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X - Possible homology level

H - Homology level

T - Topology level

F - Family level

* - Provisional representative


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Evolutionary classification of protein domain structures

alpha arraysalpha-helix arrays with mainly perpendicular helices

alpha bundlesalpha-helix bundles with mainly parallel helices

alpha superhelicesrepeating alpha-helix hairpins form a superhelix

alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain

alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix

beta barrelssingle beta-sheet folded upon itself to form a barrel

beta meanderssingle beta-sheet with mainly meander topology

beta sandwichestwo beta-sheets stacked together to form a sandwich

beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain

beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander

a+b two layersone alpha-helix layer and one beta-sheet layer

a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers

X: Nucleotidyltransferase-like
H: Nucleotidyltransferase
T: Nucleotidyltransferase
F: DNA_pol_B_thumb,DNA_pol_B_palm

PF14791 PF14792

Representatives:

e2bcqA3[A:386-575] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE LAMBDA ; ligands: EDO,MG,NA,PPV ; X-RAY DIFFRACTION 1.65Å

e2fmpA3[A:149-335] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE BETA ; ligands: DCT,MG,NA ; X-RAY DIFFRACTION 1.65Å

e4klqA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: DTP,MN,PPV ; X-RAY DIFFRACTION 1.999Å

e4klsA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: DTP,MN,PPV ; X-RAY DIFFRACTION 1.978Å

e4jwnA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: CL,DUP,MG ; X-RAY DIFFRACTION 2.39Å

e4kldA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: CA,CL,DCP ; X-RAY DIFFRACTION 1.916Å

e4kleA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: DCP,MG,PPV ; X-RAY DIFFRACTION 1.970Å

e4klfA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: CL,DCP,MG,PPV ; X-RAY DIFFRACTION 1.850Å

e4klgA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: CL,MG,NA,PPV ; X-RAY DIFFRACTION 1.700Å

e4klhA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: CL,MN,PPV ; X-RAY DIFFRACTION 1.876Å

e4kliA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: CL,MG,NA,PPV ; X-RAY DIFFRACTION 1.597Å

e4kljA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: CL,MG,NA,PPV ; X-RAY DIFFRACTION 1.799Å

e4kllA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: CL,MG,NA,PPV ; X-RAY DIFFRACTION 1.841Å

e4klmA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: CL,MG,NA,PPV ; X-RAY DIFFRACTION 1.747Å

e4kloA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: MG,NA,PPV ; X-RAY DIFFRACTION 1.845Å

e4klpA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH Obsolete PDB

e4kltA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: MN,PPV ; X-RAY DIFFRACTION 1.979Å

e3mghA3[A:386-575] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase lambda ; X-RAY DIFFRACTION 2.30Å

e3mghC3[C:386-575] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase lambda ; ligands: NA ; X-RAY DIFFRACTION 2.30Å

e3mgiA3[A:386-575] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase lambda ; ligands: D3T,MG ; X-RAY DIFFRACTION 2.60Å

e3pmlA3[A:386-575] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase lambda ; ligands: 1GC,MG ; X-RAY DIFFRACTION 2.6Å

e3pmlB3[B:386-575] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase lambda ; ligands: 1GC,MG ; X-RAY DIFFRACTION 2.6Å

e3pmnA3[A:386-575] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase lambda ; ligands: 1GC,CL,MG,MN ; X-RAY DIFFRACTION 2.2Å

e3pncA3[A:386-575] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase lambda ; ligands: 1GC,MG,NA,TRS ; X-RAY DIFFRACTION 2.000Å

e3upqA3[A:386-575] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE LAMBDA ; ligands: MN,SO4,ZAN ; X-RAY DIFFRACTION 1.95Å

e3uq0A3[A:386-575] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE LAMBDA ; ligands: CL,EDO,SO4 ; X-RAY DIFFRACTION 2.14Å

e3uq2A3[A:386-575] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE LAMBDA ; ligands: MG,PPV ; X-RAY DIFFRACTION 2.25Å

e4fo6A3[A:386-575] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE LAMBDA ; ligands: CL,F2A,MG,MN ; X-RAY DIFFRACTION 2.01Å

e4nlkA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: 0KX,MG ; X-RAY DIFFRACTION 2.494Å

e4m47A3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: MG,NA,XG4 ; X-RAY DIFFRACTION 2.37Å

e4nlzA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: MG ; X-RAY DIFFRACTION 2.683Å

e4nm2A3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; X-RAY DIFFRACTION 2.524Å

e4nlnA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: MG,PO4 ; X-RAY DIFFRACTION 2.261Å

e4m2yA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE BETA ; X-RAY DIFFRACTION 2.27Å

e4nm1A3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: MG,PO4 ; X-RAY DIFFRACTION 2.415Å

e4lzdA3[A:289-494] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed DNA/RNA polymerase mu ; ligands: CL,EDO,IMD ; X-RAY DIFFRACTION 1.8490Å

e4gxiA8[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: NA ; X-RAY DIFFRACTION 1.95Å

e4f5nA8[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: 6CF ; X-RAY DIFFRACTION 1.8Å

e4f5oA8[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: 6CF,MG ; X-RAY DIFFRACTION 2.0Å

e4f5rA8[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: 6CF ; X-RAY DIFFRACTION 2.2Å

e4gxkA8[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: F2A,MN ; X-RAY DIFFRACTION 1.998Å

e4f5qA8[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: 6CF,MN ; X-RAY DIFFRACTION 2.25Å

e4gxjA8[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: 6CF,MN ; X-RAY DIFFRACTION 2.196Å

e3uxpB8[B:149-334] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: D3T,NA ; X-RAY DIFFRACTION 2.723Å

e4f5rB8[B:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: 6CF,MN,NA ; X-RAY DIFFRACTION 2.2Å

e3v7jA8[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH

DNA polymerase beta ; ligands: CL,NA ; X-RAY DIFFRACTION 2.25Å

e3uxnA8[A:149-334] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; X-RAY DIFFRACTION 2.5Å

e3uxoA8[A:149-334] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; X-RAY DIFFRACTION 2.077Å

e3uxoB5[B:149-334] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; X-RAY DIFFRACTION 2.077Å

e3uxnB5[B:149-334] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; X-RAY DIFFRACTION 2.5Å

e3v7lA5[A:149-334] Image Pymol Jmol Links: PDB, SCOP, CATH

DNA polymerase beta ; ligands: CL,NA,SO4 ; X-RAY DIFFRACTION 2.66Å

e4m9jA5[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: CL,DUP,MG ; X-RAY DIFFRACTION 2.038Å

e4m9nA5[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: DTP,MG ; X-RAY DIFFRACTION 2.275Å

e4i2iA4[A:303-380,A:400-510] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA nucleotidylexotransferase ; ligands: AP5,MG,ZN ; X-RAY DIFFRACTION 2.50Å

e3rjkA5[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE BETA ; ligands: 6CF,CL,MG ; X-RAY DIFFRACTION 2.1Å

e4docA5[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE BETA ; ligands: CL,G1C,MG,NA ; X-RAY DIFFRACTION 1.95Å

e3tfsA5[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE BETA ; ligands: CL,FHA,MG ; X-RAY DIFFRACTION 2.0Å

e3rjiA5[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE BETA ; ligands: 6CF,CL,MG ; X-RAY DIFFRACTION 2.3Å

e4doaA5[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE BETA ; ligands: CL,FHG,MG,NA ; X-RAY DIFFRACTION 2.05Å

e4dobA5[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE BETA ; ligands: CL,GRC,MG,NA ; X-RAY DIFFRACTION 2.05Å

e3rjfA5[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE BETA ; ligands: CL,F2A,MG ; X-RAY DIFFRACTION 2.3Å

e3rjhA5[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE BETA ; ligands: 6CF,CL,MG ; X-RAY DIFFRACTION 2.2Å

e4lvsA5[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: DTP,MN ; X-RAY DIFFRACTION 2.000Å

e3rjgA5[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE BETA ; X-RAY DIFFRACTION 2.0Å

e3rjjA5[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE BETA ; X-RAY DIFFRACTION 2.0Å

e4ppxA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; X-RAY DIFFRACTION 2.080Å

e4mf2A2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; X-RAY DIFFRACTION 2.4Å

e4mfcA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: 0KX,MG ; X-RAY DIFFRACTION 2.13Å

e4mffA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: 1FZ,MG ; X-RAY DIFFRACTION 2.55Å

e4nxzA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: 1FZ,MN ; X-RAY DIFFRACTION 2.557Å

e4ny8A2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: 0KX,MN ; X-RAY DIFFRACTION 2.246Å

e4lzgA1[A:289-364,A:385-494] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed DNA/RNA polymerase mu ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.599Å

e4m04A1[A:289-364,A:384-494] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed DNA/RNA polymerase mu ; ligands: DUP,EDO,EPE,MG ; X-RAY DIFFRACTION 1.898Å

e4m0aA1[A:289-364,A:385-494] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed DNA/RNA polymerase mu ; ligands: EDO,EPE,MG,MN,PPV ; X-RAY DIFFRACTION 1.850Å

e4o9mA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA POLYMERASE BETA ; X-RAY DIFFRACTION 2.29Å

e4p2hA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: 1FZ,MN ; X-RAY DIFFRACTION 1.990Å

e4o5cA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; X-RAY DIFFRACTION 2.363Å

e4o5eA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: 1FZ,MG ; X-RAY DIFFRACTION 2.532Å

e4o5kA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: 0KX,MG ; X-RAY DIFFRACTION 2.058Å

e4k4gA1[A:386-580] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase lambda ; X-RAY DIFFRACTION 2.15Å

e4k4gE1[E:386-576] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase lambda ; X-RAY DIFFRACTION 2.15Å

e4k4gI1[I:386-581] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase lambda ; X-RAY DIFFRACTION 2.15Å

e4k4gM1[M:386-578] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase lambda ; X-RAY DIFFRACTION 2.15Å

e4k4hA1[A:386-581] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase lambda ; X-RAY DIFFRACTION 2.10Å

e4k4hE1[E:386-576] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase lambda ; X-RAY DIFFRACTION 2.10Å

e4k4hI1[I:386-580] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase lambda ; X-RAY DIFFRACTION 2.10Å

e4k4hM1[M:386-577] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase lambda ; X-RAY DIFFRACTION 2.10Å

e4k4iA1[A:386-582] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase lambda ; X-RAY DIFFRACTION 2.25Å

e4k4iE1[E:386-577] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase lambda ; X-RAY DIFFRACTION 2.25Å

e4k4iI1[I:386-580] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase lambda ; X-RAY DIFFRACTION 2.25Å

e4k4iM1[M:386-577] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase lambda ; X-RAY DIFFRACTION 2.25Å

e4p4mA2[A:145-376] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: D3T,MG ; X-RAY DIFFRACTION 1.918Å

e4p4pA2[A:145-376] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; X-RAY DIFFRACTION 2.297Å

e4p4oA1[A:152-376] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: D3T,MG ; X-RAY DIFFRACTION 2.300Å

e4mf8A1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH

DNA polymerase beta ; ligands: MG,PO4 ; X-RAY DIFFRACTION 2.32Å

e4mfaA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH

DNA polymerase beta ; ligands: MG,PO4 ; X-RAY DIFFRACTION 2.27Å

e4m9lA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: DCP,MG,NA ; X-RAY DIFFRACTION 2.091Å

e4m9gA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: CL ; X-RAY DIFFRACTION 2.010Å

e4m9hA1[A:149-334] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: CL,TTP ; X-RAY DIFFRACTION 2.394Å

e4phaA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: 0KX,MG ; X-RAY DIFFRACTION 2.52Å

e4phdA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: 0KX,MN ; X-RAY DIFFRACTION 2.21Å

e4pgxA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: 1FZ,MN ; X-RAY DIFFRACTION 2.077Å

e4pgqA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: 1FZ,MG ; X-RAY DIFFRACTION 2.0493Å

e4tupA1[A:149-332] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; X-RAY DIFFRACTION 1.8Å

e4turA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: 0KX,MG ; X-RAY DIFFRACTION 2.169Å

e4tuqA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: 0KX,MG ; X-RAY DIFFRACTION 2.367Å

e4tusA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: 0KX,CPT,MN ; X-RAY DIFFRACTION 2.420Å

e2ihmB1[B:289-365,B:387-496] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase mu ; ligands: D3T,MG ; X-RAY DIFFRACTION 2.4Å

e4r65A2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: CL,DUP,MG ; X-RAY DIFFRACTION 1.950Å

e4r63A1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: NA ; X-RAY DIFFRACTION 1.850Å

e4r64A2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; X-RAY DIFFRACTION 2.200Å

e4r66A2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: CL,DUP,MN ; X-RAY DIFFRACTION 2.250Å

e4ub1A2[A:149-332] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; X-RAY DIFFRACTION 2.341Å

e4uawA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: 8DG,CA ; X-RAY DIFFRACTION 1.9Å

e4uayA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: MG,NA,PPV ; X-RAY DIFFRACTION 1.98Å

e4uazA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: 8DG,MG,PPV ; X-RAY DIFFRACTION 1.88Å

e4ub2A1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; X-RAY DIFFRACTION 2.51Å

e4ub3A1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: MG,NA,PPV ; X-RAY DIFFRACTION 2.06Å

e4ub4A1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: CA,DGT ; X-RAY DIFFRACTION 1.954Å

e4ub5A1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: 8DG,MN ; X-RAY DIFFRACTION 2.15Å

e4ubbA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: 8DG,MG,PPV ; X-RAY DIFFRACTION 1.85Å

e4ubcA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: 8DG,CA ; X-RAY DIFFRACTION 1.96Å

e4rq0A1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: ACT,CL,MG,NA,PPV ; X-RAY DIFFRACTION 2.2Å

e4rq1A3[A:149-333] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; X-RAY DIFFRACTION 2.7Å

e4rq2A2[A:149-341] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: MN,NA,PPV ; X-RAY DIFFRACTION 2.20Å

e4rq8A2[A:149-341] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: ACT,CL,MN,NA,PPV ; X-RAY DIFFRACTION 2.0Å

e4rpxA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: ACT,CA,CL,DCP,NA ; X-RAY DIFFRACTION 1.90Å

e4rpyA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: ACT,CL,DCP,MG,NA,PPV ; X-RAY DIFFRACTION 1.90Å

e4rpzA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: CL,DCP,MG,NA,PPV ; X-RAY DIFFRACTION 2.19Å

e4rq3A1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: ACT,CA,CL,DTP,NA ; X-RAY DIFFRACTION 2.00Å

e4rq4A3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: ACT,CL,DTP,MG,PPV ; X-RAY DIFFRACTION 2.10Å

e4rq5A3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: ACT,CL,DTP,MG,PPV ; X-RAY DIFFRACTION 2.32Å

e4rq6A1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: ACT,MG,NA,PPV ; X-RAY DIFFRACTION 2.25Å

e4rq7A1[A:149-334] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: CL ; X-RAY DIFFRACTION 2.00Å

e4pgyA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH

DNA polymerase beta ; X-RAY DIFFRACTION 2.26Å

e4pheA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH

DNA polymerase beta ; ligands: MG,XG4 ; X-RAY DIFFRACTION 2.15Å

e4ph5A2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH

DNA polymerase beta ; ligands: MG,PO4 ; X-RAY DIFFRACTION 2.55Å

e4phpA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH

DNA polymerase beta ; ligands: MN,XG4 ; X-RAY DIFFRACTION 2.60Å

e4qzeA3[A:303-381,A:402-510] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA nucleotidylexotransferase ; ligands: DCT,MG ; X-RAY DIFFRACTION 2.25Å

e4qzfA3[A:303-381,A:402-510] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA nucleotidylexotransferase ; ligands: DCT,MG ; X-RAY DIFFRACTION 2.6Å

e4rt2A1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: MG,N6T,NA ; X-RAY DIFFRACTION 1.920Å

e4rt3A3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: C6T,CL,MG,NA ; X-RAY DIFFRACTION 1.920Å

e4ycxA3[A:289-494] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed DNA/RNA polymerase mu ; ligands: GOL,IMD,MG ; X-RAY DIFFRACTION 2.100Å

e4yd1A2[A:289-494] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed DNA/RNA polymerase mu ; ligands: CL,DUP,EDO,GOL,MG ; X-RAY DIFFRACTION 1.750Å

e4yd2A2[A:289-363,A:386-494] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA-directed DNA/RNA polymerase mu ; ligands: CL,NA,PPV ; X-RAY DIFFRACTION 2.20Å

e5bolA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: 1GC,MG ; X-RAY DIFFRACTION 1.980Å

e5bomA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; X-RAY DIFFRACTION 2.000Å

e5bpcA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: F2A,MN ; X-RAY DIFFRACTION 2.0Å

e4x5vA2[A:386-575] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase lambda ; ligands: CIT,NA ; X-RAY DIFFRACTION 2.15Å

e5db6A2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; X-RAY DIFFRACTION 2.83Å

e5db7A1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; X-RAY DIFFRACTION 2.22Å

e5db8A2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; X-RAY DIFFRACTION 2.54Å

e5db9A3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; X-RAY DIFFRACTION 2.45Å

e5dbaA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; X-RAY DIFFRACTION 1.97Å

e5dbbA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; X-RAY DIFFRACTION 2.25Å

e5dbcA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; X-RAY DIFFRACTION 2.40Å

e4xusA1[A:386-575] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase lambda ; ligands: DOC,MG,TTP ; X-RAY DIFFRACTION 2.4Å

e4xa5A1[A:386-575] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase lambda ; ligands: 8DG,ACT,GOL,MG ; X-RAY DIFFRACTION 1.9Å

e4ymmA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH

DNA polymerase beta ; X-RAY DIFFRACTION 2.199Å

e4ymnA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: 0KX,MG ; X-RAY DIFFRACTION 2.591Å

e4yn4A3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: 1FZ,MN ; X-RAY DIFFRACTION 2.243Å

e4ymoA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: 0KX,MN ; X-RAY DIFFRACTION 2.148Å

e4z6dA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: 1FZ,MG ; X-RAY DIFFRACTION 2.51Å

e4z6cA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: 0KX,MG ; X-RAY DIFFRACTION 2.677Å

e4z6eA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: 1FZ,MN ; X-RAY DIFFRACTION 2.75Å

e4z6fA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: 1FZ,MN ; X-RAY DIFFRACTION 2.44Å

e5iimA1[A:386-575] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase lambda ; ligands: DUP,NA ; X-RAY DIFFRACTION 1.94Å

e5j0oA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; X-RAY DIFFRACTION 2.000Å

e5j0pA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; X-RAY DIFFRACTION 2.2Å

e5j0qA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; X-RAY DIFFRACTION 2Å

e5j0rA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: NA ; X-RAY DIFFRACTION 2Å

e5j0sA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: NA ; X-RAY DIFFRACTION 2.00Å

e5j0tA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: NA ; X-RAY DIFFRACTION 2.0Å

e5j0uA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: NA ; X-RAY DIFFRACTION 2.1Å

e5j0vA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH

; ligands: NA

e5j0wA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; X-RAY DIFFRACTION 2.4Å

e5j0xA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: NA ; X-RAY DIFFRACTION 2.00Å

e5j0yA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: NA ; X-RAY DIFFRACTION 2Å

e5j29A2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: DUP,MG ; X-RAY DIFFRACTION 2.2Å

e5j2aA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: CL,DUP,MG ; X-RAY DIFFRACTION 2.5Å

e5j2bA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: CL,DUP,MG ; X-RAY DIFFRACTION 2.5Å

e5j2cA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: CL,DUP,MG ; X-RAY DIFFRACTION 2.1Å

e5j2dA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: CL,DUP,MG ; X-RAY DIFFRACTION 2.1Å

e5j2eA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: CL,DUP,MG ; X-RAY DIFFRACTION 2.1Å

e5j2fA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: CL,DUP,MG ; X-RAY DIFFRACTION 2.1Å

e5j2gA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: CL,DUP,MG ; X-RAY DIFFRACTION 2.1Å

e5j2hA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: CL,DUP,MG ; X-RAY DIFFRACTION 2.3Å

e5j2iA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: DUP,MG ; X-RAY DIFFRACTION 2.400Å

e5j2jA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: CL,DUP,MG ; X-RAY DIFFRACTION 2.2Å

e5j2kA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: CL,DUP,MG ; X-RAY DIFFRACTION 2.100Å

e5eozA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: 0KX,MG ; X-RAY DIFFRACTION 2.088Å

e5tzvA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: NA ; X-RAY DIFFRACTION 2.0Å

e5tbaA1[A:149-333] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: 42E,NA,PPV ; X-RAY DIFFRACTION 2.490Å

e5tbbA1[A:149-333] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: 43X,ACT,MN,NA,PPV ; X-RAY DIFFRACTION 2.390Å

e5tbcA1[A:149-333] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: 1RZ,42E,NA ; X-RAY DIFFRACTION 1.850Å

e5tb9A2[A:149-341] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: 1RY,MN,NA ; X-RAY DIFFRACTION 2.490Å

e5tb8A1[A:149-341] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: 1RZ,ACT,CL,MN,NA ; X-RAY DIFFRACTION 2.000Å

e5hhhA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; X-RAY DIFFRACTION 2.36Å

e5hhiA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; X-RAY DIFFRACTION 2.517Å

e5u9hA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; ligands: MN,PPV ; X-RAY DIFFRACTION 1.85Å

e5u8hA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; X-RAY DIFFRACTION 2.150Å

e5u8iA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA polymerase beta ; X-RAY DIFFRACTION 2.450Å

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F: Unmapped domains

Pseudo group of domains that do not map to PFam family profiles. Domains inside should not be considered as in one family.

a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers

a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers

a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain

a/b barrelsrepeating beta-alpha units form a barrel

a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers

mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions

few secondary structure elementsstabilized by cofactors or disulfides

extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes