Evolutionary classification of protein domain structures

alpha arraysalpha-helix arrays with mainly perpendicular helices

alpha bundlesalpha-helix bundles with mainly parallel helices

alpha superhelicesrepeating alpha-helix hairpins form a superhelix

alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain

alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix

beta barrelssingle beta-sheet folded upon itself to form a barrel

beta meanderssingle beta-sheet with mainly meander topology

beta sandwichestwo beta-sheets stacked together to form a sandwich

beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain

beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander

a+b two layersone alpha-helix layer and one beta-sheet layer

a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers

a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers

a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers

a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain

a/b barrelsrepeating beta-alpha units form a barrel

a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers

mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions

few secondary structure elementsstabilized by cofactors or disulfides

X: barrettide A

X: Leech antihemostatic protein

X: Plant proteinase inhibitors

X: Embryo surrounding factor (ESF) peptides

X: Type AII lantibiotic bovicin HJ50

X: PSCD domain of pleuralin-1

X: Sea anemone toxin k-like

X: Trefoil/Plexin domain-like

X: Variant surface glycoprotein MITAT 1.2, VSG 221, C-terminal domain

X: PMP inhibitors

X: Ectatomin/elicitin

X: Bowman-Birk inhibitor, BBI-like

X: DnaJ/Hsp40 cysteine-rich domain

X: P-domain of calnexin/calreticulin

X: Thyroglobulin type-1 domain

X: Shisa 3 N-terminal domain

X: TAZ domain

X: Zn-binding domain in DNA polymerase III subunits

X: N-terminal domain of helicase-loading protein DnaI

X: Tim10/DDP

X: Sec-C motif

X: Vanabin-like

X: Crambin-like

X: Blood coagulation inhibitor (disintegrin)

X: Insulin-like

X: Cellophane-induced 1 (cin1) repeats

X: Conotoxin im17a

X: Conotoxin F14

X: con-ikot-ikot toxin

X: TB module/8-cys domain

X: Phospholipase A2, PLA2

X: Zn2/Cys6 DNA-binding domain

X: HIPIP (high potential iron protein)

X: Ezh2 MCSS domain

X: C-P lyase subunit PhnJ C-terminal Zn-binding domain

X: Pre-mRNA-splicing factor BUD31

X: Protein-only RNase P Zn-binding domain

X: RelA zinc-finger domain

X: Rubredoxin-like

binds one zinc with two CxxC motifs on two beta-hairpins

H: Rubredoxin-related

T: Rubredoxin-related

F: Rubredoxin

PF00301 CL0045

Representatives:

e2dsxA1[A:1-52] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin ; ligands: FE ; X-RAY DIFFRACTION 0.68Å

e5rxnA1[A:1-52] Image Pymol Jmol Links: PDB, SCOP, CATH

RUBREDOXIN ; ligands: FE ; X-RAY DIFFRACTION

e1smmA1[A:1-52] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin ; ligands: FE,SO4 ; X-RAY DIFFRACTION 1.36Å

e1cadA1[A:1-51] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed,

RUBREDOXIN ; ligands: FE ; X-RAY DIFFRACTION

e2rdvC1[C:1-52] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RUBREDOXIN ; ligands: FE ; X-RAY DIFFRACTION 1.9Å

e1rb9A1[A:1-52] Image Pymol Jmol Links: PDB, SCOP, CATH

RUBREDOXIN ; ligands: FE2,SO4 ; X-RAY DIFFRACTION 0.92Å

e1c09B1[B:1-52] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RUBREDOXIN ; ligands: FE ; X-RAY DIFFRACTION 1.6Å

e1rwdA1[A:1-50] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin ; SOLUTION NMR

e1b13A1[A:1-52] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

PROTEIN (RUBREDOXIN) ; ligands: FE ; X-RAY DIFFRACTION 1.50Å

e1vcxA1[A:1-51] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin ; ligands: FE ; NEUTRON DIFFRACTION 1.50Å

e1zrpA1[A:1-51] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed,

RUBREDOXIN ; ligands: ZN ; SOLUTION NMR

e1r0hA1[A:1-52] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RUBREDOXIN ; ligands: CO ; X-RAY DIFFRACTION 1.7Å

e1rdgA1[A:1-52] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RUBREDOXIN ; ligands: FE,FOR ; X-RAY DIFFRACTION 1.4Å

e6rxnA1[A:0-51] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RUBREDOXIN ; ligands: FE ; X-RAY DIFFRACTION

e1iu5A1[A:1-51] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

rubredoxin ; ligands: FE ; X-RAY DIFFRACTION 1.50Å

e1r0fA1[A:1-52] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RUBREDOXIN ; ligands: GA ; X-RAY DIFFRACTION 1.6Å

e1smuA1[A:1-52] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin ; ligands: FE2 ; X-RAY DIFFRACTION 1.43Å

e4rxnA1[A:1-52] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RUBREDOXIN ; ligands: FE ; X-RAY DIFFRACTION

e2rdvA1[A:1-52] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RUBREDOXIN ; ligands: FE ; X-RAY DIFFRACTION 1.9Å

e1e8jA1[A:1-52] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RUBREDOXIN ; SOLUTION NMR

e1smwA1[A:1-52] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin ; ligands: FE2 ; X-RAY DIFFRACTION 1.38Å

e1r0iA1[A:1-52] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RUBREDOXIN ; ligands: CD ; X-RAY DIFFRACTION 1.5Å

e1iroA1[A:1-52] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RUBREDOXIN ; ligands: FE ; X-RAY DIFFRACTION 1.1Å

e1bq8A1[A:1-52] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed,

PROTEIN (RUBREDOXIN) ; ligands: FE ; X-RAY DIFFRACTION 1.1Å

e1rdvA1[A:1-52] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RUBREDOXIN ; ligands: FE ; X-RAY DIFFRACTION 2.0Å

e1caaA1[A:1-51] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed,

RUBREDOXIN ; ligands: FE ; X-RAY DIFFRACTION

e1s24A1[A:2-53] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin 2 ; ligands: CD ; SOLUTION NMR

e1qcvA1[A:1-51] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

PROTEIN (RUBREDOXIN VARIANT PFRD-XC4) ; SOLUTION NMR

e1t9pB1[B:101-152] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin ; ligands: FE ; X-RAY DIFFRACTION 1.5Å

e2ql0A1[A:1-52] Image Pymol Jmol Links: PDB, SCOP, CATH

Rubredoxin ; ligands: ZN ; SOLUTION NMR

e1fhmA1[A:1-52] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed,

RUBREDOXIN ; ligands: FE2 ; X-RAY DIFFRACTION 1.5Å

e1bq9A1[A:1-52] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed,

PROTEIN (RUBREDOXIN) ; ligands: FE ; X-RAY DIFFRACTION 1.2Å

e1r0gA1[A:1-52] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RUBREDOXIN ; ligands: HG ; X-RAY DIFFRACTION 1.6Å

e1t9qA1[A:1-52] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin ; ligands: FE ; X-RAY DIFFRACTION 1.8Å

e1c09C1[C:1-52] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RUBREDOXIN ; ligands: FE ; X-RAY DIFFRACTION 1.6Å

e1brfA1[A:1-51] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed,

PROTEIN (RUBREDOXIN) ; ligands: FE ; X-RAY DIFFRACTION 0.95Å

e1t9oC1[C:1-52] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin ; ligands: FE ; X-RAY DIFFRACTION 2.0Å

e1t9oB1[B:101-152] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin ; ligands: FE ; X-RAY DIFFRACTION 2.0Å

e7rxnA1[A:1-52] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RUBREDOXIN ; ligands: FE,SO4 ; X-RAY DIFFRACTION

e8rxnA1[A:1-52] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RUBREDOXIN ; ligands: FE,SO4 ; X-RAY DIFFRACTION

e1iu6A1[A:1-51] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

rubredoxin ; ligands: FE ; NEUTRON DIFFRACTION 1.6Å

e1r0jA1[A:1-52] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RUBREDOXIN ; ligands: NI ; X-RAY DIFFRACTION 2.0Å

e1irnA1[A:1-52] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RUBREDOXIN ; ligands: ZN ; X-RAY DIFFRACTION 1.2Å

e1be7A1[A:1-52] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed,

RUBREDOXIN ; ligands: FE ; X-RAY DIFFRACTION 1.65Å

e1b2oA1[A:1-52] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

PROTEIN (RUBREDOXIN) ; ligands: FE ; X-RAY DIFFRACTION 1.90Å

e1b2jA1[A:1-52] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

PROTEIN (RUBREDOXIN) ; ligands: FE ; X-RAY DIFFRACTION 1.60Å

e1b2oB1[B:1-52] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

PROTEIN (RUBREDOXIN) ; ligands: FE ; X-RAY DIFFRACTION 1.90Å

e1t9oA1[A:201-252] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin ; ligands: FE ; X-RAY DIFFRACTION 2.0Å

e1fhhA1[A:1-52] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed,

RUBREDOXIN ; ligands: FE ; X-RAY DIFFRACTION 1.5Å

e1t9pC1[C:201-252] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin ; ligands: FE ; X-RAY DIFFRACTION 1.5Å

e2rdvB1[B:1-52] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RUBREDOXIN ; ligands: FE ; X-RAY DIFFRACTION 1.9Å

e1t9pA1[A:1-52] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin ; ligands: FE ; X-RAY DIFFRACTION 1.5Å

e1bfyA1[A:1-52] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed,

RUBREDOXIN ; ligands: FE ; SOLUTION NMR

e1c09A1[A:1-52] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RUBREDOXIN ; ligands: FE ; X-RAY DIFFRACTION 1.6Å

e1h7vA1[A:1-60] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RUBREDOXIN ; ligands: ZN ; SOLUTION NMR

e3kyuA1[A:0-53] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin ; ligands: FE ; X-RAY DIFFRACTION 1.1Å

e2kkdA1[A:1-52] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin ; ligands: NI ; SOLUTION NMR

e4ar5A1[A:0-53] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RUBREDOXIN ; ligands: FE ; X-RAY DIFFRACTION 1.0Å

e4ar3A1[A:0-53] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin ; ligands: D3O,D8U,FE ; NEUTRON DIFFRACTION 1.05Å

e1spwA1[A:1-39] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin ; SOLUTION NMR

e2v3bB1[B:1-53] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RUBREDOXIN 2 ; ligands: FE ; X-RAY DIFFRACTION 2.30Å

e1yk5A1[A:1-53] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RUBREDOXIN ; ligands: FE ; X-RAY DIFFRACTION 1.79Å

e2pvxA1[A:1-53] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin ; ligands: ZN ; X-RAY DIFFRACTION 1.04Å

e2pveA1[A:1-52] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin ; ligands: ACT,ZN ; X-RAY DIFFRACTION 0.790Å

e3rygA1[A:1-51] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin ; ligands: FE ; NEUTRON DIFFRACTION 1.675Å

e1yk4A1[A:2-53] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin ; ligands: FE ; X-RAY DIFFRACTION 0.69Å

e1yk5B1[B:1-53] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RUBREDOXIN ; ligands: FE ; X-RAY DIFFRACTION 1.79Å

e1yk5C1[C:2-53] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RUBREDOXIN ; ligands: FE ; X-RAY DIFFRACTION 1.79Å

e1yk5D1[D:1-53] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RUBREDOXIN ; ligands: FE ; X-RAY DIFFRACTION 1.79Å

e2pyaA1[A:2-53] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin ; ligands: FE,NA ; X-RAY DIFFRACTION 0.860Å

e2pvxB1[B:101-154] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin ; ligands: ZN ; X-RAY DIFFRACTION 1.04Å

e2pvxC1[C:201-254] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin ; ligands: ZN ; X-RAY DIFFRACTION 1.04Å

e2pvxD1[D:301-354] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin ; ligands: ZN ; X-RAY DIFFRACTION 1.04Å

e2pvxE1[E:401-454] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin ; ligands: ZN ; X-RAY DIFFRACTION 1.04Å

e2pvxF1[F:501-554] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin ; ligands: ZN ; X-RAY DIFFRACTION 1.04Å

e2pvxG1[G:601-654] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin ; ligands: ZN ; X-RAY DIFFRACTION 1.04Å

e2pvxH1[H:701-754] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin ; ligands: ZN ; X-RAY DIFFRACTION 1.04Å

e2pveB1[B:101-152] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin ; ligands: EDO,ZN ; X-RAY DIFFRACTION 0.790Å

e2pveC1[C:201-252] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin ; ligands: ACT,EDO,ZN ; X-RAY DIFFRACTION 0.790Å

e3kyvA1[A:0-53] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin ; ligands: FE ; X-RAY DIFFRACTION 1.100Å

e3kywA1[A:0-53] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RUBREDOXIN ; ligands: FE ; X-RAY DIFFRACTION 1.1Å

e3kyxA1[A:0-51] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin ; ligands: FE ; NEUTRON DIFFRACTION 1.675Å

e3kyyA1[A:0-53] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RUBREDOXIN ; ligands: FE ; X-RAY DIFFRACTION; NEUTRON DIFFRACTION 1.1Å

e3rz6A1[A:1-51] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin ; ligands: FE ; NEUTRON DIFFRACTION 1.65Å

e3rztA1[A:1-51] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin ; ligands: FE ; NEUTRON DIFFRACTION 1.75Å

e3ss2A1[A:1-51] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin ; ligands: FE ; NEUTRON DIFFRACTION 1.65Å

e4ar6A1[A:0-53] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RUBREDOXIN ; ligands: FE ; X-RAY DIFFRACTION 0.92Å

e4ar4A1[A:0-53] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin ; ligands: D3O,D8U,FE ; NEUTRON DIFFRACTION 1.38Å

e2kn9A1[A:1-81] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RUBREDOXIN ; ligands: ZN ; SOLUTION NMR

e2m4yA1[A:1-56] Image Pymol Jmol Links: PDB, SCOP, CATH

Rubredoxin ; SOLUTION NMR

e4k9fA1[A:0-52] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin ; ligands: FE ; NEUTRON DIFFRACTION 1.75Å

e4mbsB3[B:222-229] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Chimera protein of C-C chemokine receptor type 5 and Rubredoxin ; ligands: ZN ; X-RAY DIFFRACTION 2.7Å

e4mbsA3[A:222-1054] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Chimera protein of C-C chemokine receptor type 5 and Rubredoxin ; ligands: ZN ; X-RAY DIFFRACTION 2.7Å

e4xnvA1[A:245-255] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

P2Y purinoceptor 1, Rubredoxin, P2Y purinoceptor 1 ; ligands: ZN ; X-RAY DIFFRACTION 2.2Å

e4xnwA2[A:245-255] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

P2Y purinoceptor 1,Rubredoxin,P2Y purinoceptor 1 ; ligands: ZN ; X-RAY DIFFRACTION 2.70Å

e4xnwC2[C:245-255] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

P2Y purinoceptor 1,Rubredoxin,P2Y purinoceptor 1 ; ligands: ZN ; X-RAY DIFFRACTION 2.70Å

e2ms3A1[A:1-57] Image Pymol Jmol Links: PDB, SCOP, CATH

Anaerobic nitric oxide reductase flavorubredoxin ; ligands: ZN ; SOLUTION NMR

e5ai2A1[A:0-53] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RUBREDOXIN ; ligands: CD,D8U ; NEUTRON DIFFRACTION 1.75Å

e5ai3A1[A:0-53] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RUBREDOXIN ; ligands: CD ; X-RAY DIFFRACTION 1.02Å

e5nw3A1[A:0-53] Image Pymol Jmol Links: PDB, SCOP, CATH

Rubredoxin ; ligands: FE,K,NA,PO4 ; X-RAY DIFFRACTION 0.59Å

e5vblB2[B:229-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Apelin receptor,Rubredoxin,Apelin receptor Chimera ; ligands: ZN ; X-RAY DIFFRACTION 2.60Å

e5uiwA1[A:222-229] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

C-C chemokine receptor type 5,Rubredoxin chimera ; ligands: ZN ; X-RAY DIFFRACTION 2.180Å

e5xpdA3[A:219-274] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

sugar transporter ; X-RAY DIFFRACTION 2.788Å

e5omeA1[A:0-53] Image Pymol Jmol Links: PDB, SCOP, CATH

Rubredoxin ; ligands: FE,NA,PO4 ; X-RAY DIFFRACTION 0.747Å

e6bd4A1[A:1001-429] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Frizzled-4/Rubredoxin chimeric protein ; ligands: ZN ; X-RAY DIFFRACTION 2.40Å

e6akxB2[B:222-229] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

C-C chemokine receptor type 5,Rubredoxin,C-C chemokine receptor type 5 ; ligands: ZN ; X-RAY DIFFRACTION 2.8Å

e6akyA2[A:222-229] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

C-C chemokine receptor type 5,Rubredoxin,C-C chemokine receptor type 5 ; ligands: ZN ; X-RAY DIFFRACTION 2.8Å

e6akxA1[A:222-229] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

C-C chemokine receptor type 5,Rubredoxin,C-C chemokine receptor type 5 ; ligands: ZN ; X-RAY DIFFRACTION 2.8Å

e6gpxA2[A:230-288] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

C-C chemokine receptor type 2,Rubredoxin,C-C chemokine receptor type 2 ; ligands: ZN ; X-RAY DIFFRACTION 2.70Å

e6gpsA2[A:230-237] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

C-C chemokine receptor type 2,Rubredoxin,C-C chemokine receptor type 2 ; ligands: ZN ; X-RAY DIFFRACTION 3.30Å

e6fo4A1[A:0-53] Image Pymol Jmol Links: PDB, SCOP, CATH

e6nw0A1[A:1-45] Image Pymol Jmol Links: PDB, SCOP, CATH DOI

Rubredoxin ; ligands: NI ; X-RAY DIFFRACTION 1.85Å

e6nw0B1[B:1-45] Image Pymol Jmol Links: PDB, SCOP, CATH DOI

Rubredoxin ; ligands: NI ; X-RAY DIFFRACTION 1.85Å

e6nw1A1[A:1-45] Image Pymol Jmol Links: PDB, SCOP, CATH DOI

Rubredoxin ; ligands: NI ; X-RAY DIFFRACTION 1.86Å

e6nw1B1[B:1-45] Image Pymol Jmol Links: PDB, SCOP, CATH DOI

Rubredoxin ; ligands: NI ; X-RAY DIFFRACTION 1.86Å

e6knmB1[B:229-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Apelin receptor,Rubredoxin,Apelin receptor ; ligands: ZN ; X-RAY DIFFRACTION 3.2Å

e6li2A1[A:235-263] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Chimera of G-protein coupled receptor 52 and Rubredoxin ; ligands: ZN ; X-RAY DIFFRACTION 2.8Å

e7a9aA1[A:1-60] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin ; ligands: EDO,FE,ZN ; X-RAY DIFFRACTION 1.17Å

e7a9aB1[B:1-57] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin ; ligands: CL,EDO,FE,ZN ; X-RAY DIFFRACTION 1.17Å

e7a9aC1[C:1-60] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin ; ligands: CL,FE,GOL,ZN ; X-RAY DIFFRACTION 1.17Å

e7a9aD1[D:1-60] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin ; ligands: FE,PEG,ZN ; X-RAY DIFFRACTION 1.17Å

e7a9aE1[E:1-57] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin ; ligands: EDO,FE,GOL,PEG,ZN ; X-RAY DIFFRACTION 1.17Å

e7a9aF1[F:1-60] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin ; ligands: FE,GOL,ZN ; X-RAY DIFFRACTION 1.17Å

e7a9aG1[G:1-60] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin ; ligands: EDO,FE,PEG,ZN ; X-RAY DIFFRACTION 1.17Å

e7a9aH1[H:1-57] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Rubredoxin ; ligands: FE,GOL,PEG,ZN ; X-RAY DIFFRACTION 1.17Å

e7e0lA3[A:1-52] Image Pymol Jmol Links: PDB, SCOP, CATH

Hydroxylamine reductase ; ligands: FE ; X-RAY DIFFRACTION 2.820Å

e7susA1[A:229-243] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Apelin receptor, with Rubredoxin insertion ; ligands: ZN ; X-RAY DIFFRACTION 2.700Å

e7e0lB4[B:1-52] Image Pymol Jmol Links: PDB, SCOP, CATH

Hydroxylamine reductase ; ligands: FE ; X-RAY DIFFRACTION 2.820Å

e7e0lK4[K:1-52] Image Pymol Jmol Links: PDB, SCOP, CATH

Hydroxylamine reductase ; ligands: FE ; X-RAY DIFFRACTION 2.820Å

e7e0lM4[M:1-52] Image Pymol Jmol Links: PDB, SCOP, CATH

Hydroxylamine reductase ; ligands: FE ; X-RAY DIFFRACTION 2.820Å

e1dx8A1[A:1-70] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

RUBREDOXIN ; ligands: ZN ; SOLUTION NMR

F: Acetone_carb_G

F: MCM_OB

F: zinc_ribbon_9

F: zinc_ribbon_6

F: TFIIS_C

F: Methyltransf_13

F: RUBY_RBDX

F: NrdR-like_N

F: Vps36-NZF-N

F: zf-CHC2

F: Churchill

F: Ribosomal_L40e

F: zf-Sec23_Sec24

F: PolC_DP2

F: BshC

F: GCM

F: tRNA-synt_1

F: Ribosomal_L32p

F: PriA_CRR

F: Thr_synth_N

F: DUF35_N

F: Ribosomal_L44

F: LysW-like_globular

F: tRNA-synt_1g

F: Ribosomal_L37e

F: SIR2

F: Nudix_N_2

F: tRNA-synt_1f

F: zf_PR_Knuckle

F: HVO_2753_ZBP

F: PADR1_Zn_ribbon

F: Spt4

F: FdhE

F: Ribosomal_L33

F: Tfb4

F: SoxD

F: PknG_rubred

F: HMBD

F: Elf1

F: RNA_POL_M_15KD

F: HypA

F: zf-NADH-PPase

F: TOP1_ZnF

F: Rep_fac-A_C

F: Thio2_N

F: zf-C4_Topoisom

F: Prim_Zn_Ribbon

F: DNA_RNApol_7kD

F: Ribosomal_L37ae

F: Nop10p

F: zinc_ribbon_4

F: ADK_lid

F: TF_Zn_Ribbon

F: Mcm10

F: RbpA

F: Ribosomal_S27

F: zf-RanBP

F: zf-ZPR1

F: Ribosomal_S27e

F: tRNA-synt_1e

F: MqsA_antitoxin

F: Topo_Zn_Ribbon

F: YjdM_Zn_Ribbon

F: zf-RING_7

F: Rubredoxin_2

F: Rpr2

F: Unmapped domains

Pseudo group of domains that do not map to PFam family profiles. Domains inside should not be considered as in one family.

T: Desulforedoxin

T: Hypothetical protein MTH1184

T: Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain

insertion in the CxxC motif

T: Hypothetical protein Ta0289-C

insertion in the CxxC motif

T: Zinc-nucleated domain of serine integrase

T: Casein kinase II beta subunit

T: Cytochrome c oxidase Subunit F

H: Zinc-binding domain in CopZ

H: YfgJ-like

H: CSL zinc finger

H: Nucleolar RNA-binding protein Nop10-like

H: NOB1 zinc finger-like

H: FlhC-like

H: Zn-binding domains of ADDBP

H: Zinc-binding domain of translation initiation factor 2 beta

H: Zinc finger in leader protease Nsp1alpha

H: Zinc finger domain of DNA polymerase-alpha

H: Zinc finger domain of DNA repair helicase RadD

H: Nicotinate phosphoribosyltransferase C-terminal domain-related

H: Mycobacterium tuberculosis Topoisomerase I C-terminal domain

H: Rubredoxin-like domain in leucyl-tRNA synthetase (LS1)

X: Zinc-binding domain in Junin virus envelope glycoprotein

X: FusB family Zn-binding domain

X: Zinc finger domain in hydrogenase maturation protein HypF

X: Ribosomal protein L36

X: Btk/CHORD zinc fingers

X: CHY zinc finger

X: Trm112p-like

X: beta-barrel domain in Capz

X: Zinc hairpin stack

X: HSP33 redox switch-like

X: Coronavirus NSP10-like

X: T-antigen specific domain-like

X: Late competence protein ComFB

X: RING/U-box-like

binds two zincs. one in the same way as rubredoxin, probably related to rubredoxin. the other in a similar way as glucocorticoid receptor

X: Zinc-binding domain of DENR

X: E3 ligase HOIP C-terminal domain

X: Avirulence protein AvrP123

X: E7 C-terminal domain-like

X: C4H2C2-type zinc finger

X: Glucocorticoid receptor-like

binds zinc with one beta-hairpin and one helix, the helix binds DNA

X: CRISPR RNA silencing complex Cmr2 subunit Zn-binding domain

X: Zn3Cys9 preSET domain-related

X: Metallothionein

X: Ribosomal protein bL28-related

X: Ribosomal protein L31p

X: His-Me finger endonucleases

X: CRISPR-associated endonuclease Cpf1 nuclease domain

X: CRISPR-associated endonuclease C2c1 C-terminal domain

X: Kazal-type serine protease inhibitors-like

X: Kringle-like

X: Snake toxin-like

X: Defensin-like

X: Rattusin, a novel defensin with intermolecular disulfides

X: Epidermal patterning factor-like protein 9

X: BPTI-like

X: Cystine-knot cytokines

X: beta-beta-alpha zinc fingers

X: Inhibitor of apoptosis (IAP) repeat

X: Viral leader polypeptide zinc finger

X: Zinc finger domain in TOPLESS related protein 2 (TPR2)

X: E6 C-terminal domain-like

X: Zinc finger domain in intron-associated endonuclease 1

X: I-superfamily conotoxin r11a

X: omega toxin-like

X: Huristasin-like

X: EGF-like

X: Sortilin C-terminal domain

X: Granulin repeat

X: Conotoxin phi-MiXXVIIA

X: DPY module

X: Neurotoxin III (ATX III)

X: Hairpin loop containing domain-like

X: Fibronectin type I module-like

X: GLA-domain

X: Invertebrate chitin-binding proteins

X: Midkine-related

X: CCHC-type 1 zinc finger

X: Toxic hairpin

X: gp76 helical domain

X: lybatide 2

X: Heparin-binding domain from vascular endothelial growth factor

X: Anaphylotoxins (complement system)

X: pheromone Ep-1

X: Crustacean Hyperglycemic Hormone (CHH)-like

X: Cytochrome c oxidase subunit h

X: Frizzled cysteine-rich domain-related

X: H-NS histone-like proteins, C-terminal domain

X: p8-MTCP1-related

X: Influenza A M2 transmembrane domain

X: AapA1 toxin, transmembrane helix

X: Tetraspanin transmembrane domain

X: Tetraspanin extracellular domain

X: Ada DNA repair protein, N-terminal domain (N-Ada 10)

X: Amb V allergen

X: Apical membrane antigen 1

X: B-box zinc-binding domain-like

X: Carboxypeptidase inhibitor

X: CCCH zinc finger

X: CCHHC domain

X: Cellulose docking domain, dockering

X: Cholecystokinin A receptor, N-domain

X: Cysteine-rich DNA binding domain, (DM domain)

X: Ferredoxin thioredoxin reductase (FTR), catalytic beta chain

X: HypD Fe-S cluster binding domain

X: Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit

X: HIV-1 VPU cytoplasmic domain

X: Hormone receptor domain (HRM, Pfam 02793)

X: Methylamine dehydrogenase, L chain

X: nigellin-1.1

X: Mollusk pheromone

X: Protozoan pheromone proteins

X: Necrosis inducing protein 1, NIP1

X: Lin12/Notch repeat

X: Pheromone ESP1

X: Pheromone ER-23

X: Somatomedin B domain

X: TSP type-3 repeat

X: TSP-1 type 1 repeat

X: Highly disulfide-linked beta sandwich region of p43

X: EMI domain

X: Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins

X: Type X cellulose binding domain, CBDX

X: Zinc domain conserved in yeast copper-regulated transcription factors

X: HCV NS5A domain I subdomains

X: Amino-terminal Zn-finger of Ube3a ligase (AZUL)

X: CXXC domain-like

X: PBZ domain

X: SCA7 zinc finger domain

X: Zinc binding domain of metalloprotease Spartan

X: Evasin-1

X: Elafin-like

X: Anosmin 1 N-terminal cysteine-rich domain

X: hypothetical protein NE1300

X: Bubble protein

X: Mini-collagen I, C-terminal domain

X: Fe-binding domain in prismane-like proteins

X: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit

X: Fe-S cluster binding domain in some xanthine oxidase family enzymes

X: CDGSH iron-sulfur domains

X: Multiheme cytochromes

X: Dihydroorotate dehydrogenase B PyrK subunit 2Fe-2S cluster-binding domain

X: Ca-binding domain in anthrax protective antigen

X: Excalibur domain of choline binding protein L

X: Microplusin

X: CopK

X: zinc-finger domain of Nanos

X: Regulator of transcription protein Rtr1

X: Protein P16

X: Protein P30

X: PSI AB box domain

X: N-terminal A Domain of voltage-gated Ca2+ channel beta4a subunit

X: Phytotoxic protein PcF

X: Antimicrobial peptide LCI

X: 2Fe-2S binding domain in CopZ

X: Scytovirin

X: CLIP domain

X: Diapausin

X: EAGR box containing domain in MG200

X: N-terminal domain of EpCAM

X: Cys-rich region of amnionless (AMN) extracellular domain

X: Npl4 zinc binding domain

X: VWF C8-3 module

extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes

special