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X - Possible homology level

H - Homology level

T - Topology level

F - Family level

* - Provisional representative


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Evolutionary classification of protein domain structures

alpha arraysalpha-helix arrays with mainly perpendicular helices

X: RuvA-C
H: ANTAR domain
T: ANTAR domain
F: ANTAR

PF03861

Representatives:

e1s8nA2[A:143-200] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

PUTATIVE ANTITERMINATOR ; ligands: AZI ; X-RAY DIFFRACTION 1.48Å

e4akkA3[A:333-391] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

NITRATE REGULATORY PROTEIN ; X-RAY DIFFRACTION 2.15Å

e1qo0D2[D:135-190] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

AMIR ; X-RAY DIFFRACTION 2.250Å

e1qo0E1[E:135-195] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

AMIR ; X-RAY DIFFRACTION 2.250Å

e1sd5A1[A:143-200] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

putative antiterminator ; ligands: IOD ; X-RAY DIFFRACTION 1.68Å

e6hmjA3[A:121-206] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative PAS/PAC sensor protein ; ligands: GOL ; X-RAY DIFFRACTION 2.51Å

e6hmjC3[C:121-206] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative PAS/PAC sensor protein ; ligands: GOL ; X-RAY DIFFRACTION 2.51Å

e6hmjD3[D:121-206] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Putative PAS/PAC sensor protein ; ligands: GOL ; X-RAY DIFFRACTION 2.51Å

e6ww6A2[A:127-189] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Response regulator ; X-RAY DIFFRACTION 3.80Å

e6ww6B2[B:127-190] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Response regulator ; X-RAY DIFFRACTION 3.80Å

alpha bundlesalpha-helix bundles with mainly parallel helices

alpha superhelicesrepeating alpha-helix hairpins form a superhelix

alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain

alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix

beta barrelssingle beta-sheet folded upon itself to form a barrel

beta meanderssingle beta-sheet with mainly meander topology

beta sandwichestwo beta-sheets stacked together to form a sandwich

beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain

beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander

a+b two layersone alpha-helix layer and one beta-sheet layer

a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers

a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers

a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers

a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain

a/b barrelsrepeating beta-alpha units form a barrel

a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers

mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions

few secondary structure elementsstabilized by cofactors or disulfides

extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes