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X - Possible homology level

H - Homology level

T - Topology level

F - Family level

* - Provisional representative


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Evolutionary classification of protein domain structures

alpha arraysalpha-helix arrays with mainly perpendicular helices

X: alpha-helical ferredoxin-like
H: alpha-helical ferredoxin
T: alpha-helical ferredoxin
F: Fer4_10

PF13237 CL0344

Representatives:

e1kf6B1[B:106-243] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

FUMARATE REDUCTASE IRON-SULFUR PROTEIN ; ligands: CE1,F3S,HQO,SF4 ; X-RAY DIFFRACTION 2.7Å

e1kf6N1[N:106-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

FUMARATE REDUCTASE IRON-SULFUR PROTEIN ; ligands: F3S,HQO,SF4 ; X-RAY DIFFRACTION 2.7Å

e1kfyB1[B:106-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

FUMARATE REDUCTASE IRON-SULFUR PROTEIN ; ligands: BRS,CE1,F3S,SF4 ; X-RAY DIFFRACTION 3.6Å

e1kfyN1[N:106-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

FUMARATE REDUCTASE IRON-SULFUR PROTEIN ; ligands: BRS,F3S,SF4 ; X-RAY DIFFRACTION 3.6Å

e1l0vB1[B:106-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

FUMARATE REDUCTASE IRON-SULFUR PROTEIN ; ligands: CE1,F3S,MQ7,SF4 ; X-RAY DIFFRACTION 3.3Å

e1l0vN1[N:106-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

FUMARATE REDUCTASE IRON-SULFUR PROTEIN ; ligands: F3S,MQ7,SF4 ; X-RAY DIFFRACTION 3.3Å

e2b76B1[B:106-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Fumarate reductase iron-sulfur protein ; ligands: F3S,SF4 ; X-RAY DIFFRACTION 3.3Å

e2b76N1[N:106-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Fumarate reductase iron-sulfur protein ; ligands: F3S,SF4 ; X-RAY DIFFRACTION 3.3Å

e3cirB1[B:106-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Fumarate reductase iron-sulfur subunit ; ligands: F3S,SF4 ; X-RAY DIFFRACTION 3.65Å

e3cirN1[N:106-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Fumarate reductase iron-sulfur subunit ; ligands: F3S,SF4 ; X-RAY DIFFRACTION 3.65Å

e3p4pB1[B:106-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Fumarate reductase iron-sulfur protein ; ligands: F3S,SF4 ; X-RAY DIFFRACTION 2.8Å

e3p4pN1[N:106-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Fumarate reductase iron-sulfur protein ; ligands: F3S,SF4 ; X-RAY DIFFRACTION 2.8Å

e3p4qB1[B:106-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

FUMARATE REDUCTASE IRON-SULFUR PROTEIN ; ligands: F3S,SF4 ; X-RAY DIFFRACTION 3.35Å

e3p4qN1[N:106-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

FUMARATE REDUCTASE IRON-SULFUR PROTEIN ; ligands: F3S,SF4 ; X-RAY DIFFRACTION 3.35Å

e3p4rB1[B:106-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Fumarate reductase iron-sulfur subunit ; ligands: F3S,SF4 ; X-RAY DIFFRACTION 2.700Å

e3p4rN1[N:106-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Fumarate reductase iron-sulfur subunit ; ligands: F3S,SF4 ; X-RAY DIFFRACTION 2.700Å

e3p4sB1[B:106-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Fumarate reductase iron-sulfur subunit ; ligands: F3S,SF4 ; X-RAY DIFFRACTION 3.1Å

e3p4sN1[N:106-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Fumarate reductase iron-sulfur subunit ; ligands: F3S,SF4 ; X-RAY DIFFRACTION 3.1Å

e4kx6B1[B:106-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Fumarate reductase (Anaerobic), Fe-S subunit ; ligands: F3S,MQ7,SF4 ; X-RAY DIFFRACTION 2.95Å

e4kx6N1[N:106-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Fumarate reductase (Anaerobic), Fe-S subunit ; ligands: F3S,MQ7,SF4 ; X-RAY DIFFRACTION 2.95Å

e5vpnB2[B:106-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Fumarate reductase iron-sulfur subunit ; ligands: F3S,SF4 ; X-RAY DIFFRACTION 4.22Å

e5vpnF2[F:106-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Fumarate reductase iron-sulfur subunit ; ligands: F3S,SF4 ; X-RAY DIFFRACTION 4.22Å

e6awfB1[B:106-241] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Fumarate reductase iron-sulfur subunit ; ligands: F3S,SF4 ; X-RAY DIFFRACTION 3.35Å

e6awfF1[F:106-240] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Fumarate reductase iron-sulfur subunit ; ligands: F3S,SF4 ; X-RAY DIFFRACTION 3.35Å

e6lumB2[B:133-260] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Succinate dehydrogenase subunit B ; ligands: F3S,HEM,PEV,SF4 ; ELECTRON MICROSCOPY

e6lumK2[K:133-260] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Succinate dehydrogenase subunit B ; ligands: F3S,HEM,PEV,SF4 ; ELECTRON MICROSCOPY

e6lumQ1[Q:133-260] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Succinate dehydrogenase subunit B ; ligands: F3S,HEM,PEV,SF4 ; ELECTRON MICROSCOPY

F: Unmapped domains

Pseudo group of domains that do not map to PFam family profiles. Domains inside should not be considered as in one family.

alpha bundlesalpha-helix bundles with mainly parallel helices

alpha superhelicesrepeating alpha-helix hairpins form a superhelix

alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain

alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix

beta barrelssingle beta-sheet folded upon itself to form a barrel

beta meanderssingle beta-sheet with mainly meander topology

beta sandwichestwo beta-sheets stacked together to form a sandwich

beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain

beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander

a+b two layersone alpha-helix layer and one beta-sheet layer

a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers

a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers

a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers

a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain

a/b barrelsrepeating beta-alpha units form a barrel

a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers

mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions

few secondary structure elementsstabilized by cofactors or disulfides

extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes