Evolutionary classification of protein domain structures

alpha arraysalpha-helix arrays with mainly perpendicular helices

alpha bundlesalpha-helix bundles with mainly parallel helices

alpha superhelicesrepeating alpha-helix hairpins form a superhelix

alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain

alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix

beta barrelssingle beta-sheet folded upon itself to form a barrel

beta meanderssingle beta-sheet with mainly meander topology

beta sandwichestwo beta-sheets stacked together to form a sandwich

beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain

beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander

a+b two layersone alpha-helix layer and one beta-sheet layer

X: Tautomerase/MIF-like

X: Uncharacterized protein BTH I2711

X: Peptidase inhibitors family I69

X: Asparaginal-tRNA synthetase N-terminal domain

X: Flagellar hook protein FlgE D0 domain

X: Curli production assembly/transport component CsgF

X: Anti-LPS factor/recA domain

X: Obg GTP-binding protein C-terminal domain-like

X: Ribosomal protein L9 C-domain

X: Urease, gamma-subunit

X: C-terminal domain of nonstructural protein nsp4

X: Putative heterocyst differentiation inhibitor NpR1517

X: Head-to-tail joining protein W, gpW

X: XkdW-like

X: Hypothetical protein MTH677

X: GTF2I-like repeat

X: Ribosomal protein L35p

X: Archaea-specific ribosomal protein L46a

X: PB2 C-terminal domain-like

X: Peptidoglycan deacetylase N-terminal noncatalytic region

X: ERH-like

X: ssDNA binding protein VirE2

X: N-terminal a+b domain in urocanase (Pfam 01175)

X: CbiD-like (Pfam 01888) N-terminal domain

X: Prion-like

X: gp120 inner domain

X: Ribosomal protein L31e-like

X: SSHS domain

X: MTH1598-like

X: Reverse ferredoxin

X: Tetrapyrrole methylase C-terminal domain-like

X: ImmE5-like

X: Polycystin-mucolipin domain

X: UvrB-binding domain of UvrA

X: FAM3 superfamily

X: a+b domain in Ribosomal protein L1

X: Photosystem I subunit PsaD

X: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase

X: uncharacterized protein YP_926445.1

X: Insertion domain in phosphocholine transferase AnkX

X: HPr-like

X: EcoKMcrA modification binding domain

X: Allophycocyanin linker chain (domain)

X: Small outer capsid protein (Soc)

X: GYF/BRK domain-like

X: Pesticin N-terminal domain

X: Uncharacterized protein Q2S0R5

X: Tombusvirus P19 core protein, VP19

X: YjbQ-like (Pfam 01894)

X: SSo0622-like (Pfam 02676)

X: MTHFR SAM-binding regulatory domain

X: barrel domain in D-aminoacid aminotransferase-like PLP-dependent enzymes

X: Uncharacterized protein yibL

X: L9 N-domain-like

X: NosL/MerB-like

X: DUF2233 N-terminal domain

X: DNA helicase UvsW N-terminal a+b domain-related

X: EKC/KEOPS complex subunit GON7

X: Putative acetamidase tm0119 C-terminal domain

X: Csm1 ferredoxin-like domain

X: Uncharacterized protein VC_0899

X: ferredoxin-like domain in VP1

X: Seb1 domain 2

X: protein PCC1

X: HLTF protein HIRAN domain

X: Cof C2 cap domain

X: N-terminal domain of vibrio phospholipase

X: Alpha-beta plaits

X: DNA Mimic Protein Arn

X: Ribosomal protein L22e

X: 60S ribosomal export protein NMD3 a+b domain

X: uncharacterized protein lpg1496 N-terminal domain

X: ferredoxin-like domain in flagellar biosynthesis protein flhA

X: Uncharacterized protein VC_A0919

X: PHP14-like

X: N-terminal domain of chitin biosynthesis protein CHS6

X: ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit

X: permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit

X: Translation initiation factor eIF4e and phosphothreonine lyase

X: uncharacterized protein SAMEA2273162_06031

X: Ribosomal protein L30p/L7e

X: Insertion domain in 60S ribosomal protein rpP0 (L10P)

X: a+b domain in PB2

X: tRNA pseudouridine synthase TruD insertion domain

X: Barrel domain in dedicator of cytokinesis protein 9

X: YcgL/NE1680-like

X: L,D-transpeptidase C-terminal domain

X: Oxalate Biosynthetic Component A (ObcA) insertion domains

X: GP2-like

X: SdbC C-terminal domain

X: Formate dehydrogenase/DMSO reductase, domain 1

X: 4Fe-4S ferredoxin

X: Diedel

X: Uncharacterized protein MXAN_0049

X: LuxS, MPP, ThrRS/AlaRS common domain

looks like an elaborated ferredoxin

X: Glutamine synthetase-like

X: Cytoplasmic domain of BfpC

X: Ribosomal protein L5

X: hypothetical protein TA0743

X: DCoH-like

X: Prokaryotic AspRS, insert domain

X: Thymidylate synthase-complementing protein Thy1

X: Chorismate synthase, AroC

X: a+b domain in type II DNA topoisomerase

X: TRCF domain

X: Homing endonucleases-like

X: Endonuclease PI-TkoII domain IV

X: C-terminal domain in some PLP-dependent transferases

X: BtrG-like (Pfam 03674)

X: Glucose permease domain IIB-like

X: Putative oxidoreductase

X: Hedgehog/DD-peptidase

X: RRF/tRNA synthetase additional domain-like

X: AFV1-102

X: N-terminal subdomain in UbiD middle domain

X: Dodecin subunit-like

X: Tp47 lipoprotein N-terminal domain

X: DLC

X: Factor H binding protein B (FhbB)

X: ClpS-like

contains a HTH motif

X: R3H domain-like

X: hydrogenase expression protein-like

X: Chromosome partition protein mukE N-terminal domain

X: Ribosomal protein S8, C-terminal domain

X: IF3-like

X: BLIP-like

X: yfeY-like

X: Ribosomal protein S16

X: Ribosomal protein S19

X: RPB5-like RNA polymerase subunit

X: Subtilisin inhibitor

X: Putative lipoprotein CPF_1278-related

X: The spindle assembly checkpoint protein mad2

X: C-terminal functional domain of REDD1

X: MesJ substrate recognition domain-like

X: AMMECR1-like

X: THUMP domain-like

X: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase

X: C-terminal domain in a functionally unknown conserved protein

X: Spliceosomal helicase Aquarius insert domain

X: Integrin beta tail domain

X: NSFL1 (p97 ATPase) cofactor p47, SEP domain

X: Hypothetical protein Yml108w

X: a+b domain in YebC-like proteins

X: Nqo5-like

X: Baseplate structural protein gp6 C-terminal domain III

X: T-fold

X: Ribonuclease PH domain 2-like

X: Rrs1

X: MotY N-terminal domain

X: ssDNA-binding transcriptional regulator domain-like

X: N-terminal domain of effector protein PipB2

X: Bacterial protein-export protein SecB

H: Bacterial protein-export protein SecB

T: Bacterial protein-export protein SecB

F: DUF1149

PF06619

F: SecB

PF02556

Representatives:

e1qynA1[A:9-142] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Protein-export protein secB ; X-RAY DIFFRACTION 2.35Å

e5mtwB1[B:6-163] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

SecB-like chaperone Rv1957 ; ligands: CA,DMS ; X-RAY DIFFRACTION 1.835Å

e5mtwC2[C:13-166] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

SecB-like chaperone Rv1957 ; ligands: DMS ; X-RAY DIFFRACTION 1.835Å

e5mtwD2[D:10-162] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

SecB-like chaperone Rv1957 ; ligands: CA ; X-RAY DIFFRACTION 1.835Å

e5mtwA2[A:9-163] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

SecB-like chaperone Rv1957 ; ligands: CA ; X-RAY DIFFRACTION 1.835Å

e1fx3D1[D:17-151] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

PROTEIN-EXPORT PROTEIN SECB ; X-RAY DIFFRACTION 2.5Å

e1ozbG1[G:16-151] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Protein-export protein secB ; X-RAY DIFFRACTION 2.8Å

e1ozbD1[D:17-151] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Protein-export protein secB ; X-RAY DIFFRACTION 2.8Å

e1ozbB1[B:16-151] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Protein-export protein secB ; X-RAY DIFFRACTION 2.8Å

e1qynD1[D:9-142] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Protein-export protein secB ; X-RAY DIFFRACTION 2.35Å

e1qynC1[C:9-140] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Protein-export protein secB ; X-RAY DIFFRACTION 2.35Å

e1fx3A1[A:16-151] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

PROTEIN-EXPORT PROTEIN SECB ; X-RAY DIFFRACTION 2.5Å

e1ozbF1[F:16-151] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Protein-export protein secB ; X-RAY DIFFRACTION 2.8Å

e1ozbE1[E:16-151] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Protein-export protein secB ; X-RAY DIFFRACTION 2.8Å

e1fx3C1[C:16-151] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

PROTEIN-EXPORT PROTEIN SECB ; X-RAY DIFFRACTION 2.5Å

e1ozbC1[C:16-151] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Protein-export protein secB ; X-RAY DIFFRACTION 2.8Å

e1ozbH1[H:16-151] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Protein-export protein secB ; X-RAY DIFFRACTION 2.8Å

e1fx3B1[B:16-151] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

PROTEIN-EXPORT PROTEIN SECB ; X-RAY DIFFRACTION 2.5Å

e1qynB1[B:9-141] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Protein-export protein secB ; X-RAY DIFFRACTION 2.35Å

e1ozbA1[A:16-151] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Protein-export protein secB ; X-RAY DIFFRACTION 2.8Å

e5jtlA1[A:1-155] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI