Evolutionary classification of protein domain structures
alpha arraysalpha-helix arrays with mainly perpendicular helices




Representatives:
e1s8nA2[A:143-200]
nonrep
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PUTATIVE ANTITERMINATOR ; ligands: AZI ; X-RAY DIFFRACTION 1.48Å
e4akkA3[A:333-391]
nonrep
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NITRATE REGULATORY PROTEIN ; X-RAY DIFFRACTION 2.15Å
e1qo0D2[D:135-190]
nonrep
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AMIR ; X-RAY DIFFRACTION 2.250Å
e1qo0E1[E:135-195] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
AMIR ; X-RAY DIFFRACTION 2.250Å
e1sd5A1[A:143-200] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
putative antiterminator ; ligands: IOD ; X-RAY DIFFRACTION 1.68Å
e6hmjA3[A:121-206] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Putative PAS/PAC sensor protein ; ligands: GOL ; X-RAY DIFFRACTION 2.51Å
e6hmjC3[C:121-206] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Putative PAS/PAC sensor protein ; ligands: GOL ; X-RAY DIFFRACTION 2.51Å
e6hmjD3[D:121-206] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Putative PAS/PAC sensor protein ; ligands: GOL ; X-RAY DIFFRACTION 2.51Å
e6ww6A2[A:127-189] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Response regulator ; X-RAY DIFFRACTION 3.80Å
e6ww6B2[B:127-190] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Response regulator ; X-RAY DIFFRACTION 3.80Å
alpha bundlesalpha-helix bundles with mainly parallel helices
alpha superhelicesrepeating alpha-helix hairpins form a superhelix
alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain
alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix
beta barrelssingle beta-sheet folded upon itself to form a barrel
beta meanderssingle beta-sheet with mainly meander topology
beta sandwichestwo beta-sheets stacked together to form a sandwich
beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain
beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander
a+b two layersone alpha-helix layer and one beta-sheet layer
a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers
a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers
a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers
a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain
a/b barrelsrepeating beta-alpha units form a barrel
a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers
mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions
few secondary structure elementsstabilized by cofactors or disulfides
extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes