTION 3.0Å

e6ozbA1[A:11-204] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Two-component sensor histidine kinase ; ligands: PEB ; X-RAY DIFFRACTION 1.800Å

e6ozbB1[B:11-203] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Two-component sensor histidine kinase ; ligands: PEB ; X-RAY DIFFRACTION 1.800Å

e6ozbC1[C:11-203] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Two-component sensor histidine kinase ; ligands: PEB ; X-RAY DIFFRACTION 1.800Å

e6tc7BBB2[BBB:195-406] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Phytochrome ; ligands: CYC,PEG ; X-RAY DIFFRACTION 2.13Å

e6tl4A1[A:215-446] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Phytochrome ; ligands: CYC ; X-RAY DIFFRACTION 2.9Å

e6tc5AAA1[AAA:238-453] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Phytochrome ; ligands: BME,O6E ; X-RAY DIFFRACTION 2.1Å

e6tc7AAA1[AAA:195-406] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Phytochrome ; ligands: CYC,PEG ; X-RAY DIFFRACTION 2.13Å

e6xhgA1[A:523-699] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

JSC1_58120g3 ; ligands: BVX ; X-RAY DIFFRACTION 2.300Å

e6xhgB1[B:523-699] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

JSC1_58120g3 ; ligands: BVX ; X-RAY DIFFRACTION 2.300Å

e6xhhA1[A:521-699] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

JSC1_58120g3 ; ligands: EDO,M1V ; X-RAY DIFFRACTION 1.500Å

e6xhhB1[B:521-700] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

JSC1_58120g3 ; ligands: EDO,M1V ; X-RAY DIFFRACTION 1.500Å

e6pl0A1[A:120-319] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Bacteriophytochrome ; ligands: BLA ; X-RAY DIFFRACTION 2.96Å

e6pl0B4[B:120-319] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Bacteriophytochrome ; ligands: BLA ; X-RAY DIFFRACTION 2.96Å

e6x88B2[B:55-232] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Cone cGMP-specific 3',5'-cyclic phosphodiesterase subunit alpha' ; X-RAY DIFFRACTION 3.1997Å

e6x88B1[B:233-283,B:311-453] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Cone cGMP-specific 3',5'-cyclic phosphodiesterase subunit alpha' ; X-RAY DIFFRACTION 3.1997Å

e6x88A1[A:48-239] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Cone cGMP-specific 3',5'-cyclic phosphodiesterase subunit alpha' ; X-RAY DIFFRACTION 3.1997Å

e6x88A2[A:240-283,A:311-453] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Cone cGMP-specific 3',5'-cyclic phosphodiesterase subunit alpha' ; X-RAY DIFFRACTION 3.1997Å

e6uv8A1[A:860-1021] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Multi-sensor signal transduction histidine kinase ; ligands: CYC ; X-RAY DIFFRACTION 2.7Å

e6uvbA1[A:860-1021] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Multi-sensor signal transduction histidine kinase ; ligands: CYC ; X-RAY DIFFRACTION 2.900Å

e7jriA1[A:120-308] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Photoreceptor-histidine kinase BphP ; ligands: 3Q8 ; X-RAY DIFFRACTION 2.1Å

e7jriB3[B:120-308] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Photoreceptor-histidine kinase BphP ; ligands: 3Q8 ; X-RAY DIFFRACTION 2.1Å

e7jsnB1[B:229-449] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit beta ; ELECTRON MICROSCOPY

e7jsnB3[B:46-235] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit beta ; ligands: 35G ; ELECTRON MICROSCOPY

e7ckvA1[A:164-313] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RcaE ; ligands: CYC ; X-RAY DIFFRACTION 1.63Å

e7ckvB1[B:164-313] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RcaE ; ligands: CYC ; X-RAY DIFFRACTION 1.63Å

e7lscA1[A:-13-147] Image Pymol Jmol Links: PDB, SCOP, CATH

miRFP670nano3 ; ligands: JRA ; X-RAY DIFFRACTION 1.800Å

e7lsdB1[B:-4-147] Image Pymol Jmol Links: PDB, SCOP, CATH

miRFP718nano ; ligands: BLA ; X-RAY DIFFRACTION 1.700Å

e7rzwA1[A:219-450] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Phytochrome B ; ligands: O6E ; ELECTRON MICROSCOPY

e7rzwB1[B:219-453] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Phytochrome B ; ligands: O6E ; ELECTRON MICROSCOPY

e7z9dA2[A:131-322] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Bacteriophytochrome ; ligands: ACT,LBV,MPD ; X-RAY DIFFRACTION 1.880Å

e7z9eA2[A:131-322] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Bacteriophytochrome ; ligands: ACT,LBV,MPD ; X-RAY DIFFRACTION 1.480Å

e7lscB1[B:1-147] Image Pymol Jmol Links: PDB, SCOP, CATH

miRFP670nano3 ; ligands: JRA ; X-RAY DIFFRACTION 1.800Å

e7lscC1[C:-3-147] Image Pymol Jmol Links: PDB, SCOP, CATH

miRFP670nano3 ; ligands: JRA ; X-RAY DIFFRACTION 1.800Å

e7lscD1[D:3-147] Image Pymol Jmol Links: PDB, SCOP, CATH

miRFP670nano3 ; ligands: JRA ; X-RAY DIFFRACTION 1.800Å

e7lsdA1[A:-3-147] Image Pymol Jmol Links: PDB, SCOP, CATH

miRFP718nano ; ligands: BLA ; X-RAY DIFFRACTION 1.700Å

e7lsdC1[C:-4-147] Image Pymol Jmol Links: PDB, SCOP, CATH

miRFP718nano ; ligands: BLA ; X-RAY DIFFRACTION 1.700Å

e7lsdD1[D:-2-147] Image Pymol Jmol Links: PDB, SCOP, CATH

miRFP718nano ; ligands: BLA ; X-RAY DIFFRACTION 1.700Å

e6mzbB2[B:229-449] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit beta ; ELECTRON MICROSCOPY

e6mzbB3[B:46-235] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit beta ; ligands: 35G ; ELECTRON MICROSCOPY

e8avwA4[A:128-325] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Bacteriophytochrome,Response regulator ; ligands: LBV ; ELECTRON MICROSCOPY

e8avwB3[B:128-325] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Bacteriophytochrome,Response regulator ; ligands: LBV ; ELECTRON MICROSCOPY

e8avvA1[A:134-323] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Bacteriophytochrome,Response regulator ; ligands: LBV ; ELECTRON MICROSCOPY

e8avvB3[B:134-323] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Bacteriophytochrome,Response regulator ; ligands: LBV ; ELECTRON MICROSCOPY

e8avxA3[A:134-323] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Bacteriophytochrome,Response regulator ; ligands: BLA ; ELECTRON MICROSCOPY

e8avxB2[B:134-323] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Bacteriophytochrome,Response regulator ; ligands: BLA ; ELECTRON MICROSCOPY

e8afkA2[A:122-315] Image Pymol Jmol Links: PDB, SCOP, CATH

; ligands: CYC ; X-RAY DIFFRACTION 2.015Å

e8borC3[C:134-323] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ligands: LBV ; X-RAY DIFFRACTION 2.3Å

e8f5zA1[A:195-411] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ligands: O6E ; ELECTRON MICROSCOPY

e8iffB1[B:195-411] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ligands: O6E ; ELECTRON MICROSCOPY

e8isjA1[A:195-411] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ligands: O6E ; ELECTRON MICROSCOPY

e8iskB1[B:196-413] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ligands: O6E ; ELECTRON MICROSCOPY

e4lrxC1[C:12-194] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

PTS-dependent dihydroxyacetone kinase operon regulatory protein ; X-RAY DIFFRACTION 3.250Å

e4lrxD2[D:12-194] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

PTS-dependent dihydroxyacetone kinase operon regulatory protein ; X-RAY DIFFRACTION 3.250Å

e4lryC2[C:13-194] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

PTS-dependent dihydroxyacetone kinase operon regulatory protein ; X-RAY DIFFRACTION 2.830Å

e4lryD2[D:13-194] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

PTS-dependent dihydroxyacetone kinase operon regulatory protein ; X-RAY DIFFRACTION 2.830Å

e4lrzE2[E:13-194] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

PTS-dependent dihydroxyacetone kinase operon regulatory protein ; X-RAY DIFFRACTION 2.320Å

e4lrzF2[F:13-194] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

PTS-dependent dihydroxyacetone kinase operon regulatory protein ; X-RAY DIFFRACTION 2.320Å

e4lrzG2[G:13-194] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

PTS-dependent dihydroxyacetone kinase operon regulatory protein ; X-RAY DIFFRACTION 2.320Å

e4lrzH2[H:13-194] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

PTS-dependent dihydroxyacetone kinase operon regulatory protein ; X-RAY DIFFRACTION 2.320Å

e5w10C1[C:2-174] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

cGMP-specific phosphodiesterase ; ligands: CMP ; X-RAY DIFFRACTION 2.15Å

e3lfvB1[B:147-329] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

cGMP-specific 3',5'-cyclic phosphodiesterase ; X-RAY DIFFRACTION 2.8Å

e3lfvB2[B:330-520] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

cGMP-specific 3',5'-cyclic phosphodiesterase ; X-RAY DIFFRACTION 2.8Å

e1mc0A2[A:402-555] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

3',5'-CYCLIC NUCLEOTIDE PHOSPHODIESTERASE 2A ; ligands: PCG ; X-RAY DIFFRACTION 2.86Å

e2k2nA1[A:31-200] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Sensor protein ; ligands: CYC ; SOLUTION NMR

F: DraK_HK_N

F: Rv3651-like_N

F: CpxA_peri

F: CHASE

F: PdtaS_GAF

F: Per3-like_PAS-A

F: RisS_PPD

F: HNOBA

F: GAF_2

F: MCP-like_PDC_1

F: SpoVT_C

F: HK_sensor

F: MLTR_LBD

F: sCache_3_2

F: HisK_sensor

F: sCache_like

F: PAS_10

F: DUF3365

F: Unmapped domains

Pseudo group of domains that do not map to PFam family profiles. Domains inside should not be considered as in one family.

H: profilin-like

H: Pa0076-like

H: YagB/YeeU/YfjZ-like

H: YNR034W-A-like

H: GlcG-like

H: a+b domain in beta-lactamase/transpeptidase-like proteins

H: FLJ32549 C-terminal domain-like

H: LapD periplasmic domain

H: Stage II sporulation protein SA

H: N-terminal domain of Apc beta-subunit

X: Sensor domain of histidine kinase VC_A0565

X: Nonstructural protein V

X: Putative sensor histidine kinase domain

X: a+b domain in antivirulence factor

X: HIT-like

X: DUF1827-like

X: PR-1-like

X: L-sulfolactate dehydrogenase-like

X: AraD-like aldolase/epimerase

X: N-acetylmuramoyl-L-alanine amidase-like

X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4

X: Cryptic loci regulator 2 N-terminal domain

X: thylakoid acid phosphatase domain-related

X: Thioredoxin-like

X: Thioredoxin-like domain in RNase E

X: Major capsid protein GP7

X: Bacillus chorismate mutase-like

X: CofE-like

X: a+b domain in conserved hypothetical protein Rv3899c

X: Cytidine deaminase-like

X: Phospholipase D/nuclease

X: Phoshotransferase/anion transport protein

X: Mid-cell-anchored protein Z (MapZ) extracellular domain 2

X: Class II aaRS and biotin synthetases

X: Protein interacting with HSP90 1 (Pih1) N-terminal domain

X: Suppressor of Fused, N-terminal domain

X: Suppressor of Fused, C-terminal domain

X: Hypothetical protein MTH1880

X: Hypothetical protein Ta1206-like

X: CytB endotoxin-like (Pfam 01338)

X: Coproporphyrinogen III oxidase

X: Mog1p/PsbP-like

X: Two-component system yycF/yycG regulatory protein yycH-like

X: B12-dependent (class II) ribonucleotide reductase, insertion domain

X: CorA soluble domain-like

X: DeoB insert domain-like

X: DisA nucleotide-binding domain

X: Coronavirus spike protein receptor-binding domain

X: C-terminal domain in DHH phosphoesterases

X: PlyCB

X: Surfactant protein C BRICHOS domain

X: Late genes activator p4

X: AF1514-like

X: YehU-like

X: Nat/Ivy

X: Integron cassette protein VCH_CASS3

X: Polymerase basic protein 2 cap-binding domain

X: A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases

X: ESX-1 secretion system protein eccB1 modular domains

X: Fibrinogen binding protein a+b domain

X: C-terminal domain of N-acetylglucosaminyltransferase-V

a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers

a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers

a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain

a/b barrelsrepeating beta-alpha units form a barrel

a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers

mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions

few secondary structure elementsstabilized by cofactors or disulfides

extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes

special