Evolutionary classification of protein domain structures

alpha arraysalpha-helix arrays with mainly perpendicular helices

alpha bundlesalpha-helix bundles with mainly parallel helices

alpha superhelicesrepeating alpha-helix hairpins form a superhelix

alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain

alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix

beta barrelssingle beta-sheet folded upon itself to form a barrel

beta meanderssingle beta-sheet with mainly meander topology

beta sandwichestwo beta-sheets stacked together to form a sandwich

beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain

beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander

a+b two layersone alpha-helix layer and one beta-sheet layer

a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers

a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers

a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers

a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain

a/b barrelsrepeating beta-alpha units form a barrel

a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers

mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions

few secondary structure elementsstabilized by cofactors or disulfides

X: barrettide A

X: Leech antihemostatic protein

X: Plant proteinase inhibitors

X: Embryo surrounding factor (ESF) peptides

X: Type AII lantibiotic bovicin HJ50

X: PSCD domain of pleuralin-1

X: Sea anemone toxin k-like

X: Trefoil/Plexin domain-like

X: Variant surface glycoprotein MITAT 1.2, VSG 221, C-terminal domain

X: PMP inhibitors

X: Ectatomin/elicitin

X: Bowman-Birk inhibitor, BBI-like

X: DnaJ/Hsp40 cysteine-rich domain

X: P-domain of calnexin/calreticulin

X: Thyroglobulin type-1 domain

X: Shisa 3 N-terminal domain

X: TAZ domain

X: Zn-binding domain in DNA polymerase III subunits

X: N-terminal domain of helicase-loading protein DnaI

X: Tim10/DDP

X: Sec-C motif

X: Vanabin-like

X: Crambin-like

X: Blood coagulation inhibitor (disintegrin)

X: Insulin-like

X: Cellophane-induced 1 (cin1) repeats

X: Conotoxin im17a

X: Conotoxin F14

X: con-ikot-ikot toxin

X: TB module/8-cys domain

X: Phospholipase A2, PLA2

X: Zn2/Cys6 DNA-binding domain

X: HIPIP (high potential iron protein)

X: Ezh2 MCSS domain

X: C-P lyase subunit PhnJ C-terminal Zn-binding domain

X: Pre-mRNA-splicing factor BUD31

X: Protein-only RNase P Zn-binding domain

X: RelA zinc-finger domain

X: Rubredoxin-like

binds one zinc with two CxxC motifs on two beta-hairpins

H: Rubredoxin-related

T: Rubredoxin-related

F: Rubredoxin

F: Acetone_carb_G

F: MCM_OB

F: zinc_ribbon_9

F: zinc_ribbon_6

F: TFIIS_C

F: Methyltransf_13

F: RUBY_RBDX

F: NrdR-like_N

F: Vps36-NZF-N

F: zf-CHC2

F: Churchill

F: Ribosomal_L40e

F: zf-Sec23_Sec24

F: PolC_DP2

F: BshC

F: GCM

F: tRNA-synt_1

F: Ribosomal_L32p

F: PriA_CRR

F: Thr_synth_N

F: DUF35_N

F: Ribosomal_L44

Representatives:

e1vqo31[3:1-92] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S RIBOSOMAL PROTEIN L44E ; ligands: CD,CL,NA,SR ; X-RAY DIFFRACTION 2.2Å

e6sv4XP1[XP:2-106] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L42-A ; ELECTRON MICROSCOPY

e6sv4zP1[zP:2-106] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L42-A ; ELECTRON MICROSCOPY

e6y0gLo1[Lo:2-106] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L36a ; ligands: 3HE,ZN ; ELECTRON MICROSCOPY

e6y2lLo1[Lo:2-106] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L36a ; ligands: 3HE,ZN ; ELECTRON MICROSCOPY

e6y57Lo1[Lo:2-99] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L36a ; ligands: ZN ; ELECTRON MICROSCOPY

e6tb3AP1[AP:2-104] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L42-A ; ligands: ZN ; ELECTRON MICROSCOPY

e6tnuAP1[AP:2-104] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L42-A ; ligands: 3HE,ZN ; ELECTRON MICROSCOPY

e6y6xLo1[Lo:2-106] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L36a ; ligands: ZN ; ELECTRON MICROSCOPY

e6z6jLo1[Lo:2-106] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L42-A ; ligands: ZN ; ELECTRON MICROSCOPY

e6z6mLo1[Lo:2-106] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L36a ; ligands: ZN ; ELECTRON MICROSCOPY

e6zmeLo1[Lo:2-106] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L36a ; ligands: ZN ; ELECTRON MICROSCOPY

e6zmiLo1[Lo:2-106] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L36a ; ligands: ZN ; ELECTRON MICROSCOPY

e6skfBl1[Bl:1-93] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L44e ; ligands: ZN ; ELECTRON MICROSCOPY

e6lqmW1[W:2-103] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L36a ; ELECTRON MICROSCOPY

e6lsrW1[W:2-106] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L36a ; ELECTRON MICROSCOPY

e6lssW1[W:2-102] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L36a ; ELECTRON MICROSCOPY

e6lu8W1[W:2-104] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L36a ; ELECTRON MICROSCOPY

e6w6lp1[p:2-100] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L36a ; ligands: ZN ; ELECTRON MICROSCOPY

e6z6lLo1[Lo:2-104] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L36a ; ligands: ZN ; ELECTRON MICROSCOPY

e6z6nLo1[Lo:2-106] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L36a ; ligands: ZN ; ELECTRON MICROSCOPY

e6zm7Lo1[Lo:2-106] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L36a ; ligands: ZN ; ELECTRON MICROSCOPY

e6zmoLo1[Lo:2-106] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L36a ; ligands: MG,ZN ; ELECTRON MICROSCOPY

e6xiqo1[o:2-106] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L42-A ; ligands: ZN ; ELECTRON MICROSCOPY

e6xiro1[o:2-106] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L42-A ; ligands: ZN ; ELECTRON MICROSCOPY

e6z6kLo1[Lo:2-106] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L42-A ; ligands: ZN ; ELECTRON MICROSCOPY

e6skgBl1[Bl:1-93] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L44e ; ligands: ZN ; ELECTRON MICROSCOPY

e6th6Bl1[Bl:1-93] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L44e ; ligands: ZN ; ELECTRON MICROSCOPY

e6swam1[m:2-106] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Ribosomal protein L36A ; ligands: ZN ; ELECTRON MICROSCOPY

e6xa1Lo1[Lo:2-106] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L36a ; ligands: ZN ; ELECTRON MICROSCOPY

e6oigo1[o:2-106] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L42-A ; ELECTRON MICROSCOPY

e6wooo1[o:2-102] Image Pymol Jmol Links: PDB, SCOP, CATH

eL42 ; ligands: ZN ; ELECTRON MICROSCOPY

e6zu5LOO1[LOO:10-100] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

eL42 ; ligands: ZN ; ELECTRON MICROSCOPY

e6zj3L41[L4:2-98] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Ribosomal protein eL43 ; ligands: ZN ; ELECTRON MICROSCOPY

e7a01F21[F2:2-105] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

eL42 ; ligands: ZN ; ELECTRON MICROSCOPY

e7bhpLo1[Lo:2-106] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L36a ; ligands: ZN ; ELECTRON MICROSCOPY

e6zvkF21[F2:2-105] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

eL42 ; ligands: ZN ; ELECTRON MICROSCOPY

e7b7dLk1[Lk:2-104] Image Pymol Jmol Links: PDB, SCOP, CATH

60S ribosomal protein L42-A ; ELECTRON MICROSCOPY

e7nrdLq1[Lq:2-104] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L42-A ; ELECTRON MICROSCOPY

e7nrcLq1[Lq:2-104] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L42-A ; ELECTRON MICROSCOPY

e7azyQ1[Q:2-106] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L42-A ; ELECTRON MICROSCOPY

e7o7yBo1[Bo:2-106] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

eL42 ; ligands: UNX,ZN ; ELECTRON MICROSCOPY

e7nfxo1[o:2-105] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

eL42 ; ligands: ZN ; ELECTRON MICROSCOPY

e7nwgo31[o3:2-105] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

eL42 ; ligands: ZN ; ELECTRON MICROSCOPY

e7nwho1[o:2-105] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

eL42 ; ligands: MG,ZN ; ELECTRON MICROSCOPY

e7nwio1[o:2-105] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

LOW QUALITY PROTEIN: 60S ribosomal protein L36a ; ligands: ZN ; ELECTRON MICROSCOPY

e7o7zBo1[Bo:2-106] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

eL42 ; ligands: UNX,ZN ; ELECTRON MICROSCOPY

e7o80Bo1[Bo:2-106] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

eL42 ; ligands: UNX,ZN ; ELECTRON MICROSCOPY

e7o81Bo1[Bo:2-106] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

eL42 ; ligands: UNX,ZN ; ELECTRON MICROSCOPY

e7obro1[o:2-105] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

eL42 ; ligands: ZN ; ELECTRON MICROSCOPY

e6xu6Co1[Co:1-104] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

TA01007p ; ELECTRON MICROSCOPY

e7mdzo1[o:2-105] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

eL42 ; ligands: Z2V,ZN ; ELECTRON MICROSCOPY

e6xu7Co1[Co:1-104] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

TA01007p ; ELECTRON MICROSCOPY

e6xu8Co1[Co:1-104] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

TA01007p ; ELECTRON MICROSCOPY

e7ls1i21[i2:2-104] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L36a ; ligands: ZN ; ELECTRON MICROSCOPY

e7ls2i21[i2:2-104] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L36a ; ligands: ZN ; ELECTRON MICROSCOPY

e7osaeL421[eL42:2-106] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

BJ4_G0001880.mRNA.1.CDS.1 ; ligands: MG,ZN ; X-RAY DIFFRACTION 3.0Å

e7osmeL421[eL42:2-103] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

BJ4_G0001880.mRNA.1.CDS.1 ; ligands: MG,ZN ; X-RAY DIFFRACTION 3.0Å

e7r81q11[q1:2-106] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L44 ; ligands: 3HE,MG ; ELECTRON MICROSCOPY

e7rr5Lo1[Lo:2-104] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L42-A ; ligands: ASP,ZN ; ELECTRON MICROSCOPY

e7cpuLo1[Lo:2-104] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L36a ; ligands: ZN ; ELECTRON MICROSCOPY

e7olcLo1[Lo:2-105] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L44-like protein ; ligands: MG,ZN ; ELECTRON MICROSCOPY

e7cpvLo1[Lo:2-104] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L36a ; ligands: ZN ; ELECTRON MICROSCOPY

e7oldLo1[Lo:2-105] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L44-like protein ; ligands: ZN ; ELECTRON MICROSCOPY

e7qwro1[o:2-105] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

eL42 ; ligands: ZN ; ELECTRON MICROSCOPY

e7qwqo1[o:2-105] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

eL42 ; ligands: ZN ; ELECTRON MICROSCOPY

e7qepP21[P2:2-98] Image Pymol Jmol Links: PDB, SCOP, CATH DOI

60S ribosomal protein L44 ; ligands: ZN ; ELECTRON MICROSCOPY

e7qiwp1[p:2-100] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein eL42 ; ligands: K,MG,SPM,ZN ; ELECTRON MICROSCOPY

e7qizp1[p:2-100] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein eL42 ; ligands: K,MG,SPM,ZN ; ELECTRON MICROSCOPY

e7pzyAP1[AP:2-104] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Ribosomal 60S subunit protein L42A ; ligands: MG,ZN ; ELECTRON MICROSCOPY

e7q08AP1[AP:2-104] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Ribosomal 60S subunit protein L42A ; ligands: 3HE,ZN ; ELECTRON MICROSCOPY

e7q0fAP1[AP:2-104] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Ribosomal 60S subunit protein L42A ; ligands: 3K5,ZN ; ELECTRON MICROSCOPY

e7q0pAP1[AP:2-104] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Ribosomal 60S subunit protein L42A ; ligands: ZN ; ELECTRON MICROSCOPY

e7q0rAP1[AP:2-104] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Ribosomal 60S subunit protein L42A ; ligands: ZN ; ELECTRON MICROSCOPY

e7mpiAo1[Ao:2-106] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L42-A ; ligands: MG,ZN ; ELECTRON MICROSCOPY

e7mpjAo1[Ao:2-106] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L42-A ; ligands: MG,ZN ; ELECTRON MICROSCOPY

e7n8bAo1[Ao:2-106] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L42-A ; ligands: 3HE,ZN ; ELECTRON MICROSCOPY

e7tooAL421[AL42:2-106] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L42-A ; ligands: ZN ; ELECTRON MICROSCOPY

e7topAL421[AL42:2-106] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L42-A ; ligands: ZN ; ELECTRON MICROSCOPY

e7z34q1[q:2-106] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L42-A ; ELECTRON MICROSCOPY

e7qwso1[o:2-105] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

eL42 ; ligands: ZN ; ELECTRON MICROSCOPY

e7toqAL421[AL42:2-105] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

eL42 ; ligands: ZN ; ELECTRON MICROSCOPY

e7torAL421[AL42:2-105] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

eL42 ; ligands: ZN ; ELECTRON MICROSCOPY

e7ucjo1[o:2-104] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L36a ; ligands: ZN ; ELECTRON MICROSCOPY

e7ucko1[o:2-104] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L36a ; ligands: ZN ; ELECTRON MICROSCOPY

e7f5sLo1[Lo:2-104] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L36a ; ligands: ZN ; ELECTRON MICROSCOPY

e7oyao11[o1:2-103] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L36a ; ligands: ZN ; ELECTRON MICROSCOPY

e7oybo11[o1:2-103] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L36a ; ligands: MG,ZN ; ELECTRON MICROSCOPY

e7oyco11[o1:2-103] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

MGC85428 protein ; ligands: ZN ; ELECTRON MICROSCOPY

e7oydo1[o:2-103] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L36a-like ; ligands: ZN ; ELECTRON MICROSCOPY

e7zjxLq1[Lq:2-106] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein eL42 ; ligands: ZN ; ELECTRON MICROSCOPY

e7pwgo1[o:2-95] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Ribosomal protein L44 ; ligands: K,MG ; ELECTRON MICROSCOPY

e7pwoo21[o2:2-95] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Ribosomal protein L44 ; ligands: K,MG ; ELECTRON MICROSCOPY

e7zw0Lr1[Lr:2-104] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L42-A ; ligands: MG,ZN ; ELECTRON MICROSCOPY

e7ow7i1[i:2-98] Image Pymol Jmol Links: PDB, SCOP, CATH

60S ribosomal protein L36a ; ligands: K,MG,ZN ; ELECTRON MICROSCOPY

e7qvpLo1[Lo:2-106] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L36a ; ELECTRON MICROSCOPY

e7qvpMo1[Mo:2-99] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L36a ; ELECTRON MICROSCOPY

e8aafb1[b:2-104] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L42-A ; ligands: ZN ; ELECTRON MICROSCOPY

e8agtb1[b:2-104] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L42-A ; ligands: ZN ; ELECTRON MICROSCOPY

e8agub1[b:2-104] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L42-A ; ligands: ZN ; ELECTRON MICROSCOPY

e8agvb1[b:2-104] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L42-A ; ligands: ZN ; ELECTRON MICROSCOPY

e8agwb1[b:2-104] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L42-A ; ligands: ZN ; ELECTRON MICROSCOPY

e8agxb1[b:2-104] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L42-A ; ligands: ZN ; ELECTRON MICROSCOPY

e8agzb1[b:2-104] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L42-A ; ligands: ZN ; ELECTRON MICROSCOPY

e8bipLo1[Lo:2-104] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L42-A ; ligands: MG,ZN ; ELECTRON MICROSCOPY

e8bjqLo1[Lo:2-104] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L42-A ; ligands: MG,ZN ; ELECTRON MICROSCOPY

e7zpqBn1[Bn:2-104] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L42-A ; ligands: ZN ; ELECTRON MICROSCOPY

e7zrsBn1[Bn:2-104] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L42-A ; ligands: ZN ; ELECTRON MICROSCOPY

e7zs5BA1[BA:2-106] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L42-A ; ELECTRON MICROSCOPY

e7zuwBn1[Bn:2-104] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L42-A ; ligands: ZN ; ELECTRON MICROSCOPY

e7zuxEn1[En:2-104] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L42-A ; ligands: ZN ; ELECTRON MICROSCOPY

e8eugo1[o:2-98] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L42 ; ELECTRON MICROSCOPY

e8euio1[o:2-99] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L42 ; ELECTRON MICROSCOPY

e8a3di1[i:2-104] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L36a ; ligands: K,ZN ; ELECTRON MICROSCOPY

e8b5lo1[o:2-104] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L36a-like ; ligands: ZN ; ELECTRON MICROSCOPY

e8b6co1[o:2-104] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L36a-like ; ligands: ZN ; ELECTRON MICROSCOPY

e7qcaLOO1[LOO:2-101] Image Pymol Jmol Links: PDB, SCOP, CATH

60S ribosomal protein L44 ; ligands: MG,ZN ; ELECTRON MICROSCOPY

e7qggp1[p:2-106] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Ribosomal protein L36a ; ligands: ZN ; ELECTRON MICROSCOPY

e7qjhLOO1[LOO:2-101] Image Pymol Jmol Links: PDB, SCOP, CATH

; ligands: ZN

e7qjhKOO1[KOO:2-101] Image Pymol Jmol Links: PDB, SCOP, CATH

; ligands: ZN

e7tm3o1[o:2-105] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

eL42 ; ligands: MG,ZN ; ELECTRON MICROSCOPY

e7tuto1[o:2-105] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

eL42 ; ligands: ZN ; ELECTRON MICROSCOPY

e7zjwLq1[Lq:2-106] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein eL42 ; ligands: SER,ZN ; ELECTRON MICROSCOPY

e7z3nLo1[Lo:2-105] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L44-like protein ; ligands: ZN ; ELECTRON MICROSCOPY

e7z3oLo1[Lo:2-105] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L44-like protein ; ligands: MG,ZN ; ELECTRON MICROSCOPY

e8br8Lp1[Lp:2-94] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Ribosomal protein L44 ; ELECTRON MICROSCOPY

e8brmLp1[Lp:2-94] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Ribosomal protein L44 ; ELECTRON MICROSCOPY

e8bsiLp1[Lp:2-93] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Ribosomal protein L44 ; ELECTRON MICROSCOPY

e8btdLp1[Lp:2-94] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Ribosomal protein L44 ; ELECTRON MICROSCOPY

e8btrLp1[Lp:2-94] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Ribosomal protein L44 ; ELECTRON MICROSCOPY

e8br3LOO1[LOO:2-101] Image Pymol Jmol Links: PDB, SCOP, CATH

; ligands: ZN

e8bsjLp1[Lp:2-92] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Ribosomal protein L44 ; ELECTRON MICROSCOPY

e8btkBo1[Bo:2-106] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

eL42 ; ligands: MG,ZN ; ELECTRON MICROSCOPY

e8g5yLo1[Lo:2-106] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L36a ; ligands: 3H3,MET,MG,ZN ; ELECTRON MICROSCOPY

e8g5zLo1[Lo:2-106] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Ribosomal protein L36a ; ligands: 3H3,MET,MG,PHE,ZN ; ELECTRON MICROSCOPY

e8g60Lo1[Lo:2-105] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

eL42 ; ligands: 3H3,MET,MG,PHE,ZN ; ELECTRON MICROSCOPY

e8g61Lo1[Lo:2-105] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L36a ; ligands: 3H3,MET,MG,ZN ; ELECTRON MICROSCOPY

e8g6jLo1[Lo:2-106] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L36a ; ligands: 3HE,MET,PHE,ZN ; ELECTRON MICROSCOPY

e8glpLo1[Lo:2-106] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L36a ; ligands: 3H3,MET,MG,ZN ; ELECTRON MICROSCOPY

e7xnxLo1[Lo:2-104] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L36a ; ligands: MG,ZN ; ELECTRON MICROSCOPY

e7xnyLo1[Lo:2-104] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L36a ; ligands: MG,ZN ; ELECTRON MICROSCOPY

e8bqdAP1[AP:2-104] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L42-A ; ligands: ZN ; ELECTRON MICROSCOPY

e8bqxAP1[AP:2-104] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L42-A ; ligands: ZN ; ELECTRON MICROSCOPY

e8hfrmS1[mS:2-94] Image Pymol Jmol Links: PDB, SCOP, CATH

60S ribosomal protein L42-A ; ELECTRON MICROSCOPY

e8azwZ1[Z:2-99] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ligands: K,MG,SPM,ZN ; ELECTRON MICROSCOPY

e8b2lZ31[Z3:2-99] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L44 ; ligands: K,MG,SPM,ZN ; ELECTRON MICROSCOPY

e8q5iAP1[AP:2-104] Image Pymol Jmol Links: PDB, SCOP, CATH DOI

; ligands: MG,ZN ; ELECTRON MICROSCOPY

e8p5dLOO1[LOO:2-101] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ligands: ZN ; ELECTRON MICROSCOPY

e8bpon21[n2:2-105] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ligands: ZN ; ELECTRON MICROSCOPY

e8fl6LV1[LV:2-105] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ligands: ZN ; ELECTRON MICROSCOPY

e8p2kBo1[Bo:2-106] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

eL42 ; ligands: N,UNX,ZN ; ELECTRON MICROSCOPY

e8idtW1[W:2-102] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ELECTRON MICROSCOPY

e8bhfb11[b1:2-105] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ligands: ZN ; ELECTRON MICROSCOPY

e8eubAo1[Ao:2-106] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ligands: MG,ZN ; ELECTRON MICROSCOPY

e8ccsa1[a:2-103] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

60S ribosomal protein L42-A ; ligands: K,MG,ZN ; ELECTRON MICROSCOPY

e8hkuL44E1[L44E:1-92] Image Pymol Jmol Links: PDB, SCOP, CATH

; ELECTRON MICROSCOPY

e8hkyL44E1[L44E:1-92] Image Pymol Jmol Links: PDB, SCOP, CATH

; ELECTRON MICROSCOPY

e8hl2L44E1[L44E:1-92] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L44e ; ELECTRON MICROSCOPY

e8hl5L44E1[L44E:1-92] Image Pymol Jmol Links: PDB, SCOP, CATH

; ELECTRON MICROSCOPY

e8a98p1[p:2-97] Image Pymol Jmol Links: PDB, SCOP, CATH

Putative 60S ribosomal protein L44 ; ELECTRON MICROSCOPY

F: LysW-like_globular

F: tRNA-synt_1g

F: Ribosomal_L37e

F: SIR2

F: Nudix_N_2

F: tRNA-synt_1f

F: zf_PR_Knuckle

F: HVO_2753_ZBP

F: PADR1_Zn_ribbon

F: Spt4

F: FdhE

F: Ribosomal_L33

F: Tfb4

F: SoxD

F: PknG_rubred

F: HMBD

F: Elf1

F: RNA_POL_M_15KD

F: HypA

F: zf-NADH-PPase

F: TOP1_ZnF

F: Rep_fac-A_C

F: Thio2_N

F: zf-C4_Topoisom

F: Prim_Zn_Ribbon

F: DNA_RNApol_7kD

F: Ribosomal_L37ae

F: Nop10p

F: zinc_ribbon_4

F: ADK_lid

F: TF_Zn_Ribbon

F: Mcm10

F: RbpA

F: Ribosomal_S27

F: zf-RanBP

F: zf-ZPR1

F: Ribosomal_S27e

F: tRNA-synt_1e

F: MqsA_antitoxin

F: Topo_Zn_Ribbon

F: YjdM_Zn_Ribbon

F: zf-RING_7

F: Rubredoxin_2

F: Rpr2

F: Unmapped domains

Pseudo group of domains that do not map to PFam family profiles. Domains inside should not be considered as in one family.

T: Desulforedoxin

T: Hypothetical protein MTH1184

T: Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain

insertion in the CxxC motif

T: Hypothetical protein Ta0289-C

insertion in the CxxC motif

T: Zinc-nucleated domain of serine integrase

T: Casein kinase II beta subunit

T: Cytochrome c oxidase Subunit F

H: Zinc-binding domain in CopZ

H: YfgJ-like

H: CSL zinc finger

H: Nucleolar RNA-binding protein Nop10-like

H: NOB1 zinc finger-like

H: FlhC-like

H: Zn-binding domains of ADDBP

H: Zinc-binding domain of translation initiation factor 2 beta

H: Zinc finger in leader protease Nsp1alpha

H: Zinc finger domain of DNA polymerase-alpha

H: Zinc finger domain of DNA repair helicase RadD

H: Nicotinate phosphoribosyltransferase C-terminal domain-related

H: Mycobacterium tuberculosis Topoisomerase I C-terminal domain

H: Rubredoxin-like domain in leucyl-tRNA synthetase (LS1)

X: Zinc-binding domain in Junin virus envelope glycoprotein

X: FusB family Zn-binding domain

X: Zinc finger domain in hydrogenase maturation protein HypF

X: Ribosomal protein L36

X: Btk/CHORD zinc fingers

X: CHY zinc finger

X: Trm112p-like

X: beta-barrel domain in Capz

X: Zinc hairpin stack

X: HSP33 redox switch-like

X: Coronavirus NSP10-like

X: T-antigen specific domain-like

X: Late competence protein ComFB

X: RING/U-box-like

binds two zincs. one in the same way as rubredoxin, probably related to rubredoxin. the other in a similar way as glucocorticoid receptor

X: Zinc-binding domain of DENR

X: E3 ligase HOIP C-terminal domain

X: Avirulence protein AvrP123

X: E7 C-terminal domain-like

X: C4H2C2-type zinc finger

X: Glucocorticoid receptor-like

binds zinc with one beta-hairpin and one helix, the helix binds DNA

X: CRISPR RNA silencing complex Cmr2 subunit Zn-binding domain

X: Zn3Cys9 preSET domain-related

X: Metallothionein

X: Ribosomal protein bL28-related

X: Ribosomal protein L31p

X: His-Me finger endonucleases

X: CRISPR-associated endonuclease Cpf1 nuclease domain

X: CRISPR-associated endonuclease C2c1 C-terminal domain

X: Kazal-type serine protease inhibitors-like

X: Kringle-like

X: Snake toxin-like

X: Defensin-like

X: Rattusin, a novel defensin with intermolecular disulfides

X: Epidermal patterning factor-like protein 9

X: BPTI-like

X: Cystine-knot cytokines

X: beta-beta-alpha zinc fingers

X: Inhibitor of apoptosis (IAP) repeat

X: Viral leader polypeptide zinc finger

X: Zinc finger domain in TOPLESS related protein 2 (TPR2)

X: E6 C-terminal domain-like

X: Zinc finger domain in intron-associated endonuclease 1

X: I-superfamily conotoxin r11a

X: omega toxin-like

X: Huristasin-like

X: EGF-like

X: Sortilin C-terminal domain

X: Granulin repeat

X: Conotoxin phi-MiXXVIIA

X: DPY module

X: Neurotoxin III (ATX III)

X: Hairpin loop containing domain-like

X: Fibronectin type I module-like

X: GLA-domain

X: Invertebrate chitin-binding proteins

X: Midkine-related

X: CCHC-type 1 zinc finger

X: Toxic hairpin

X: gp76 helical domain

X: lybatide 2

X: Heparin-binding domain from vascular endothelial growth factor

X: Anaphylotoxins (complement system)

X: pheromone Ep-1

X: Crustacean Hyperglycemic Hormone (CHH)-like

X: Cytochrome c oxidase subunit h

X: Frizzled cysteine-rich domain-related

X: H-NS histone-like proteins, C-terminal domain

X: p8-MTCP1-related

X: Influenza A M2 transmembrane domain

X: AapA1 toxin, transmembrane helix

X: Tetraspanin transmembrane domain

X: Tetraspanin extracellular domain

X: Ada DNA repair protein, N-terminal domain (N-Ada 10)

X: Amb V allergen

X: Apical membrane antigen 1

X: B-box zinc-binding domain-like

X: Carboxypeptidase inhibitor

X: CCCH zinc finger

X: CCHHC domain

X: Cellulose docking domain, dockering

X: Cholecystokinin A receptor, N-domain

X: Cysteine-rich DNA binding domain, (DM domain)

X: Ferredoxin thioredoxin reductase (FTR), catalytic beta chain

X: HypD Fe-S cluster binding domain

X: Fe-S cluster binding domain in carbon monoxide dehydrogenase corrinoid/iron-sulfur protein gamma subunit

X: HIV-1 VPU cytoplasmic domain

X: Hormone receptor domain (HRM, Pfam 02793)

X: Methylamine dehydrogenase, L chain

X: nigellin-1.1

X: Mollusk pheromone

X: Protozoan pheromone proteins

X: Necrosis inducing protein 1, NIP1

X: Lin12/Notch repeat

X: Pheromone ESP1

X: Pheromone ER-23

X: Somatomedin B domain

X: TSP type-3 repeat

X: TSP-1 type 1 repeat

X: Highly disulfide-linked beta sandwich region of p43

X: EMI domain

X: Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins

X: Type X cellulose binding domain, CBDX

X: Zinc domain conserved in yeast copper-regulated transcription factors

X: HCV NS5A domain I subdomains

X: Amino-terminal Zn-finger of Ube3a ligase (AZUL)

X: CXXC domain-like

X: PBZ domain

X: SCA7 zinc finger domain

X: Zinc binding domain of metalloprotease Spartan

X: Evasin-1

X: Elafin-like

X: Anosmin 1 N-terminal cysteine-rich domain

X: hypothetical protein NE1300

X: Bubble protein

X: Mini-collagen I, C-terminal domain

X: Fe-binding domain in prismane-like proteins

X: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit

X: Fe-S cluster binding domain in some xanthine oxidase family enzymes

X: CDGSH iron-sulfur domains

X: Multiheme cytochromes

X: Dihydroorotate dehydrogenase B PyrK subunit 2Fe-2S cluster-binding domain

X: Ca-binding domain in anthrax protective antigen

X: Excalibur domain of choline binding protein L

X: Microplusin

X: CopK

X: zinc-finger domain of Nanos

X: Regulator of transcription protein Rtr1

X: Protein P16

X: Protein P30

X: PSI AB box domain

X: N-terminal A Domain of voltage-gated Ca2+ channel beta4a subunit

X: Phytotoxic protein PcF

X: Antimicrobial peptide LCI

X: 2Fe-2S binding domain in CopZ

X: Scytovirin

X: CLIP domain

X: Diapausin

X: EAGR box containing domain in MG200

X: N-terminal domain of EpCAM

X: Cys-rich region of amnionless (AMN) extracellular domain

X: Npl4 zinc binding domain

X: VWF C8-3 module

extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes

special