Evolutionary classification of protein domain structures
alpha arraysalpha-helix arrays with mainly perpendicular helices
alpha bundlesalpha-helix bundles with mainly parallel helices




Representatives:
e5d1wD2[D:93-209]
* nonrep
Image
Pymol
Jmol Links:
PDB,
SCOP,
CATH, PubMed,
DOI
Rv3249c transcriptional regulator ; ligands: PLM ; X-RAY DIFFRACTION 3.590Å
e5d1wA2[A:93-207] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Rv3249c transcriptional regulator ; ligands: PLM ; X-RAY DIFFRACTION 3.590Å
e5d1wC1[C:93-205] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Rv3249c transcriptional regulator ; ligands: PLM ; X-RAY DIFFRACTION 3.590Å
e5d1wF1[F:93-205] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Rv3249c transcriptional regulator ; X-RAY DIFFRACTION 3.590Å
e5d1wB2[B:93-207] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Rv3249c transcriptional regulator ; ligands: PLM ; X-RAY DIFFRACTION 3.590Å
e5d1wE2[E:93-205] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Rv3249c transcriptional regulator ; X-RAY DIFFRACTION 3.590Å
e5ydpA1[A:100-214] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
TetR transcriptional regulatory protein ; X-RAY DIFFRACTION 3.100Å
e5ydpB1[B:100-214] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
TetR transcriptional regulatory protein ; X-RAY DIFFRACTION 3.100Å
e5ydpC1[C:100-217] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
TetR transcriptional regulatory protein ; X-RAY DIFFRACTION 3.100Å

Pseudo group of domains that do not map to PFam family profiles. Domains inside should not be considered as in one family.
alpha superhelicesrepeating alpha-helix hairpins form a superhelix
alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain
alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix
beta barrelssingle beta-sheet folded upon itself to form a barrel
beta meanderssingle beta-sheet with mainly meander topology
beta sandwichestwo beta-sheets stacked together to form a sandwich
beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain
beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander
a+b two layersone alpha-helix layer and one beta-sheet layer
a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers
a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers
a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers
a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain
a/b barrelsrepeating beta-alpha units form a barrel
a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers
mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions
few secondary structure elementsstabilized by cofactors or disulfides
extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes