Home Help

X - Possible homology level

H - Homology level

T - Topology level

F - Family level

* - Provisional representative

Keyword search

Evolutionary classification of protein domain structures

alpha arraysalpha-helix arrays with mainly perpendicular helices

alpha bundlesalpha-helix bundles with mainly parallel helices

alpha superhelicesrepeating alpha-helix hairpins form a superhelix

alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain

alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix

beta barrelssingle beta-sheet folded upon itself to form a barrel

beta meanderssingle beta-sheet with mainly meander topology

beta sandwichestwo beta-sheets stacked together to form a sandwich

beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain

X: beta-propeller-like
H: beta-propeller
T: 6-bladed
F: NHL

PF01436 CL0186

Representatives:

e1rwiA1[A:11-270] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Serine/threonine-protein kinase pknD ; ligands: CD ; X-RAY DIFFRACTION 1.8Å

e1rwiB1[B:12-270] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Serine/threonine-protein kinase pknD ; ligands: CD ; X-RAY DIFFRACTION 1.8Å

e1rwlA1[A:11-268] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

SERINE/THREONINE-PROTEIN KINASE PKND ; ligands: CD ; X-RAY DIFFRACTION 1.9Å

e3ww9A1[A:1-251] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

pizza6 protein ; ligands: GOL,SO4 ; X-RAY DIFFRACTION 1.33Å

e3wwaA1[A:1-251] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pizza7H protein ; ligands: IPA ; X-RAY DIFFRACTION 1.988Å

e6f0qA1[A:1-251] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pizza6-AYW ; X-RAY DIFFRACTION 1.30Å

e6f0tA1[A:1-251] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pizza6-SFW ; ligands: GOL ; X-RAY DIFFRACTION 1.74Å

e6f0tB1[B:1-251] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pizza6-SFW ; X-RAY DIFFRACTION 1.74Å

e6f0tC1[C:1-251] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pizza6-SFW ; X-RAY DIFFRACTION 1.74Å

e6f0qB1[B:1-251] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pizza6-AYW ; X-RAY DIFFRACTION 1.30Å

e6f0sA1[A:1-251] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pizza6-SYW ; X-RAY DIFFRACTION 1.5Å

e6regA1[A:1-251] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pizza6-S ; ligands: GOL,ZN ; X-RAY DIFFRACTION 1.30Å

e6regB1[B:1-251] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pizza6-S ; ligands: ZN ; X-RAY DIFFRACTION 1.30Å

e6rehA1[A:1-251] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pizza6-S ; ligands: CU,GOL,SO4 ; X-RAY DIFFRACTION 1.73Å

e6rehB1[B:1-251] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pizza6-S ; ligands: CU,SO4 ; X-RAY DIFFRACTION 1.73Å

e6rejA1[A:2-251] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pizza6-SH ; ligands: SO4,ZN ; X-RAY DIFFRACTION 1.65Å

e6rekA1[A:1-251] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pizza6-SH ; ligands: CU,GOL ; X-RAY DIFFRACTION 1.10Å

e6renA1[A:1-251] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

3fPizza6-SH ; ligands: GOL,IPA,ZN ; X-RAY DIFFRACTION 1.30Å

e6renB1[B:4-251] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

3fPizza6-SH ; ligands: IPA,ZN ; X-RAY DIFFRACTION 1.30Å

e6i37A1[A:9-259] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

nv1Pizza6-AYW ; ligands: SO4 ; X-RAY DIFFRACTION 1.54Å

e6i38A1[A:12-262] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

nv2Pizza6-AYW ; X-RAY DIFFRACTION 1.58Å

e6i39A1[A:24-274] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

v31Pizza6-AYW ; X-RAY DIFFRACTION 1.05Å

e6i3aA1[A:33-283] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

v22Pizza6-AYW ; ligands: BR ; X-RAY DIFFRACTION 1.45Å

e6i3bA1[A:1-252] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

cPizza6-AYW ; X-RAY DIFFRACTION 1.00Å

e6i3bB1[B:1-252] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

cPizza6-AYW ; X-RAY DIFFRACTION 1.00Å

e6qseA1[A:1-251] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pizza6S ; ligands: TEW ; X-RAY DIFFRACTION 1.90Å

e6qsdA1[A:1-250] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pizza6S ; ligands: SO4 ; X-RAY DIFFRACTION 1.45Å

e6qsfA1[A:3-250] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pizza6S ; ligands: SIW ; X-RAY DIFFRACTION 1.50Å

e6qsfB1[B:1-251] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pizza6S ; ligands: SIW ; X-RAY DIFFRACTION 1.50Å

e6qsgA1[A:1-251] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pizza6S ; ligands: SIW ; X-RAY DIFFRACTION 1.15Å

e6qshA1[A:3-251] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Pizza6S ; ligands: JGH ; X-RAY DIFFRACTION 2.5Å

e6reiA1[A:1-251] Image Pymol Jmol Links: PDB, SCOP, CATH

Pizza6-S ; ligands: CD,CL,GOL ; X-RAY DIFFRACTION 1.50Å

e6reiB1[B:1-251] Image Pymol Jmol Links: PDB, SCOP, CATH

Pizza6-S ; ligands: CD,CL,GOL ; X-RAY DIFFRACTION 1.50Å

e6relA1[A:1-251] Image Pymol Jmol Links: PDB, SCOP, CATH

Pizza6-SH ; ligands: CD,CL ; X-RAY DIFFRACTION 1.08Å

e6relB1[B:1-251] Image Pymol Jmol Links: PDB, SCOP, CATH

Pizza6-SH ; ligands: CD,CL ; X-RAY DIFFRACTION 1.08Å

e6remA1[A:1-251] Image Pymol Jmol Links: PDB, SCOP, CATH

Pizza6-SH ; ligands: SO4 ; X-RAY DIFFRACTION 1.60Å

e6reoA1[A:1-251] Image Pymol Jmol Links: PDB, SCOP, CATH

3fPizza6-SH ; ligands: SO4 ; X-RAY DIFFRACTION 1.50Å

e6rlhA1[A:4-251] Image Pymol Jmol Links: PDB, SCOP, CATH

3fPizza6-SH ; X-RAY DIFFRACTION 1.50Å

e6rliA1[A:2-251] Image Pymol Jmol Links: PDB, SCOP, CATH

3fPizza6-SH ; X-RAY DIFFRACTION 1.15Å

e7ov7A1[A:1-250] Image Pymol Jmol Links: PDB, SCOP, CATHDOI

Pizza6-S ; ligands: CU,K,PW9 ; X-RAY DIFFRACTION 1.80Å

e7ov7B1[B:3-251] Image Pymol Jmol Links: PDB, SCOP, CATHDOI

Pizza6-S ; ligands: CU,PW9 ; X-RAY DIFFRACTION 1.80Å

e7zcjA1[A:2-252] Image Pymol Jmol Links: PDB, SCOP, CATH

Pizza6-TNH-TSH ; ligands: SIW ; X-RAY DIFFRACTION 1.560Å

e7zphA1[A:4-251] Image Pymol Jmol Links: PDB, SCOP, CATH

Pizza6-TNK-RSH ; ligands: SIW ; X-RAY DIFFRACTION 1.660Å

e7zpwA1[A:2-252] Image Pymol Jmol Links: PDB, SCOP, CATH

Pizza6-TSK-TSH ; ligands: SIW ; X-RAY DIFFRACTION 1.800Å

e7zpwD1[D:2-252] Image Pymol Jmol Links: PDB, SCOP, CATH

Pizza6-TSK-TSH ; ligands: SIW ; X-RAY DIFFRACTION 1.800Å

e7zpzA1[A:5-254] Image Pymol Jmol Links: PDB, SCOP, CATH

Pizza6-TSR-TSH ; ligands: SIW ; X-RAY DIFFRACTION 1.570Å

e7zq2A1[A:1-251] Image Pymol Jmol Links: PDB, SCOP, CATH

Pizza6-RSH-TSH ; ligands: SIW ; X-RAY DIFFRACTION 1.600Å

e7zqgA1[A:2-251] Image Pymol Jmol Links: PDB, SCOP, CATH

Pizza6-KSH-TSH ; ligands: SIW ; X-RAY DIFFRACTION 1.800Å

e3fw0A1[A:492-820] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Peptidyl-glycine alpha-amidating monooxygenase ; ligands: CA,HG,HH3 ; X-RAY DIFFRACTION 2.50Å

e3fvzA2[A:492-820] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE ; ligands: ACT,CA,FE,GOL,ZN ; X-RAY DIFFRACTION 2.35Å

e6gc1C2[C:219-572] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

NHL repeat-containing protein 2 ; X-RAY DIFFRACTION 2.700Å

e6g7wA1[A:219-572] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

NHL repeat-containing protein 2 ; X-RAY DIFFRACTION 1.420Å

e6gc1A1[A:219-572] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

NHL repeat-containing protein 2 ; X-RAY DIFFRACTION 2.700Å

e6gc1B1[B:219-572] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

NHL repeat-containing protein 2 ; X-RAY DIFFRACTION 2.700Å

e6gc1D2[D:219-572] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

NHL repeat-containing protein 2 ; X-RAY DIFFRACTION 2.700Å

e7djjA1[A:557-886] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Protein SUPPRESSOR OF QUENCHING 1, chloroplastic ; ligands: NA,SO4 ; X-RAY DIFFRACTION 2.69806436563Å

e7djkA1[A:563-886] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Protein SUPPRESSOR OF QUENCHING 1, chloroplastic ; ligands: CL,NA ; X-RAY DIFFRACTION 2.80Å

e1q7fA1[A:759-1037] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

brain tumor CG10719-PA ; X-RAY DIFFRACTION 1.95Å

F: Unmapped domains

Pseudo group of domains that do not map to PFam family profiles. Domains inside should not be considered as in one family.

beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander

a+b two layersone alpha-helix layer and one beta-sheet layer

a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers

a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers

a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers

a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain

a/b barrelsrepeating beta-alpha units form a barrel

a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers

mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions

few secondary structure elementsstabilized by cofactors or disulfides

extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes