Evolutionary classification of protein domain structures
alpha arraysalpha-helix arrays with mainly perpendicular helices




Representatives:
e1kf6B1[B:106-243]
nonrep
Image
Pymol
Jmol Links:
PDB,
SCOP,
CATH, PubMed,
DOI
FUMARATE REDUCTASE IRON-SULFUR PROTEIN ; ligands: CE1,F3S,HQO,SF4 ; X-RAY DIFFRACTION 2.7Å
e1kf6N1[N:106-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
FUMARATE REDUCTASE IRON-SULFUR PROTEIN ; ligands: F3S,HQO,SF4 ; X-RAY DIFFRACTION 2.7Å
e1kfyB1[B:106-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
FUMARATE REDUCTASE IRON-SULFUR PROTEIN ; ligands: BRS,CE1,F3S,SF4 ; X-RAY DIFFRACTION 3.6Å
e1kfyN1[N:106-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
FUMARATE REDUCTASE IRON-SULFUR PROTEIN ; ligands: BRS,F3S,SF4 ; X-RAY DIFFRACTION 3.6Å
e1l0vB1[B:106-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
FUMARATE REDUCTASE IRON-SULFUR PROTEIN ; ligands: CE1,F3S,MQ7,SF4 ; X-RAY DIFFRACTION 3.3Å
e1l0vN1[N:106-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
FUMARATE REDUCTASE IRON-SULFUR PROTEIN ; ligands: F3S,MQ7,SF4 ; X-RAY DIFFRACTION 3.3Å
e2b76B1[B:106-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Fumarate reductase iron-sulfur protein ; ligands: F3S,SF4 ; X-RAY DIFFRACTION 3.3Å
e2b76N1[N:106-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Fumarate reductase iron-sulfur protein ; ligands: F3S,SF4 ; X-RAY DIFFRACTION 3.3Å
e3cirB1[B:106-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Fumarate reductase iron-sulfur subunit ; ligands: F3S,SF4 ; X-RAY DIFFRACTION 3.65Å
e3cirN1[N:106-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Fumarate reductase iron-sulfur subunit ; ligands: F3S,SF4 ; X-RAY DIFFRACTION 3.65Å
e3p4pB1[B:106-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Fumarate reductase iron-sulfur protein ; ligands: F3S,SF4 ; X-RAY DIFFRACTION 2.8Å
e3p4pN1[N:106-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Fumarate reductase iron-sulfur protein ; ligands: F3S,SF4 ; X-RAY DIFFRACTION 2.8Å
e3p4qB1[B:106-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
FUMARATE REDUCTASE IRON-SULFUR PROTEIN ; ligands: F3S,SF4 ; X-RAY DIFFRACTION 3.35Å
e3p4qN1[N:106-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
FUMARATE REDUCTASE IRON-SULFUR PROTEIN ; ligands: F3S,SF4 ; X-RAY DIFFRACTION 3.35Å
e3p4rB1[B:106-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Fumarate reductase iron-sulfur subunit ; ligands: F3S,SF4 ; X-RAY DIFFRACTION 2.700Å
e3p4rN1[N:106-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Fumarate reductase iron-sulfur subunit ; ligands: F3S,SF4 ; X-RAY DIFFRACTION 2.700Å
e3p4sB1[B:106-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Fumarate reductase iron-sulfur subunit ; ligands: F3S,SF4 ; X-RAY DIFFRACTION 3.1Å
e3p4sN1[N:106-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Fumarate reductase iron-sulfur subunit ; ligands: F3S,SF4 ; X-RAY DIFFRACTION 3.1Å
e4kx6B1[B:106-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Fumarate reductase (Anaerobic), Fe-S subunit ; ligands: F3S,MQ7,SF4 ; X-RAY DIFFRACTION 2.95Å
e4kx6N1[N:106-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Fumarate reductase (Anaerobic), Fe-S subunit ; ligands: F3S,MQ7,SF4 ; X-RAY DIFFRACTION 2.95Å
e5vpnB2[B:106-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Fumarate reductase iron-sulfur subunit ; ligands: F3S,SF4 ; X-RAY DIFFRACTION 4.22Å
e5vpnF2[F:106-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Fumarate reductase iron-sulfur subunit ; ligands: F3S,SF4 ; X-RAY DIFFRACTION 4.22Å
e6awfB1[B:106-241] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Fumarate reductase iron-sulfur subunit ; ligands: F3S,SF4 ; X-RAY DIFFRACTION 3.35Å
e6awfF1[F:106-240] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Fumarate reductase iron-sulfur subunit ; ligands: F3S,SF4 ; X-RAY DIFFRACTION 3.35Å
e6lumB2[B:133-260] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Succinate dehydrogenase subunit B ; ligands: F3S,HEM,PEV,SF4 ; ELECTRON MICROSCOPY
e6lumK2[K:133-260] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Succinate dehydrogenase subunit B ; ligands: F3S,HEM,PEV,SF4 ; ELECTRON MICROSCOPY
e6lumQ1[Q:133-260] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Succinate dehydrogenase subunit B ; ligands: F3S,HEM,PEV,SF4 ; ELECTRON MICROSCOPY

Pseudo group of domains that do not map to PFam family profiles. Domains inside should not be considered as in one family.
alpha bundlesalpha-helix bundles with mainly parallel helices
alpha superhelicesrepeating alpha-helix hairpins form a superhelix
alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain
alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix
beta barrelssingle beta-sheet folded upon itself to form a barrel
beta meanderssingle beta-sheet with mainly meander topology
beta sandwichestwo beta-sheets stacked together to form a sandwich
beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain
beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander
a+b two layersone alpha-helix layer and one beta-sheet layer
a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers
a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers
a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers
a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain
a/b barrelsrepeating beta-alpha units form a barrel
a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers
mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions
few secondary structure elementsstabilized by cofactors or disulfides
extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes