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X - Possible homology level

H - Homology level

T - Topology level

F - Family level

* - Provisional representative


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Evolutionary classification of protein domain structures

alpha arraysalpha-helix arrays with mainly perpendicular helices

alpha bundlesalpha-helix bundles with mainly parallel helices

X: Rhomboid-like
H: Rhomboid-like
T: Rhomboid-like
F: Rhomboid

PF01694 CL0207

Representatives:

e3b45A1[A:91-270] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

GLPG ; ligands: BNG ; X-RAY DIFFRACTION 1.9Å

e2nr9A1[A:4-192] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Protein glpG homolog ; ligands: PA6,PQE ; X-RAY DIFFRACTION 2.1Å

e8ab5B1[B:93-270] Image Pymol Jmol Links: PDB, SCOP, CATH

; X-RAY DIFFRACTION 2.400Å

e2o7lA1[A:93-270] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

PROTEIN GLPG ; ligands: BNG ; X-RAY DIFFRACTION 2.5Å

e2irvA1[A:92-270] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Protein glpG ; ligands: LDA ; X-RAY DIFFRACTION 2.3Å

e2nrfA1[A:91-270] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Protein GlpG ; X-RAY DIFFRACTION 2.600Å

e2nrfB1[B:91-270] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Protein GlpG ; X-RAY DIFFRACTION 2.600Å

e2ic8A1[A:91-270] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Protein glpG ; ligands: BNG ; X-RAY DIFFRACTION 2.1Å

e2irvB1[B:93-270] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Protein glpG ; ligands: LDA,LMT,PGV,PO4 ; X-RAY DIFFRACTION 2.3Å

e3odjA1[A:8-134,A:166-195] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rhomboid protease glpG ; X-RAY DIFFRACTION 2.84Å

e2xovA1[A:91-271] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RHOMBOID PROTEASE GLPG ; ligands: BNG,GOL ; X-RAY DIFFRACTION 1.65Å

e3ubbA1[A:91-270] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rhomboid protease glpG ; ligands: 3UB ; X-RAY DIFFRACTION 2.5Å

e3txtA1[A:92-270] Image Pymol Jmol Links: PDB, SCOP, CATH

Rhomboid protease glpG ; ligands: DFP ; X-RAY DIFFRACTION 2.3Å

e3zebA1[A:92-270] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RHOMBOID PROTEASE GLPG ; ligands: BNG,CL,SV1 ; X-RAY DIFFRACTION 2.20Å

e4h1dA1[A:92-270] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RHOMBOID PROTEASE GLPG ; ligands: DFP ; X-RAY DIFFRACTION 2.9Å

e3b44A1[A:91-270] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

glpG ; ligands: BNG ; X-RAY DIFFRACTION 1.7Å

e2xowA1[A:92-270] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RHOMBOID PROTEASE GLPG ; ligands: BNG,ISM ; X-RAY DIFFRACTION 2.09Å

e2xtuA1[A:91-271] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RHOMBOID PROTEASE GLPG ; ligands: BNG ; X-RAY DIFFRACTION 1.85Å

e2xtvA1[A:93-272] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RHOMBOID PROTEASE GLPG ; ligands: MC3 ; X-RAY DIFFRACTION 1.70Å

e3zmhA1[A:91-270] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RHOMBOID PROTEASE GLPG ; ligands: 78C,BNG,CL,L62 ; X-RAY DIFFRACTION 2.30Å

e3zmjA1[A:92-269] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RHOMBOID PROTEASE GLPG ; ligands: BNG,CL,L61 ; X-RAY DIFFRACTION 2.30Å

e3zmiA1[A:92-265] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RHOMBOID PROTEASE GLPG ; ligands: BNG,L6C ; X-RAY DIFFRACTION 2.20Å

e3zotA1[A:92-268] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RHOMBOID PROTEASE GLPG ; ligands: BNG,CL,L6C ; X-RAY DIFFRACTION 2.40Å

e4njnA1[A:91-272] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RHOMBOID PROTEASE GLPG ; X-RAY DIFFRACTION 2.4Å

e4njpA1[A:91-272] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RHOMBOID PROTEASE GLPG ; X-RAY DIFFRACTION 2.4Å

e4qnzA1[A:90-271] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rhomboid protease GlpG ; ligands: BNG,CL ; X-RAY DIFFRACTION 2.55Å

e4qo0A1[A:90-271] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rhomboid protease GlpG ; ligands: BNG,CL ; X-RAY DIFFRACTION 2.9Å

e4qo2A1[A:90-271] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rhomboid protease GlpG ; ligands: BNG,CL ; X-RAY DIFFRACTION 2.1Å

e5f5jA1[A:92-272] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rhomboid protease GlpG ; X-RAY DIFFRACTION 2.300Å

e5f5kA1[A:93-272] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rhomboid protease GlpG ; X-RAY DIFFRACTION 2.3Å

e5f5bA1[A:91-272] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rhomboid protease GlpG ; X-RAY DIFFRACTION 2.000Å

e5mtfA1[A:91-271] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rhomboid protease GlpG ; ligands: BNG,CL ; X-RAY DIFFRACTION 1.787Å

e5mt6A1[A:91-270] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rhomboid protease GlpG ; ligands: BNG ; X-RAY DIFFRACTION 2.16Å

e5mt7A1[A:91-270] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rhomboid protease GlpG ; X-RAY DIFFRACTION 2.05Å

e5mt8A1[A:92-270] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rhomboid protease GlpG ; ligands: BNG,CL ; X-RAY DIFFRACTION 1.95Å

e6pj4A1[A:91-272] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rhomboid protease GlpG ; X-RAY DIFFRACTION 2.30Å

e6pj9A1[A:93-272] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rhomboid protease GlpG ; X-RAY DIFFRACTION 2.50Å

e6pjaA1[A:93-272] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rhomboid protease GlpG ; X-RAY DIFFRACTION 2.50Å

e6pjpA1[A:93-271] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rhomboid protease GlpG ; X-RAY DIFFRACTION 2.40Å

e6pjrA1[A:93-272] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rhomboid protease GlpG ; ligands: CL ; X-RAY DIFFRACTION 2.30Å

e6pj5A1[A:91-272] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rhomboid protease GlpG ; X-RAY DIFFRACTION 2.3Å

e6pj7A1[A:92-272] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rhomboid protease GlpG ; X-RAY DIFFRACTION 2.30Å

e6pj8A1[A:92-272] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rhomboid protease GlpG ; X-RAY DIFFRACTION 2.30Å

e6pjuA1[A:93-271] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rhomboid protease GlpG ; X-RAY DIFFRACTION 2.50Å

e6pjqA1[A:92-271] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rhomboid protease GlpG ; X-RAY DIFFRACTION 2.50Å

e6vj8A1[A:93-271] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rhomboid family intramembrane serine protease GlpG ; X-RAY DIFFRACTION 2.30Å

e6vj9A1[A:93-271] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rhomboid family intramembrane serine protease GlpG ; X-RAY DIFFRACTION 2.30Å

e6xroA1[A:91-272] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rhomboid protease GlpG ; ligands: B2A,CL,NA ; X-RAY DIFFRACTION 2.03Å

e6xrpA1[A:92-271] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rhomboid protease GlpG ; ligands: V87 ; X-RAY DIFFRACTION 2.30Å

e8ab5A1[A:93-270] Image Pymol Jmol Links: PDB, SCOP, CATH

; X-RAY DIFFRACTION 2.400Å

alpha superhelicesrepeating alpha-helix hairpins form a superhelix

alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain

alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix

beta barrelssingle beta-sheet folded upon itself to form a barrel

beta meanderssingle beta-sheet with mainly meander topology

beta sandwichestwo beta-sheets stacked together to form a sandwich

beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain

beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander

a+b two layersone alpha-helix layer and one beta-sheet layer

a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers

a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers

a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers

a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain

a/b barrelsrepeating beta-alpha units form a barrel

a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers

mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions

few secondary structure elementsstabilized by cofactors or disulfides

extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes