Home Help

X - Possible homology level

H - Homology level

T - Topology level

F - Family level

* - Provisional representative

Keyword search

Evolutionary classification of protein domain structures

alpha arraysalpha-helix arrays with mainly perpendicular helices

alpha bundlesalpha-helix bundles with mainly parallel helices

alpha superhelicesrepeating alpha-helix hairpins form a superhelix

alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain

alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix

beta barrelssingle beta-sheet folded upon itself to form a barrel

beta meanderssingle beta-sheet with mainly meander topology

beta sandwichestwo beta-sheets stacked together to form a sandwich

beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain

beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander

a+b two layersone alpha-helix layer and one beta-sheet layer

a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers

a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers

a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers

a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain

a/b barrelsrepeating beta-alpha units form a barrel

a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers

X: Phosphorylase/hydrolase-like
H: Zn-dependent exopeptidases
T: Zn-dependent exopeptidases
F: Peptidase_M28

PF04389 CL0105

Representatives:

e1rtqA1[A:1-291] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

BACTERIAL LEUCYL AMINOPEPTIDASE ; ligands: NA,SCN,ZN ; X-RAY DIFFRACTION 0.95Å

e6gbxB1[B:34-361] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Glutaminyl-peptide cyclotransferase ; ligands: EDO,S77,SO4,ZN ; X-RAY DIFFRACTION 1.72Å

e6gbxC1[C:34-361] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Glutaminyl-peptide cyclotransferase ; ligands: EDO,S77,SO4,ZN ; X-RAY DIFFRACTION 1.72Å

e6d03B2[B:120-189,B:383-608] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Transferrin receptor protein 1 ; ligands: CA,NAG ; ELECTRON MICROSCOPY

e6d04A2[A:120-189,A:383-608] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Transferrin receptor protein 1 ; ligands: CA,NAG ; ELECTRON MICROSCOPY

e6d04B2[B:120-189,B:383-608] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Transferrin receptor protein 1 ; ligands: CA,NAG ; ELECTRON MICROSCOPY

e6d05A2[A:120-189,A:383-608] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Transferrin receptor protein 1 ; ligands: CA,NAG ; ELECTRON MICROSCOPY

e6d05B3[B:120-189,B:383-608] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Transferrin receptor protein 1 ; ligands: CA,NAG ; ELECTRON MICROSCOPY

e6etyA1[A:55-117,A:351-593] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Glutamate carboxypeptidase 2 ; ligands: BXK,CA,CL,NAG,ZN ; X-RAY DIFFRACTION 1.68Å

e6h7yA1[A:55-117,A:351-593] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Glutamate carboxypeptidase 2 ; ligands: CA,CL,EDO,FVZ,NAG,PEG,PGE,TAM,ZN ; X-RAY DIFFRACTION 1.81Å

e6h7zA2[A:55-117,A:351-593] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Glutamate carboxypeptidase 2 ; ligands: CA,CL,EDO,FVW,NAG,PEG,TRS,ZN ; X-RAY DIFFRACTION 2Å

e6hkjA2[A:55-117,A:351-593] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Glutamate carboxypeptidase 2 ; ligands: CA,CL,G8W,NAG,TAM,ZN ; X-RAY DIFFRACTION 2.09Å

e6hkzA3[A:55-117,A:351-593] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Glutamate carboxypeptidase 2 ; ligands: CA,CL,GBZ,NAG,ZN ; X-RAY DIFFRACTION 2.09Å

e6f5lA3[A:55-117,A:351-593] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Glutamate carboxypeptidase 2 ; ligands: CA,CL,CQB,NAG,PGE,ZN ; X-RAY DIFFRACTION 1.63Å

e6ez9A1[A:55-117,A:351-591] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Glutamate carboxypeptidase 2 ; ligands: C68,CA,CL,NAG,ZN ; X-RAY DIFFRACTION 1.61Å

e6fe5A1[A:55-117,A:351-591] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Glutamate carboxypeptidase 2 ; ligands: CA,CL,D6E,NAG,ZN ; X-RAY DIFFRACTION 1.52Å

e6qqlA1[A:41-329] Image Pymol Jmol Links: PDB, SCOP, CATH

Glutamine cyclotransferase ; ligands: ZN ; X-RAY DIFFRACTION 2.810Å

e6qroA1[A:43-334] Image Pymol Jmol Links: PDB, SCOP, CATH

Glutamine cyclotransferase ; ligands: SO4,ZN ; X-RAY DIFFRACTION 2.100Å

e6qqlB1[B:41-328] Image Pymol Jmol Links: PDB, SCOP, CATH

Glutamine cyclotransferase ; ligands: ZN ; X-RAY DIFFRACTION 2.810Å

e6qroB1[B:43-334] Image Pymol Jmol Links: PDB, SCOP, CATH

Glutamine cyclotransferase ; ligands: SO4,ZN ; X-RAY DIFFRACTION 2.100Å

e6qroC1[C:44-334] Image Pymol Jmol Links: PDB, SCOP, CATH

Glutamine cyclotransferase ; ligands: SO4,ZN ; X-RAY DIFFRACTION 2.100Å

e6qroD1[D:43-334] Image Pymol Jmol Links: PDB, SCOP, CATH

Glutamine cyclotransferase ; ligands: SO4,ZN ; X-RAY DIFFRACTION 2.100Å

e6gsrAb1[Ab:121-189,Ab:383-608] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Transferrin receptor protein 1 ; ELECTRON MICROSCOPY

e6gsrAq3[Aq:121-189,Aq:383-608] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Transferrin receptor protein 1 ; ELECTRON MICROSCOPY

e6h5iAb3[Ab:121-189,Ab:383-608] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Transferrin receptor protein 1 ; ELECTRON MICROSCOPY

e6h5iAq3[Aq:121-189,Aq:383-608] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Transferrin receptor protein 1 ; ELECTRON MICROSCOPY

e6hc6A1[A:39-120,A:222-455] Image Pymol Jmol Links: PDB, SCOP, CATH

Aminopeptidase YwaD ; ligands: ACT,GOL,ZN ; X-RAY DIFFRACTION 1.77Å

e6hc6B1[B:39-120,B:222-455] Image Pymol Jmol Links: PDB, SCOP, CATH

Aminopeptidase YwaD ; ligands: ACT,GOL,ZN ; X-RAY DIFFRACTION 1.77Å

e6hc6C2[C:39-120,C:222-455] Image Pymol Jmol Links: PDB, SCOP, CATH

Aminopeptidase YwaD ; ligands: ACT,GOL,ZN ; X-RAY DIFFRACTION 1.77Å

e6hc7A2[A:39-120,A:222-455] Image Pymol Jmol Links: PDB, SCOP, CATH

Aminopeptidase Y (Arg Lys Leu preference) ; ligands: ACT,CL,SO4,ZN ; X-RAY DIFFRACTION 2.5Å

e6hc7B2[B:39-120,B:222-455] Image Pymol Jmol Links: PDB, SCOP, CATH

Aminopeptidase Y (Arg Lys Leu preference) ; ligands: ACT,CL,SO4,ZN ; X-RAY DIFFRACTION 2.5Å

e6hc7C1[C:39-120,C:222-455] Image Pymol Jmol Links: PDB, SCOP, CATH

Aminopeptidase Y (Arg Lys Leu preference) ; ligands: ACT,CL,SO4,ZN ; X-RAY DIFFRACTION 2.5Å

e6icaA2[A:142-424] Image Pymol Jmol Links: PDB, SCOP, CATH

Aminopeptidase ; ligands: ACT,GOL,SO4,ZN ; X-RAY DIFFRACTION 2.195Å

e6icaB2[B:142-424] Image Pymol Jmol Links: PDB, SCOP, CATH

Aminopeptidase ; ligands: GOL,SO4,ZN ; X-RAY DIFFRACTION 2.195Å

e6icaC1[C:142-424] Image Pymol Jmol Links: PDB, SCOP, CATH

Aminopeptidase ; ligands: GOL,SO4,ZN ; X-RAY DIFFRACTION 2.195Å

e6okdA2[A:2-71,A:265-490] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Transferrin receptor protein 1 ; ligands: GOL ; X-RAY DIFFRACTION 1.850Å

e6okdB1[B:3-71,B:265-490] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Transferrin receptor protein 1 ; ligands: GOL ; X-RAY DIFFRACTION 1.850Å

e6rbcA2[A:55-117,A:351-593] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Glutamate carboxypeptidase 2 ; ligands: CA,CL,JX5,NAG,ZN ; X-RAY DIFFRACTION 1.77Å

e6yi1A1[A:33-361] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Glutaminyl-peptide cyclotransferase ; ligands: 66N,DIO,GOL,ORT,PEG,PG4,PHE,SO4,ZN ; X-RAY DIFFRACTION 1.920Å

e6yi1B1[B:33-361] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Glutaminyl-peptide cyclotransferase ; ligands: 66N,DIO,GOL,MES,ORT,PEG,PGE,PHE,SO4,ZN ; X-RAY DIFFRACTION 1.920Å

e6yjyA1[A:33-361] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Glutaminyl-peptide cyclotransferase ; ligands: GLN,LEU,MES,PCA,SO4,TYR,ZN ; X-RAY DIFFRACTION 1.670Å

e6yjyB1[B:33-361] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Glutaminyl-peptide cyclotransferase ; ligands: GLN,LEU,MES,PCA,SO4,TYR,ZN ; X-RAY DIFFRACTION 1.670Å

e6rtiA1[A:56-117,A:351-591] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Glutamate carboxypeptidase 2 ; ligands: CA,CL,G88,MPD,ZN ; X-RAY DIFFRACTION 2.20Å

e6s1xA1[A:55-117,A:351-591] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Glutamate carboxypeptidase 2 ; ligands: CA,CL,KRZ,NAG,ZN ; X-RAY DIFFRACTION 1.76Å

e6sgpA1[A:55-117,A:351-591] Image Pymol Jmol Links: PDB, SCOP, CATH

Glutamate carboxypeptidase 2 ; ligands: CA,CL,LDK,NA,NAG,PEG,PGE,ZN ; X-RAY DIFFRACTION 1.58Å

e6skhA3[A:55-117,A:351-591] Image Pymol Jmol Links: PDB, SCOP, CATH

Glutamate carboxypeptidase 2 ; ligands: CA,CL,EDO,GOL,LHK,NAG,ZN ; X-RAY DIFFRACTION 1.58Å

e7cozA1[A:35-361] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Glutaminyl-peptide cyclotransferase ; ligands: EDO,Q39,SO4,ZN ; X-RAY DIFFRACTION 1.850Å

e7cozB1[B:35-361] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Glutaminyl-peptide cyclotransferase ; ligands: EDO,Q39,SO4,ZN ; X-RAY DIFFRACTION 1.850Å

e7cozC1[C:35-361] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Glutaminyl-peptide cyclotransferase ; ligands: EDO,Q39,SO4,ZN ; X-RAY DIFFRACTION 1.850Å

e7cp0A1[A:35-361] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Glutaminyl-peptide cyclotransferase ; ligands: EDO,SO4,ZN ; X-RAY DIFFRACTION 1.700Å

e7cp0B1[B:35-361] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Glutaminyl-peptide cyclotransferase ; ligands: EDO,SO4,ZN ; X-RAY DIFFRACTION 1.700Å

e7cp0C1[C:35-361] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Glutaminyl-peptide cyclotransferase ; ligands: EDO,SO4,ZN ; X-RAY DIFFRACTION 1.700Å

e7d17A1[A:29-357] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Glutaminyl-peptide cyclotransferase ; ligands: ZN ; X-RAY DIFFRACTION 2.98Å

e7d1dA1[A:38-331] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Glutamine cyclotransferase ; ligands: 1BN,ZN ; X-RAY DIFFRACTION 1.75Å

e7d18A1[A:16-286] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Peptidase M28 ; ligands: GOL,NA,SO4,TRS,ZN ; X-RAY DIFFRACTION 1.33Å

e7d21A1[A:25-353] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Glutaminyl-peptide cyclotransferase ; ligands: EPE,ZN ; X-RAY DIFFRACTION 1.97Å

e6wrwB3[B:121-189,B:383-608] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Transferrin receptor protein 1 ; ligands: CA ; X-RAY DIFFRACTION 2.77Å

e7d1bA1[A:27-30,A:67-364] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Leucine aminopeptidase ; ligands: CL,GOL,PG5,ZN ; X-RAY DIFFRACTION 1.24Å

e7d1eA1[A:40-331] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Leucine aminopeptidase ; ligands: AHN,ZN ; X-RAY DIFFRACTION 1.85Å

e6wrvA1[A:121-189,A:383-608] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Transferrin receptor protein 1 ; ligands: CA ; X-RAY DIFFRACTION 2.47Å

e6wrvB1[B:121-189,B:383-608] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Transferrin receptor protein 1 ; ligands: CA ; X-RAY DIFFRACTION 2.47Å

e6wrvE3[E:121-189,E:383-608] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Transferrin receptor protein 1 ; ligands: CA ; X-RAY DIFFRACTION 2.47Å

e6wrwA1[A:121-189,A:383-608] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Transferrin receptor protein 1 ; ligands: CA ; X-RAY DIFFRACTION 2.77Å

e6wrxA3[A:121-189,A:383-608] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Transferrin receptor protein 1 ; ligands: CA,NAG ; X-RAY DIFFRACTION 3.067Å

e7d1hA1[A:28-353] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Glutaminyl-peptide cyclotransferase ; ligands: ZN ; X-RAY DIFFRACTION 1.69Å

e7d1nA1[A:28-353] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Glutaminyl-peptide cyclotransferase ; ligands: BCT,CU ; X-RAY DIFFRACTION 2.26Å

e7d1pA1[A:28-353] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Glutaminyl-peptide cyclotransferase ; ligands: BCT,CD ; X-RAY DIFFRACTION 2.36Å

e7d1yA1[A:28-353] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Glutaminyl-peptide cyclotransferase ; ligands: CO ; X-RAY DIFFRACTION 1.95Å

e7d23A1[A:28-353] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Glutaminyl-peptide cyclotransferase ; ligands: K,TRS ; X-RAY DIFFRACTION 1.40Å

e7d2bA1[A:28-353] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Glutaminyl-peptide cyclotransferase ; ligands: NI ; X-RAY DIFFRACTION 1.99Å

e7d2dA1[A:28-353] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Glutaminyl-peptide cyclotransferase ; ligands: MN ; X-RAY DIFFRACTION 1.80Å

e7d2iA1[A:29-353] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Glutaminyl-peptide cyclotransferase ; ligands: FE,SO4 ; X-RAY DIFFRACTION 1.85Å

e7d2jA1[A:28-353] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Glutaminyl-peptide cyclotransferase ; ligands: BCT,CD ; X-RAY DIFFRACTION 1.60Å

e6wrxB1[B:121-189,B:383-608] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Transferrin receptor protein 1 ; ligands: CA,NAG ; X-RAY DIFFRACTION 3.067Å

e6zepA1[A:26-377] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Leucine aminopeptidase A ; ligands: CL,EDO,ZN ; X-RAY DIFFRACTION 1.61Å

e7cjeC1[C:41-329] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Glutamine cyclotransferase-related protein ; ligands: MG,ZN ; X-RAY DIFFRACTION 1.95Å

e7oezA1[A:77-377] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Leucine aminopeptidase A ; ligands: CL,EDO,LEU,SO4,ZN ; X-RAY DIFFRACTION 2.48Å

e6zeqA1[A:77-377] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Leucine aminopeptidase A ; ligands: CL,EDO,SO4,ZN ; X-RAY DIFFRACTION 1.97Å

e7cjeA1[A:41-328] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Glutamine cyclotransferase-related protein ; ligands: GOL,MG,ZN ; X-RAY DIFFRACTION 1.95Å

e7cjgA1[A:41-329] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Glutamine cyclotransferase-related protein ; ligands: DMD,GOL,MG,NO3,ZN ; X-RAY DIFFRACTION 2.000Å

e7cjgB1[B:41-328] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Glutamine cyclotransferase-related protein ; ligands: DMD,GOL,MG,NO3,ZN ; X-RAY DIFFRACTION 2.000Å

e7zqsB3[B:120-189,B:383-608] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Transferrin receptor protein 1 ; ELECTRON MICROSCOPY

e7zqsD1[D:120-189,D:383-608] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Transferrin receptor protein 1 ; ELECTRON MICROSCOPY

Previous

e1tkjA1[A:1-277] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH

AMINOPEPTIDASE ; ligands: CA,MED,ZN ; X-RAY DIFFRACTION 1.15Å

e3bi1A2[A:57-117,A:351-593] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

GLUTAMATE CARBOXYPEPTIDASE 2 ; ligands: 3BI,CA,CL,NAG,ZN ; X-RAY DIFFRACTION 1.5Å

e2afwA1[A:33-361] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Glutaminyl-peptide cyclotransferase ; ligands: AHN,SO4,ZN ; X-RAY DIFFRACTION 1.56Å

e2ek9A2[A:5-64,A:199-416] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH

AMINOPEPTIDASE ; ligands: BES,IPA,ZN ; X-RAY DIFFRACTION 1.97Å

e5gneA2[A:115-397] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Leucine aminopeptidase ; ligands: SO4,ZN ; X-RAY DIFFRACTION 2.5Å

e1de4C2[C:122-189,C:383-608] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

TRANSFERRIN RECEPTOR ; ligands: CA,NAG ; X-RAY DIFFRACTION 2.8Å

mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions

few secondary structure elementsstabilized by cofactors or disulfides

extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes