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X - Possible homology level

H - Homology level

T - Topology level

F - Family level

* - Provisional representative


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Evolutionary classification of protein domain structures

alpha arraysalpha-helix arrays with mainly perpendicular helices

alpha bundlesalpha-helix bundles with mainly parallel helices

alpha superhelicesrepeating alpha-helix hairpins form a superhelix

alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain

alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix

beta barrelssingle beta-sheet folded upon itself to form a barrel

beta meanderssingle beta-sheet with mainly meander topology

beta sandwichestwo beta-sheets stacked together to form a sandwich

beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain

beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander

a+b two layersone alpha-helix layer and one beta-sheet layer

a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers

a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers

a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers

a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain

X: MinE-like

both are dimers, but slightly different dimerization mode

X: a+b domain in cullin-like proteins
H: a+b domain in cullin-like proteins
T: a+b domain in cullin-like proteins
F: Cullin

PF00888 CL0020

Representatives:

e1ldjA5[A:506-603] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

CULLIN HOMOLOG 1 ; X-RAY DIFFRACTION 3.0Å

e2hyeC5[C:493-591] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Cullin-4A ; X-RAY DIFFRACTION 3.100Å

e4ui9N3[N:564-659] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

ANAPHASE-PROMOTING COMPLEX SUBUNIT 2 ; ELECTRON MICROSCOPY

e5g04N1[N:564-659] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

ANAPHASE-PROMOTING COMPLEX SUBUNIT 2 ; ELECTRON MICROSCOPY

e5g05N1[N:564-659] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

ANAPHASE-PROMOTING COMPLEX SUBUNIT 2 ; ELECTRON MICROSCOPY

e5lcwN3[N:564-659] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Anaphase-promoting complex subunit 2 ; ELECTRON MICROSCOPY

e5a31N3[N:564-659] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

ANAPHASE-PROMOTING COMPLEX SUBUNIT 2 ; ELECTRON MICROSCOPY

e5khrN1[N:564-659] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Anaphase-promoting complex subunit 2 ; ELECTRON MICROSCOPY

e5l9uN3[N:564-659] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Anaphase-promoting complex subunit 2 ; ELECTRON MICROSCOPY

e5l9tN2[N:564-648] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Anaphase-promoting complex subunit 2 ; ELECTRON MICROSCOPY

e5khuN2[N:564-659] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Anaphase-promoting complex subunit 2 ; ELECTRON MICROSCOPY

e6tm5N2[N:564-659] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Anaphase-promoting complex subunit 2 ; ELECTRON MICROSCOPY

a/b barrelsrepeating beta-alpha units form a barrel

a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers

mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions

few secondary structure elementsstabilized by cofactors or disulfides

extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes