Evolutionary classification of protein domain structures
alpha arraysalpha-helix arrays with mainly perpendicular helices
alpha bundlesalpha-helix bundles with mainly parallel helices
alpha superhelicesrepeating alpha-helix hairpins form a superhelix
alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain
alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix
beta barrelssingle beta-sheet folded upon itself to form a barrel
beta meanderssingle beta-sheet with mainly meander topology
Representatives:
e2ho2A1[A:253-285] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Amyloid beta A4 protein-binding family B member 1 ; ligands: GOL ; X-RAY DIFFRACTION 1.330Å
e1pinA1[A:6-39] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
PEPTIDYL-PROLYL CIS-TRANS ISOMERASE ; ligands: 1PG,ALA,PRO ; X-RAY DIFFRACTION 1.35Å
e6zyyY1[Y:1134-1176] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Shulin ; ELECTRON MICROSCOPY
e3le4A1[A:298-352] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Microprocessor complex subunit DGCR8 ; X-RAY DIFFRACTION 1.7Å
e2mdwA1[A:1-27] Image Pymol Jmol Links: PDB, SCOP, CATH
Designed protein ; SOLUTION NMR
e2mdwB1[B:1-27] Image Pymol Jmol Links: PDB, SCOP, CATH
Designed protein ; SOLUTION NMR
e7bqfA1[A:224-282] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Protein salvador homolog 1 ; ligands: DIO ; X-RAY DIFFRACTION 1.7Å
e1i8gB1[B:1-34] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
PEPTIDYL-PROLYL CIS-TRANS ISOMERASE NIMA-INTERACTING 1 ; SOLUTION NMR
e1i6cA1[A:1-34] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
PEPTIDYL-PROLYL CIS-TRANS ISOMERASE NIMA-INTERACTING 1 ; SOLUTION NMR
e1eg4A1[A:47-84] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DYSTROPHIN ; X-RAY DIFFRACTION 2.0Å
e1k9qA1[A:11-43] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
65 kDa Yes-associated protein ; SOLUTION NMR
e1k5rA1[A:11-43] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
65 KDA YES-ASSOCIATED PROTEIN ; SOLUTION NMR
e1k9rA1[A:11-43] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
65 kDa Yes-associated protein ; SOLUTION NMR
e1o6wA2[A:2-29] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
PRE-MRNA PROCESSING PROTEIN PRP40 ; SOLUTION NMR
e1zr7A1[A:12-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
huntingtin-interacting protein HYPA/FBP11 ; SOLUTION NMR
e2dyfA1[A:12-37] Image Pymol Jmol Links: PDB, SCOP, CATH
Huntingtin-interacting protein HYPA/FBP11 ; SOLUTION NMR
e1ywjA1[A:15-42] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Formin-binding protein 3 ; SOLUTION NMR
e2idhG1[G:254-284] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Amyloid beta A4 protein-binding family B member 1 ; ligands: PG4 ; X-RAY DIFFRACTION 2.19Å
e2idhF1[F:254-283] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Amyloid beta A4 protein-binding family B member 1 ; ligands: PG4 ; X-RAY DIFFRACTION 2.19Å
e2oeiA1[A:253-285] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Amyloid beta A4 protein-binding family B member 1 ; X-RAY DIFFRACTION 1.270Å
e2idhD1[D:253-285] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Amyloid beta A4 protein-binding family B member 1 ; ligands: PG4,SO4 ; X-RAY DIFFRACTION 2.19Å
e2idhA1[A:254-283] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Amyloid beta A4 protein-binding family B member 1 ; ligands: PG4,SO4 ; X-RAY DIFFRACTION 2.19Å
e2idhH1[H:253-284] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Amyloid beta A4 protein-binding family B member 1 ; ligands: PG4 ; X-RAY DIFFRACTION 2.19Å
e2idhB1[B:254-284] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Amyloid beta A4 protein-binding family B member 1 ; ligands: PG4 ; X-RAY DIFFRACTION 2.19Å
e2idhC1[C:254-283] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Amyloid beta A4 protein-binding family B member 1 ; ligands: PG4,SO4 ; X-RAY DIFFRACTION 2.19Å
e2idhE1[E:254-283] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Amyloid beta A4 protein-binding family B member 1 ; ligands: PG4 ; X-RAY DIFFRACTION 2.19Å
e2lb2A1[A:366-400] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
E3 UBIQUITIN-PROTEIN LIGASE NEDD4-LIKE ; SOLUTION NMR
e2kbuA1[A:1-31] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 ; SOLUTION NMR
e2kykA1[A:1-39] Image Pymol Jmol Links: PDB, SCOP, CATH
E3 UBIQUITIN-PROTEIN LIGASE ITCHY HOMOLOG ; SOLUTION NMR
e2lb0A1[A:235-267] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
E3 UBIQUITIN-PROTEIN LIGASE SMURF1 ; SOLUTION NMR
e2lajA1[A:476-515] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
E3 UBIQUITIN-PROTEIN LIGASE NEDD4-LIKE ; SOLUTION NMR
e3olmA2[A:385-422] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
E3 UBIQUITIN-PROTEIN LIGASE RSP5 ; X-RAY DIFFRACTION 2.5Å
e2kpzA1[A:12-45] Image Pymol Jmol Links: PDB, SCOP, CATH
E3 ubiquitin-protein ligase NEDD4 ; SOLUTION NMR
e2laxA1[A:170-205] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
YORKIE HOMOLOG ; SOLUTION NMR
e2lawA1[A:230-263] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
YORKIE HOMOLOG ; SOLUTION NMR
e2lb1A1[A:279-313] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
E3 ubiquitin-protein ligase SMURF1 ; SOLUTION NMR
e1yiuA1[A:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Itchy E3 ubiquitin protein ligase ; SOLUTION NMR
e1wr3A1[A:1-36] Image Pymol Jmol Links: PDB, SCOP, CATH
ubiquitin-protein ligase Nedd4-2 ; SOLUTION NMR
e2yshA1[A:1-40] Image Pymol Jmol Links: PDB, SCOP, CATH
Growth-arrest-specific protein 7 ; SOLUTION NMR
e1wr7A1[A:1-41] Image Pymol Jmol Links: PDB, SCOP, CATH
Nedd4-2 ; SOLUTION NMR
e2djyA1[A:292-333] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Smad ubiquitination regulatory factor 2 ; SOLUTION NMR
e2op7A1[A:1-39] Image Pymol Jmol Links: PDB, SCOP, CATH
NEDD4-like E3 ubiquitin-protein ligase WWP1 ; SOLUTION NMR
e2nntA1[A:200-230] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Transcription elongation regulator 1 ; SOLID-STATE NMR
e2ysiA1[A:1-40] Image Pymol Jmol Links: PDB, SCOP, CATH
Transcription elongation regulator 1 ; SOLUTION NMR
e2jxwA2[A:1-32] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
WW domain-binding protein 4 ; SOLUTION NMR
e2ysfA1[A:1-40] Image Pymol Jmol Links: PDB, SCOP, CATH
E3 ubiquitin-protein ligase Itchy homolog ; SOLUTION NMR
e2kcfA1[A:1-36] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed,
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 ; SOLUTION NMR
e2jo9A1[A:5-35] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Itchy E3 ubiquitin protein ligase ; SOLUTION NMR
e2jocA1[A:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Itchy E3 ubiquitin protein ligase ; SOLUTION NMR
e2zqsA1[A:6-39] Image Pymol Jmol Links: PDB, SCOP, CATH
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 ; ligands: 1PG ; X-RAY DIFFRACTION 1.902Å
e2zqtA1[A:6-39] Image Pymol Jmol Links: PDB, SCOP, CATH
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 ; ligands: 1PG ; X-RAY DIFFRACTION 1.46Å
e2zquA1[A:6-39] Image Pymol Jmol Links: PDB, SCOP, CATH
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 ; X-RAY DIFFRACTION 2.5Å
e2zqvA1[A:6-39] Image Pymol Jmol Links: PDB, SCOP, CATH
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 ; X-RAY DIFFRACTION 2.498Å
e2zr4A1[A:6-39] Image Pymol Jmol Links: PDB, SCOP, CATH
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 ; ligands: 1PG ; X-RAY DIFFRACTION 1.8Å
e2zr5A1[A:6-39] Image Pymol Jmol Links: PDB, SCOP, CATH
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 ; ligands: 1PG ; X-RAY DIFFRACTION 2.6Å
e3kabA2[A:7-28] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 ; ligands: 12P ; X-RAY DIFFRACTION 2.19Å
e3kadA2[A:7-28] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 ; ligands: 12P ; X-RAY DIFFRACTION 1.90Å
e3kafA2[A:7-28] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 ; X-RAY DIFFRACTION 2.30Å
e3kagA2[A:7-28] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 ; ligands: 12P ; X-RAY DIFFRACTION 1.90Å
e3kahA2[A:7-28] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 ; ligands: 12P ; X-RAY DIFFRACTION 2.30Å
e3kaiA2[A:7-28] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 ; ligands: 12P ; X-RAY DIFFRACTION 1.90Å
e3kceA2[A:6-28] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 ; ligands: 12P ; X-RAY DIFFRACTION 1.90Å
e3odkA2[A:7-28] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 ; ligands: PE4 ; X-RAY DIFFRACTION 2.30Å
e2lb3A1[A:10-45] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
PEPTIDYL-PROLYL CIS-TRANS ISOMERASE NIMA-INTERACTING 1 ; SOLUTION NMR
e2lazA1[A:235-267] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
E3 UBIQUITIN-PROTEIN LIGASE SMURF1 ; SOLUTION NMR
e2kq0A1[A:12-46] Image Pymol Jmol Links: PDB, SCOP, CATH
E3 ubiquitin-protein ligase NEDD4 ; SOLUTION NMR
e2xp4A2[A:7-28] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
PEPTIDYL-PROLYL CIS-TRANS ISOMERASE NIMA-INTERACTING 1 ; ligands: 12P ; X-RAY DIFFRACTION 1.80Å
e2xp5A2[A:7-28] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
PEPTIDYL-PROLYL CIS-TRANS ISOMERASE NIMA-INTERACTING 1 ; ligands: 12P ; X-RAY DIFFRACTION 1.90Å
e2xp6A2[A:7-28] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
PEPTIDYL-PROLYL CIS-TRANS ISOMERASE NIMA-INTERACTING 1 ; ligands: 12P ; X-RAY DIFFRACTION 1.90Å
e2xp7A2[A:7-28] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
PEPTIDYL-PROLYL CIS-TRANS ISOMERASE NIMA-INTERACTING 1 ; ligands: 12P ; X-RAY DIFFRACTION 2.00Å
e2xp8A2[A:7-28] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
PEPTIDYL-PROLYL CIS-TRANS ISOMERASE NIMA-INTERACTING 1 ; ligands: 12P ; X-RAY DIFFRACTION 2.10Å
e2xp9A2[A:7-28] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
PEPTIDYL-PROLYL CIS-TRANS ISOMERASE NIMA-INTERACTING 1 ; ligands: 12P ; X-RAY DIFFRACTION 1.90Å
e2xpaA2[A:7-28] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
PEPTIDYL-PROLYL CIS-TRANS ISOMERASE NIMA-INTERACTING 1 ; ligands: 12P ; X-RAY DIFFRACTION 1.90Å
e2xpbA2[A:7-28] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
PEPTIDYL-PROLYL CIS-TRANS ISOMERASE NIMA-INTERACTING 1 ; ligands: 12P ; X-RAY DIFFRACTION 2.00Å
e3oobA2[A:6-28] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 ; ligands: KDH,PE4 ; X-RAY DIFFRACTION 1.900Å
e2layA1[A:170-205] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
YORKIE HOMOLOG ; SOLUTION NMR
e2l4jA1[A:177-222] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Yes-associated protein 2 (YAP2) ; SOLUTION NMR
e2ltvA1[A:230-265] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
YORKIE HOMOLOG ; SOLUTION NMR
e2ltwA1[A:170-205] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
YORKIE HOMOLOG ; SOLUTION NMR
e2ltxA1[A:280-314] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
E3 UBIQUITIN-PROTEIN LIGASE SMURF1 ; SOLUTION NMR
e2ltzA1[A:297-333] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
E3 UBIQUITIN-PROTEIN LIGASE SMURF2 ; SOLUTION NMR
e1ymzA1[A:1-38] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
CC45 ; SOLUTION NMR
e2dmvA1[A:1-43] Image Pymol Jmol Links: PDB, SCOP, CATH
Itchy homolog E3 ubiquitin protein ligase ; SOLUTION NMR
e2ez5W1[W:521-566] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
E3 ubiquitin-protein ligase NEDD4 ; SOLUTION NMR
e1wmvA1[A:1-54] Image Pymol Jmol Links: PDB, SCOP, CATH
WW domain containing oxidoreductase ; SOLUTION NMR
e2ysdA1[A:1-57] Image Pymol Jmol Links: PDB, SCOP, CATH
Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1 ; SOLUTION NMR
e2jx8A1[A:1-47] Image Pymol Jmol Links: PDB, SCOP, CATH
Phosphorylated CTD-interacting factor 1 ; SOLUTION NMR
e2yseA1[A:1-60] Image Pymol Jmol Links: PDB, SCOP, CATH
Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1 ; SOLUTION NMR
e2ysbA1[A:1-49] Image Pymol Jmol Links: PDB, SCOP, CATH
Salvador homolog 1 protein ; SOLUTION NMR
e4e5rA1[A:300-355] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
MGC78846 protein ; X-RAY DIFFRACTION 1.9Å
e1e0mA1[A:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
WWPROTOTYPE ; SOLUTION NMR
e3ntpA2[A:6-28] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 ; ligands: PE8 ; X-RAY DIFFRACTION 1.76Å
e2jxwA1[A:33-75] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
WW domain-binding protein 4 ; SOLUTION NMR
e2dk7A1[A:1-73] Image Pymol Jmol Links: PDB, SCOP, CATH
Transcription elongation regulator 1 ; SOLUTION NMR
e2jv4A1[A:1-53] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Peptidyl-prolyl cis/trans isomerase ; SOLUTION NMR
e2zajA1[A:1-49] Image Pymol Jmol Links: PDB, SCOP, CATH
Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1 ; SOLUTION NMR
e2dwvA1[A:1-49] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Salvador homolog 1 protein ; SOLUTION NMR
e2rm0W1[W:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Transcription elongation regulator 1 ; SOLUTION NMR
e2yscA1[A:1-39] Image Pymol Jmol Links: PDB, SCOP, CATH
Amyloid beta A4 precursor protein-binding family B member 3 ; SOLUTION NMR
e2e45A1[A:1-50] Image Pymol Jmol Links: PDB, SCOP, CATH
Amyloid beta A4 precursor protein-binding family B member 1 ; SOLUTION NMR
e1i5hW1[W:450-499] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
UBIQUITIN LIGASE NEDD4 ; SOLUTION NMR
e1jmqA1[A:5-50] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
65 KDA YES-ASSOCIATED PROTEIN ; SOLUTION NMR
e1e0lA1[A:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
FORMIN BINDING PROTEIN ; SOLUTION NMR
e2jupW1[W:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Transcription elongation regulator 1 ; SOLUTION NMR
e2rlyW1[W:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Transcription elongation regulator 1 ; SOLUTION NMR
e2m9eA1[A:1-33] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
PEPTIDYL-PROLYL CIS-TRANS ISOMERASE NIMA-INTERACTING 1 ; SOLUTION NMR
e2m9fA1[A:1-33] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
PEPTIDYL-PROLYL CIS-TRANS ISOMERASE NIMA-INTERACTING 1 ; ligands: NAG ; SOLUTION NMR
e2m9iA1[A:1-34] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
PEPTIDYL-PROLYL CIS-TRANS ISOMERASE NIMA-INTERACTING 1 ; SOLUTION NMR
e2m9jA1[A:1-34] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
PEPTIDYL-PROLYL CIS-TRANS ISOMERASE NIMA-INTERACTING 1 ; ligands: NAG ; SOLUTION NMR
e2m3oW1[W:416-458] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
E3 UBIQUITIN-PROTEIN LIGASE NEDD4 ; SOLUTION NMR
e4gwtA1[A:6-38] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 ; ligands: LMR ; X-RAY DIFFRACTION 2.250Å
e4gwvA1[A:6-38] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 ; ligands: FLC ; X-RAY DIFFRACTION 3.050Å
e2dwvB1[B:1-49] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Salvador homolog 1 protein ; SOLUTION NMR
e4n7fA1[A:1-454] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
E3 ubiquitin-protein ligase NEDD4 ; X-RAY DIFFRACTION 1.1Å
e4n7fB1[B:1-454] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
E3 ubiquitin-protein ligase NEDD4 ; X-RAY DIFFRACTION 1.1Å
e4n7hA1[A:421-453] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
E3 ubiquitin-protein ligase NEDD4 ; ligands: GAI ; X-RAY DIFFRACTION 1.700Å
e1i8hB2[B:1-39] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
PEPTIDYL-PROLYL CIS-TRANS ISOMERASE NIMA-INTERACTING 1 ; SOLUTION NMR
e1nmvA4[A:1-39] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 ; SOLUTION NMR
e1tk7A4[A:1-42] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
CG4244-PB ; SOLUTION NMR
e1tk7A1[A:43-88] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
CG4244-PB ; SOLUTION NMR
e2f21A4[A:1-39] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 ; ligands: 1PE ; X-RAY DIFFRACTION 1.5Å
e1f8aB4[B:1-43] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
PEPTIDYL-PROLYL CIS-TRANS ISOMERASE NIMA-INTERACTING 1 ; X-RAY DIFFRACTION 1.84Å
e1yw5A4[A:1-62] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
peptidyl prolyl cis/trans isomerase ; X-RAY DIFFRACTION 1.6Å
e2m8iA1[A:1-43] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
PEPTIDYL-PROLYL CIS-TRANS ISOMERASE NIMA-INTERACTING 1 ; SOLUTION NMR
e2m8jA1[A:1-43] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
PEPTIDYL-PROLYL CIS-TRANS ISOMERASE NIMA-INTERACTING 1 ; SOLUTION NMR
e2ltyA1[A:365-398] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
E3 UBIQUITIN-PROTEIN LIGASE NEDD4-LIKE ; SOLUTION NMR
e1wr4A1[A:1-36] Image Pymol Jmol Links: PDB, SCOP, CATH
ubiquitin-protein ligase Nedd4-2 ; SOLUTION NMR
e2ysgA1[A:1-40] Image Pymol Jmol Links: PDB, SCOP, CATH
Syntaxin-binding protein 4 ; SOLUTION NMR
e2nntB1[B:300-330] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Transcription elongation regulator 1 ; SOLID-STATE NMR
e2nntC1[C:400-430] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Transcription elongation regulator 1 ; SOLID-STATE NMR
e2nntD1[D:500-530] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Transcription elongation regulator 1 ; SOLID-STATE NMR
e3tdbA3[A:6-28] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 ; ligands: PE4 ; X-RAY DIFFRACTION 2.26Å
e3tczA3[A:6-28] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 ; ligands: PE4 ; X-RAY DIFFRACTION 2.1Å
e2itkA3[A:7-28] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
PEPTIDYL-PROLYL CIS-TRANS ISOMERASE NIMA-INTERACTING 1 ; ligands: PE4 ; X-RAY DIFFRACTION 1.45Å
e2q5aA3[A:7-28] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
PEPTIDYL-PROLYL CIS-TRANS ISOMERASE NIMA-INTERACTING 1 ; ligands: 16P ; X-RAY DIFFRACTION 1.5Å
e2xp3A3[A:7-28] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
PEPTIDYL-PROLYL CIS-TRANS ISOMERASE NIMA-INTERACTING 1 ; ligands: 12P ; X-RAY DIFFRACTION 2.00Å
e3tc5A2[A:7-28] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 ; ligands: P6G ; X-RAY DIFFRACTION 1.4Å
e4lcdA1[A:383-422] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
E3 ubiquitin-protein ligase RSP5 ; X-RAY DIFFRACTION 3.100Å
e4lcdB1[B:384-422] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
E3 ubiquitin-protein ligase RSP5 ; X-RAY DIFFRACTION 3.100Å
e2mdiA1[A:1-56] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Histone-lysine N-methyltransferase SETD2 ; SOLUTION NMR
e2mdjA1[A:1-56] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Histone-lysine N-methyltransferase SETD2 ; SOLUTION NMR
e2mdcA1[A:9-56] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Histone-lysine N-methyltransferase SETD2 ; SOLUTION NMR
e2mptA1[A:478-509] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
E3 ubiquitin-protein ligase NEDD4-like ; SOLUTION NMR
e3wh0A2[A:7-28] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 ; ligands: O4B ; X-RAY DIFFRACTION 1.6Å
e2mw9A1[A:432-464] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Transcription elongation regulator 1 ; SOLUTION NMR
e2mwaA1[A:431-464] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Transcription elongation regulator 1 ; SOLUTION NMR
e2mwbA1[A:431-464] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Transcription elongation regulator 1 ; SOLUTION NMR
e2mwdA1[A:433-460] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Transcription elongation regulator 1 ; SOLUTION NMR
e2mweA1[A:433-460] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Transcription elongation regulator 1 ; SOLUTION NMR
e2mwfA1[A:433-464] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Transcription elongation regulator 1 ; SOLUTION NMR
e4rofA1[A:437-472] Image Pymol Jmol Links: PDB, SCOP, CATH
E3 ubiquitin-protein ligase Itchy homolog ; X-RAY DIFFRACTION 2.030Å
e4rofB1[B:437-472] Image Pymol Jmol Links: PDB, SCOP, CATH
E3 ubiquitin-protein ligase Itchy homolog ; X-RAY DIFFRACTION 2.030Å
e4roiA1[A:478-514] Image Pymol Jmol Links: PDB, SCOP, CATH
; ligands: UNX
e4roiB1[B:476-514] Image Pymol Jmol Links: PDB, SCOP, CATH
; ligands: UNX
e4rohA2[A:438-469] Image Pymol Jmol Links: PDB, SCOP, CATH
; ligands: UNX
e4rohA1[A:470-517] Image Pymol Jmol Links: PDB, SCOP, CATH
; ligands: UNX
e4rreA1[A:437-472] Image Pymol Jmol Links: PDB, SCOP, CATH
; ligands: UNX
e4rreC1[C:435-474] Image Pymol Jmol Links: PDB, SCOP, CATH
; ligands: UNX
e4rreE1[E:437-473] Image Pymol Jmol Links: PDB, SCOP, CATH
; ligands: UNX
e4rreG1[G:437-473] Image Pymol Jmol Links: PDB, SCOP, CATH
; ligands: UNX
e4qibA1[A:7-28] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 ; ligands: PE4 ; X-RAY DIFFRACTION 1.86Å
e4u84A1[A:7-28] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 ; ligands: 15P ; X-RAY DIFFRACTION 1.78Å
e4u85A2[A:7-28] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 ; X-RAY DIFFRACTION 1.7Å
e4u86A2[A:6-28] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 ; ligands: 1PG ; X-RAY DIFFRACTION 1.6Å
e4rexA1[A:161-208] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Yorkie homolog ; ligands: SO4 ; X-RAY DIFFRACTION 1.600Å
e5cq2A1[A:438-471] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
E3 ubiquitin-protein ligase Itchy homolog ; ligands: UNX ; X-RAY DIFFRACTION 1.400Å
e5cq2A2[A:470-517] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
E3 ubiquitin-protein ligase Itchy homolog ; ligands: UNX ; X-RAY DIFFRACTION 1.400Å
e5dzdA1[A:478-514] Image Pymol Jmol Links: PDB, SCOP, CATH
E3 ubiquitin-protein ligase Itchy homolog ; ligands: UNX ; X-RAY DIFFRACTION 1.570Å
e5dwsA1[A:437-473] Image Pymol Jmol Links: PDB, SCOP, CATH
E3 ubiquitin-protein ligase Itchy homolog ; ligands: UNX ; X-RAY DIFFRACTION 1.650Å
e5dwsC1[C:435-474] Image Pymol Jmol Links: PDB, SCOP, CATH
E3 ubiquitin-protein ligase Itchy homolog ; ligands: UNX ; X-RAY DIFFRACTION 1.650Å
e5dwsE1[E:438-472] Image Pymol Jmol Links: PDB, SCOP, CATH
E3 ubiquitin-protein ligase Itchy homolog ; ligands: UNX ; X-RAY DIFFRACTION 1.650Å
e5dwsG1[G:437-473] Image Pymol Jmol Links: PDB, SCOP, CATH
E3 ubiquitin-protein ligase Itchy homolog ; ligands: UNX ; X-RAY DIFFRACTION 1.650Å
e2n4rA1[A:428-464] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Transcription elongation regulator 1 ; SOLUTION NMR
e2n4sA1[A:428-464] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Transcription elongation regulator 1 ; SOLUTION NMR
e2n4tA1[A:428-464] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Transcription elongation regulator 1 ; SOLUTION NMR
e2n4uA1[A:428-464] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Transcription elongation regulator 1 ; SOLUTION NMR
e2n4vA1[A:428-464] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Transcription elongation regulator 1 ; SOLUTION NMR
e2n4wA1[A:428-464] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Transcription elongation regulator 1 ; SOLUTION NMR
e5dzdB1[B:476-514] Image Pymol Jmol Links: PDB, SCOP, CATH
E3 ubiquitin-protein ligase Itchy homolog ; ligands: UNX ; X-RAY DIFFRACTION 1.570Å
e2n1oA1[A:7-39] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 ; SOLUTION NMR
e5ahtA1[A:1-43] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
E3 UBIQUITIN-PROTEIN LIGASE NEDD4 ; SOLUTION NMR
e2zr6A1[A:6-39] Image Pymol Jmol Links: PDB, SCOP, CATH
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 ; ligands: 1PG ; X-RAY DIFFRACTION 3.2Å
e1zcnA2[A:7-39] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 ; ligands: 1PE ; X-RAY DIFFRACTION 1.9Å
e2nc3A1[A:1-33] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Pin1 WW Domain ; ligands: ALL ; SOLUTION NMR
e2nc4A1[A:1-33] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Pin1 WW Domain ; ligands: GAL ; SOLUTION NMR
e2nc5A1[A:1-33] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Pin1 WW Domain ; ligands: XYP ; SOLUTION NMR
e2nc6A1[A:1-33] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Pin1 WW Domain ; ligands: 4N2 ; SOLUTION NMR
e5b3zA3[A:1-36] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1,Maltose-binding periplasmic protein ; X-RAY DIFFRACTION 2.3Å
e5b3zB3[B:3-36] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1,Maltose-binding periplasmic protein ; X-RAY DIFFRACTION 2.3Å
e5b3zC3[C:2-36] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1,Maltose-binding periplasmic protein ; X-RAY DIFFRACTION 2.3Å
e5b3zD3[D:3-36] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1,Maltose-binding periplasmic protein ; X-RAY DIFFRACTION 2.3Å
e5uy9A2[A:6-28] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 ; ligands: PE4 ; X-RAY DIFFRACTION 1.85Å
e5tj7A2[A:335-363,A:394-395] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
NEDD4-like E3 ubiquitin-protein ligase WWP2 ; X-RAY DIFFRACTION 2.600Å
e5ydyA1[A:8-61] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
WW2 domain and PPxY motif complex ; SOLUTION NMR
e5ydxA1[A:7-65] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
WW domain with PPxY motif ; SOLUTION NMR
e5vtiA1[A:6-36] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 ; ligands: CL ; X-RAY DIFFRACTION 1.80Å
e5vtjA1[A:6-38] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 ; ligands: SO4 ; X-RAY DIFFRACTION 1.50Å
e5vtkA1[A:6-38] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 ; ligands: CL ; X-RAY DIFFRACTION 1.99Å
e6j69A2[A:4-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Protein KIBRA ; X-RAY DIFFRACTION 2.753Å
e6j69A1[A:42-85] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Protein KIBRA ; X-RAY DIFFRACTION 2.753Å
e6j1yB2[B:492-532] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
NEDD4-like E3 ubiquitin-protein ligase WWP1 ; X-RAY DIFFRACTION 2.50Å
e6j1yB3[B:417-491] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
NEDD4-like E3 ubiquitin-protein ligase WWP1 ; X-RAY DIFFRACTION 2.50Å
Nexte3l4hA2[A:1015-1056] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH
E3 UBIQUITIN-PROTEIN LIGASE HECW1 ; ligands: ACY ; X-RAY DIFFRACTION 1.8Å
e1eg3A1[A:47-84] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DYSTROPHIN ; X-RAY DIFFRACTION 2.0Å
e1o6wA1[A:30-75] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
PRE-MRNA PROCESSING PROTEIN PRP40 ; SOLUTION NMR
e1ywiA1[A:15-42] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Formin-binding protein 3 ; SOLUTION NMR
e2dk1A1[A:7-44] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH
WW domain-binding protein 4 ; SOLUTION NMR
e2jmfA1[A:521-553] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
E3 ubiquitin-protein ligase suppressor of deltex ; SOLUTION NMR
Pseudo group of domains that do not map to PFam family profiles. Domains inside should not be considered as in one family.
beta sandwichestwo beta-sheets stacked together to form a sandwich
beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain
beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander
a+b two layersone alpha-helix layer and one beta-sheet layer
a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers
a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers
a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers
a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain
a/b barrelsrepeating beta-alpha units form a barrel
a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers
mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions
few secondary structure elementsstabilized by cofactors or disulfides
extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes