Evolutionary classification of protein domain structures
alpha arraysalpha-helix arrays with mainly perpendicular helices
alpha bundlesalpha-helix bundles with mainly parallel helices
alpha superhelicesrepeating alpha-helix hairpins form a superhelix
alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain
alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix
beta barrelssingle beta-sheet folded upon itself to form a barrel
beta meanderssingle beta-sheet with mainly meander topology
beta sandwichestwo beta-sheets stacked together to form a sandwich
beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain
beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander
a+b two layersone alpha-helix layer and one beta-sheet layer
a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers
Representatives:
e2bcqA3[A:386-575] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE LAMBDA ; ligands: EDO,MG,NA,PPV ; X-RAY DIFFRACTION 1.65Å
e2fmpA3[A:149-335] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE BETA ; ligands: DCT,MG,NA ; X-RAY DIFFRACTION 1.65Å
e4klqA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: DTP,MN,PPV ; X-RAY DIFFRACTION 1.999Å
e4klsA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: DTP,MN,PPV ; X-RAY DIFFRACTION 1.978Å
e4jwnA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: CL,DUP,MG ; X-RAY DIFFRACTION 2.39Å
e4kldA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: CA,CL,DCP ; X-RAY DIFFRACTION 1.916Å
e4kleA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: DCP,MG,PPV ; X-RAY DIFFRACTION 1.970Å
e4klfA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: CL,DCP,MG,PPV ; X-RAY DIFFRACTION 1.850Å
e4klgA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: CL,MG,NA,PPV ; X-RAY DIFFRACTION 1.700Å
e4klhA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: CL,MN,PPV ; X-RAY DIFFRACTION 1.876Å
e4kliA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: CL,MG,NA,PPV ; X-RAY DIFFRACTION 1.597Å
e4kljA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: CL,MG,NA,PPV ; X-RAY DIFFRACTION 1.799Å
e4kllA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: CL,MG,NA,PPV ; X-RAY DIFFRACTION 1.841Å
e4klmA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: CL,MG,NA,PPV ; X-RAY DIFFRACTION 1.747Å
e4kloA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: MG,NA,PPV ; X-RAY DIFFRACTION 1.845Å
e4klpA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH Obsolete PDB
e4kltA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: MN,PPV ; X-RAY DIFFRACTION 1.979Å
e3mghA3[A:386-575] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase lambda ; X-RAY DIFFRACTION 2.30Å
e3mghC3[C:386-575] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase lambda ; ligands: NA ; X-RAY DIFFRACTION 2.30Å
e3mgiA3[A:386-575] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase lambda ; ligands: D3T,MG ; X-RAY DIFFRACTION 2.60Å
e3pmlA3[A:386-575] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase lambda ; ligands: 1GC,MG ; X-RAY DIFFRACTION 2.6Å
e3pmlB3[B:386-575] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase lambda ; ligands: 1GC,MG ; X-RAY DIFFRACTION 2.6Å
e3pmnA3[A:386-575] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase lambda ; ligands: 1GC,CL,MG,MN ; X-RAY DIFFRACTION 2.2Å
e3pncA3[A:386-575] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase lambda ; ligands: 1GC,MG,NA,TRS ; X-RAY DIFFRACTION 2.000Å
e3upqA3[A:386-575] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE LAMBDA ; ligands: MN,SO4,ZAN ; X-RAY DIFFRACTION 1.95Å
e3uq0A3[A:386-575] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE LAMBDA ; ligands: CL,EDO,SO4 ; X-RAY DIFFRACTION 2.14Å
e3uq2A3[A:386-575] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE LAMBDA ; ligands: MG,PPV ; X-RAY DIFFRACTION 2.25Å
e4fo6A3[A:386-575] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE LAMBDA ; ligands: CL,F2A,MG,MN ; X-RAY DIFFRACTION 2.01Å
e4nlkA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: 0KX,MG ; X-RAY DIFFRACTION 2.494Å
e4m47A3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: MG,NA,XG4 ; X-RAY DIFFRACTION 2.37Å
e4nlzA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: MG ; X-RAY DIFFRACTION 2.683Å
e4nm2A3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; X-RAY DIFFRACTION 2.524Å
e4nlnA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: MG,PO4 ; X-RAY DIFFRACTION 2.261Å
e4m2yA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE BETA ; X-RAY DIFFRACTION 2.27Å
e4nm1A3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: MG,PO4 ; X-RAY DIFFRACTION 2.415Å
e4lzdA3[A:289-494] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed DNA/RNA polymerase mu ; ligands: CL,EDO,IMD ; X-RAY DIFFRACTION 1.8490Å
e4gxiA8[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: NA ; X-RAY DIFFRACTION 1.95Å
e4f5nA8[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: 6CF ; X-RAY DIFFRACTION 1.8Å
e4f5oA8[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: 6CF,MG ; X-RAY DIFFRACTION 2.0Å
e4f5rA8[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: 6CF ; X-RAY DIFFRACTION 2.2Å
e4gxkA8[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: F2A,MN ; X-RAY DIFFRACTION 1.998Å
e4f5qA8[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: 6CF,MN ; X-RAY DIFFRACTION 2.25Å
e4gxjA8[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: 6CF,MN ; X-RAY DIFFRACTION 2.196Å
e3uxpB8[B:149-334] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: D3T,NA ; X-RAY DIFFRACTION 2.723Å
e4f5rB8[B:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: 6CF,MN,NA ; X-RAY DIFFRACTION 2.2Å
e3v7jA8[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH
DNA polymerase beta ; ligands: CL,NA ; X-RAY DIFFRACTION 2.25Å
e3uxnA8[A:149-334] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; X-RAY DIFFRACTION 2.5Å
e3uxoA8[A:149-334] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; X-RAY DIFFRACTION 2.077Å
e3uxoB5[B:149-334] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; X-RAY DIFFRACTION 2.077Å
e3uxnB5[B:149-334] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; X-RAY DIFFRACTION 2.5Å
e3v7lA5[A:149-334] Image Pymol Jmol Links: PDB, SCOP, CATH
DNA polymerase beta ; ligands: CL,NA,SO4 ; X-RAY DIFFRACTION 2.66Å
e4m9jA5[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: CL,DUP,MG ; X-RAY DIFFRACTION 2.038Å
e4m9nA5[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: DTP,MG ; X-RAY DIFFRACTION 2.275Å
e4i2iA4[A:303-380,A:400-510] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA nucleotidylexotransferase ; ligands: AP5,MG,ZN ; X-RAY DIFFRACTION 2.50Å
e3rjkA5[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE BETA ; ligands: 6CF,CL,MG ; X-RAY DIFFRACTION 2.1Å
e4docA5[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE BETA ; ligands: CL,G1C,MG,NA ; X-RAY DIFFRACTION 1.95Å
e3tfsA5[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE BETA ; ligands: CL,FHA,MG ; X-RAY DIFFRACTION 2.0Å
e3rjiA5[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE BETA ; ligands: 6CF,CL,MG ; X-RAY DIFFRACTION 2.3Å
e4doaA5[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE BETA ; ligands: CL,FHG,MG,NA ; X-RAY DIFFRACTION 2.05Å
e4dobA5[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE BETA ; ligands: CL,GRC,MG,NA ; X-RAY DIFFRACTION 2.05Å
e3rjfA5[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE BETA ; ligands: CL,F2A,MG ; X-RAY DIFFRACTION 2.3Å
e3rjhA5[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE BETA ; ligands: 6CF,CL,MG ; X-RAY DIFFRACTION 2.2Å
e4lvsA5[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: DTP,MN ; X-RAY DIFFRACTION 2.000Å
e3rjgA5[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE BETA ; X-RAY DIFFRACTION 2.0Å
e3rjjA5[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE BETA ; X-RAY DIFFRACTION 2.0Å
e4ppxA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; X-RAY DIFFRACTION 2.080Å
e4mf2A2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; X-RAY DIFFRACTION 2.4Å
e4mfcA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: 0KX,MG ; X-RAY DIFFRACTION 2.13Å
e4mffA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: 1FZ,MG ; X-RAY DIFFRACTION 2.55Å
e4nxzA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: 1FZ,MN ; X-RAY DIFFRACTION 2.557Å
e4ny8A2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: 0KX,MN ; X-RAY DIFFRACTION 2.246Å
e4lzgA1[A:289-364,A:385-494] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed DNA/RNA polymerase mu ; ligands: CL,GOL ; X-RAY DIFFRACTION 1.599Å
e4m04A1[A:289-364,A:384-494] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed DNA/RNA polymerase mu ; ligands: DUP,EDO,EPE,MG ; X-RAY DIFFRACTION 1.898Å
e4m0aA1[A:289-364,A:385-494] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed DNA/RNA polymerase mu ; ligands: EDO,EPE,MG,MN,PPV ; X-RAY DIFFRACTION 1.850Å
e4o9mA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA POLYMERASE BETA ; X-RAY DIFFRACTION 2.29Å
e4p2hA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: 1FZ,MN ; X-RAY DIFFRACTION 1.990Å
e4o5cA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; X-RAY DIFFRACTION 2.363Å
e4o5eA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: 1FZ,MG ; X-RAY DIFFRACTION 2.532Å
e4o5kA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: 0KX,MG ; X-RAY DIFFRACTION 2.058Å
e4k4gA1[A:386-580] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase lambda ; X-RAY DIFFRACTION 2.15Å
e4k4gE1[E:386-576] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase lambda ; X-RAY DIFFRACTION 2.15Å
e4k4gI1[I:386-581] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase lambda ; X-RAY DIFFRACTION 2.15Å
e4k4gM1[M:386-578] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase lambda ; X-RAY DIFFRACTION 2.15Å
e4k4hA1[A:386-581] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase lambda ; X-RAY DIFFRACTION 2.10Å
e4k4hE1[E:386-576] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase lambda ; X-RAY DIFFRACTION 2.10Å
e4k4hI1[I:386-580] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase lambda ; X-RAY DIFFRACTION 2.10Å
e4k4hM1[M:386-577] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase lambda ; X-RAY DIFFRACTION 2.10Å
e4k4iA1[A:386-582] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase lambda ; X-RAY DIFFRACTION 2.25Å
e4k4iE1[E:386-577] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase lambda ; X-RAY DIFFRACTION 2.25Å
e4k4iI1[I:386-580] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase lambda ; X-RAY DIFFRACTION 2.25Å
e4k4iM1[M:386-577] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase lambda ; X-RAY DIFFRACTION 2.25Å
e4p4mA2[A:145-376] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: D3T,MG ; X-RAY DIFFRACTION 1.918Å
e4p4pA2[A:145-376] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; X-RAY DIFFRACTION 2.297Å
e4p4oA1[A:152-376] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: D3T,MG ; X-RAY DIFFRACTION 2.300Å
e4mf8A1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH
DNA polymerase beta ; ligands: MG,PO4 ; X-RAY DIFFRACTION 2.32Å
e4mfaA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH
DNA polymerase beta ; ligands: MG,PO4 ; X-RAY DIFFRACTION 2.27Å
e4m9lA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: DCP,MG,NA ; X-RAY DIFFRACTION 2.091Å
e4m9gA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: CL ; X-RAY DIFFRACTION 2.010Å
e4m9hA1[A:149-334] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: CL,TTP ; X-RAY DIFFRACTION 2.394Å
e4phaA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: 0KX,MG ; X-RAY DIFFRACTION 2.52Å
e4phdA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: 0KX,MN ; X-RAY DIFFRACTION 2.21Å
e4pgxA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: 1FZ,MN ; X-RAY DIFFRACTION 2.077Å
e4pgqA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: 1FZ,MG ; X-RAY DIFFRACTION 2.0493Å
e4tupA1[A:149-332] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; X-RAY DIFFRACTION 1.8Å
e4turA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: 0KX,MG ; X-RAY DIFFRACTION 2.169Å
e4tuqA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: 0KX,MG ; X-RAY DIFFRACTION 2.367Å
e4tusA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: 0KX,CPT,MN ; X-RAY DIFFRACTION 2.420Å
e2ihmB1[B:289-365,B:387-496] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase mu ; ligands: D3T,MG ; X-RAY DIFFRACTION 2.4Å
e4r65A2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: CL,DUP,MG ; X-RAY DIFFRACTION 1.950Å
e4r63A1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: NA ; X-RAY DIFFRACTION 1.850Å
e4r64A2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; X-RAY DIFFRACTION 2.200Å
e4r66A2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: CL,DUP,MN ; X-RAY DIFFRACTION 2.250Å
e4ub1A2[A:149-332] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; X-RAY DIFFRACTION 2.341Å
e4uawA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: 8DG,CA ; X-RAY DIFFRACTION 1.9Å
e4uayA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: MG,NA,PPV ; X-RAY DIFFRACTION 1.98Å
e4uazA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: 8DG,MG,PPV ; X-RAY DIFFRACTION 1.88Å
e4ub2A1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; X-RAY DIFFRACTION 2.51Å
e4ub3A1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: MG,NA,PPV ; X-RAY DIFFRACTION 2.06Å
e4ub4A1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: CA,DGT ; X-RAY DIFFRACTION 1.954Å
e4ub5A1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: 8DG,MN ; X-RAY DIFFRACTION 2.15Å
e4ubbA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: 8DG,MG,PPV ; X-RAY DIFFRACTION 1.85Å
e4ubcA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: 8DG,CA ; X-RAY DIFFRACTION 1.96Å
e4rq0A1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: ACT,CL,MG,NA,PPV ; X-RAY DIFFRACTION 2.2Å
e4rq1A3[A:149-333] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; X-RAY DIFFRACTION 2.7Å
e4rq2A2[A:149-341] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: MN,NA,PPV ; X-RAY DIFFRACTION 2.20Å
e4rq8A2[A:149-341] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: ACT,CL,MN,NA,PPV ; X-RAY DIFFRACTION 2.0Å
e4rpxA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: ACT,CA,CL,DCP,NA ; X-RAY DIFFRACTION 1.90Å
e4rpyA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: ACT,CL,DCP,MG,NA,PPV ; X-RAY DIFFRACTION 1.90Å
e4rpzA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: CL,DCP,MG,NA,PPV ; X-RAY DIFFRACTION 2.19Å
e4rq3A1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: ACT,CA,CL,DTP,NA ; X-RAY DIFFRACTION 2.00Å
e4rq4A3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: ACT,CL,DTP,MG,PPV ; X-RAY DIFFRACTION 2.10Å
e4rq5A3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: ACT,CL,DTP,MG,PPV ; X-RAY DIFFRACTION 2.32Å
e4rq6A1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: ACT,MG,NA,PPV ; X-RAY DIFFRACTION 2.25Å
e4rq7A1[A:149-334] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: CL ; X-RAY DIFFRACTION 2.00Å
e4pgyA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH
DNA polymerase beta ; X-RAY DIFFRACTION 2.26Å
e4pheA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH
DNA polymerase beta ; ligands: MG,XG4 ; X-RAY DIFFRACTION 2.15Å
e4ph5A2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH
DNA polymerase beta ; ligands: MG,PO4 ; X-RAY DIFFRACTION 2.55Å
e4phpA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH
DNA polymerase beta ; ligands: MN,XG4 ; X-RAY DIFFRACTION 2.60Å
e4qzeA3[A:303-381,A:402-510] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA nucleotidylexotransferase ; ligands: DCT,MG ; X-RAY DIFFRACTION 2.25Å
e4qzfA3[A:303-381,A:402-510] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA nucleotidylexotransferase ; ligands: DCT,MG ; X-RAY DIFFRACTION 2.6Å
e4rt2A1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: MG,N6T,NA ; X-RAY DIFFRACTION 1.920Å
e4rt3A3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: C6T,CL,MG,NA ; X-RAY DIFFRACTION 1.920Å
e4ycxA3[A:289-494] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed DNA/RNA polymerase mu ; ligands: GOL,IMD,MG ; X-RAY DIFFRACTION 2.100Å
e4yd1A2[A:289-494] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed DNA/RNA polymerase mu ; ligands: CL,DUP,EDO,GOL,MG ; X-RAY DIFFRACTION 1.750Å
e4yd2A2[A:289-363,A:386-494] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed DNA/RNA polymerase mu ; ligands: CL,NA,PPV ; X-RAY DIFFRACTION 2.20Å
e5bolA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: 1GC,MG ; X-RAY DIFFRACTION 1.980Å
e5bomA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; X-RAY DIFFRACTION 2.000Å
e5bpcA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: F2A,MN ; X-RAY DIFFRACTION 2.0Å
e4x5vA2[A:386-575] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase lambda ; ligands: CIT,NA ; X-RAY DIFFRACTION 2.15Å
e5db6A2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; X-RAY DIFFRACTION 2.83Å
e5db7A1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; X-RAY DIFFRACTION 2.22Å
e5db8A2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; X-RAY DIFFRACTION 2.54Å
e5db9A3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; X-RAY DIFFRACTION 2.45Å
e5dbaA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; X-RAY DIFFRACTION 1.97Å
e5dbbA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; X-RAY DIFFRACTION 2.25Å
e5dbcA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; X-RAY DIFFRACTION 2.40Å
e4xusA1[A:386-575] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase lambda ; ligands: DOC,MG,TTP ; X-RAY DIFFRACTION 2.4Å
e4xa5A1[A:386-575] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase lambda ; ligands: 8DG,ACT,GOL,MG ; X-RAY DIFFRACTION 1.9Å
e4ymmA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH
DNA polymerase beta ; X-RAY DIFFRACTION 2.199Å
e4ymnA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: 0KX,MG ; X-RAY DIFFRACTION 2.591Å
e4yn4A3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: 1FZ,MN ; X-RAY DIFFRACTION 2.243Å
e4ymoA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: 0KX,MN ; X-RAY DIFFRACTION 2.148Å
e4z6dA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: 1FZ,MG ; X-RAY DIFFRACTION 2.51Å
e4z6cA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: 0KX,MG ; X-RAY DIFFRACTION 2.677Å
e4z6eA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: 1FZ,MN ; X-RAY DIFFRACTION 2.75Å
e4z6fA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: 1FZ,MN ; X-RAY DIFFRACTION 2.44Å
e5iimA1[A:386-575] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase lambda ; ligands: DUP,NA ; X-RAY DIFFRACTION 1.94Å
e5j0oA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; X-RAY DIFFRACTION 2.000Å
e5j0pA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; X-RAY DIFFRACTION 2.2Å
e5j0qA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; X-RAY DIFFRACTION 2Å
e5j0rA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: NA ; X-RAY DIFFRACTION 2Å
e5j0sA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: NA ; X-RAY DIFFRACTION 2.00Å
e5j0tA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: NA ; X-RAY DIFFRACTION 2.0Å
e5j0uA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: NA ; X-RAY DIFFRACTION 2.1Å
e5j0vA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH
; ligands: NA
e5j0wA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; X-RAY DIFFRACTION 2.4Å
e5j0xA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: NA ; X-RAY DIFFRACTION 2.00Å
e5j0yA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: NA ; X-RAY DIFFRACTION 2Å
e5j29A2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: DUP,MG ; X-RAY DIFFRACTION 2.2Å
e5j2aA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: CL,DUP,MG ; X-RAY DIFFRACTION 2.5Å
e5j2bA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: CL,DUP,MG ; X-RAY DIFFRACTION 2.5Å
e5j2cA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: CL,DUP,MG ; X-RAY DIFFRACTION 2.1Å
e5j2dA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: CL,DUP,MG ; X-RAY DIFFRACTION 2.1Å
e5j2eA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: CL,DUP,MG ; X-RAY DIFFRACTION 2.1Å
e5j2fA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: CL,DUP,MG ; X-RAY DIFFRACTION 2.1Å
e5j2gA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: CL,DUP,MG ; X-RAY DIFFRACTION 2.1Å
e5j2hA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: CL,DUP,MG ; X-RAY DIFFRACTION 2.3Å
e5j2iA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: DUP,MG ; X-RAY DIFFRACTION 2.400Å
e5j2jA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: CL,DUP,MG ; X-RAY DIFFRACTION 2.2Å
e5j2kA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: CL,DUP,MG ; X-RAY DIFFRACTION 2.100Å
e5eozA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: 0KX,MG ; X-RAY DIFFRACTION 2.088Å
e5tzvA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: NA ; X-RAY DIFFRACTION 2.0Å
e5tbaA1[A:149-333] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: 42E,NA,PPV ; X-RAY DIFFRACTION 2.490Å
e5tbbA1[A:149-333] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: 43X,ACT,MN,NA,PPV ; X-RAY DIFFRACTION 2.390Å
e5tbcA1[A:149-333] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: 1RZ,42E,NA ; X-RAY DIFFRACTION 1.850Å
e5tb9A2[A:149-341] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: 1RY,MN,NA ; X-RAY DIFFRACTION 2.490Å
e5tb8A1[A:149-341] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: 1RZ,ACT,CL,MN,NA ; X-RAY DIFFRACTION 2.000Å
e5hhhA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; X-RAY DIFFRACTION 2.36Å
e5hhiA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; X-RAY DIFFRACTION 2.517Å
e5u9hA1[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; ligands: MN,PPV ; X-RAY DIFFRACTION 1.85Å
e5u8hA3[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; X-RAY DIFFRACTION 2.150Å
e5u8iA2[A:149-335] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA polymerase beta ; X-RAY DIFFRACTION 2.450Å
Previous NextPseudo group of domains that do not map to PFam family profiles. Domains inside should not be considered as in one family.
a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers
a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers
a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain
a/b barrelsrepeating beta-alpha units form a barrel
a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers
mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions
few secondary structure elementsstabilized by cofactors or disulfides
extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes