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X - Possible homology level

H - Homology level

T - Topology level

F - Family level

* - Provisional representative


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Evolutionary classification of protein domain structures

alpha arraysalpha-helix arrays with mainly perpendicular helices

alpha bundlesalpha-helix bundles with mainly parallel helices

alpha superhelicesrepeating alpha-helix hairpins form a superhelix

alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain

alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix

beta barrelssingle beta-sheet folded upon itself to form a barrel

beta meanderssingle beta-sheet with mainly meander topology

beta sandwichestwo beta-sheets stacked together to form a sandwich

X: jelly-roll
H: Nucleoplasmin-like/VP (viral coat and capsid proteins)
T: Nucleoplasmin-like/VP (viral coat and capsid proteins)
F: Polyoma_coat

PF00718 CL0055

Representatives:

e1vpsA1[A:32-316] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

POLYOMAVIRUS VP1 PENTAMER ; X-RAY DIFFRACTION 1.9Å

e6hkuI1[I:32-303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: GOL,SIA ; X-RAY DIFFRACTION 1.98Å

e6hkuJ1[J:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: SIA ; X-RAY DIFFRACTION 1.98Å

e6hkvA1[A:32-303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: GXB ; X-RAY DIFFRACTION 1.75Å

e6hkvB1[B:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: GXB ; X-RAY DIFFRACTION 1.75Å

e6hkvC1[C:32-303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: CL,GXB,MG ; X-RAY DIFFRACTION 1.75Å

e6hkvD1[D:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: GXB,MG ; X-RAY DIFFRACTION 1.75Å

e6hkvE1[E:33-303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: GOL,GXB ; X-RAY DIFFRACTION 1.75Å

e6hkvF1[F:32-303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: GXB,MG ; X-RAY DIFFRACTION 1.75Å

e6hkvG1[G:33-303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: GXB,MG ; X-RAY DIFFRACTION 1.75Å

e6hkvH1[H:33-303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: GXB ; X-RAY DIFFRACTION 1.75Å

e6hkvI1[I:32-303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: GXB ; X-RAY DIFFRACTION 1.75Å

e6hkvJ1[J:32-302] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: GXB ; X-RAY DIFFRACTION 1.75Å

e6y5zBBB1[BBB:29-298] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: GOL ; X-RAY DIFFRACTION 1.549Å

e6y5zEEE1[EEE:29-298] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: GOL ; X-RAY DIFFRACTION 1.549Å

e6y5zAAA1[AAA:29-299] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: GOL ; X-RAY DIFFRACTION 1.549Å

e6y5zCCC1[CCC:30-298] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: GOL ; X-RAY DIFFRACTION 1.549Å

e6y60AAA1[AAA:40-299] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: PO4,SIA ; X-RAY DIFFRACTION 1.798Å

e6y60BBB1[BBB:40-299] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: PO4,SIA ; X-RAY DIFFRACTION 1.798Å

e6y60CCC1[CCC:41-298] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: PO4,SIA ; X-RAY DIFFRACTION 1.798Å

e6y60DDD1[DDD:41-299] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: PO4,SIA ; X-RAY DIFFRACTION 1.798Å

e6y60EEE1[EEE:40-299] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: PO4,SIA ; X-RAY DIFFRACTION 1.798Å

e6y60FFF1[FFF:41-299] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: PO4,SIA ; X-RAY DIFFRACTION 1.798Å

e6y60GGG1[GGG:41-298] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: PO4,SIA ; X-RAY DIFFRACTION 1.798Å

e6y60HHH1[HHH:41-298] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: PO4,SIA ; X-RAY DIFFRACTION 1.798Å

e6y60III1[III:41-298] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: PO4,SIA ; X-RAY DIFFRACTION 1.798Å

e6y60JJJ1[JJJ:40-299] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: PO4,SIA ; X-RAY DIFFRACTION 1.798Å

e6y5zDDD1[DDD:28-299] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: GOL ; X-RAY DIFFRACTION 1.549Å

e6y67AAA1[AAA:23-291] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: CL ; X-RAY DIFFRACTION 2.618Å

e6y67PPP1[PPP:23-291] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: CL ; X-RAY DIFFRACTION 2.618Å

e6y6aP1[P:23-291] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: SIA ; X-RAY DIFFRACTION 2.65Å

e6y6aR1[R:23-291] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: SIA ; X-RAY DIFFRACTION 2.65Å

e6y67BBB1[BBB:22-291] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: CL ; X-RAY DIFFRACTION 2.618Å

e6y67CCC1[CCC:22-291] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: CL ; X-RAY DIFFRACTION 2.618Å

e6y67DDD1[DDD:22-291] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; X-RAY DIFFRACTION 2.618Å

e6y67EEE1[EEE:22-291] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: CL ; X-RAY DIFFRACTION 2.618Å

e6y67FFF1[FFF:22-291] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: CL ; X-RAY DIFFRACTION 2.618Å

e6y67HHH1[HHH:22-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: CL ; X-RAY DIFFRACTION 2.618Å

e6y67III1[III:22-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: CL ; X-RAY DIFFRACTION 2.618Å

e6y67JJJ1[JJJ:22-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: CL ; X-RAY DIFFRACTION 2.618Å

e6y67OOO1[OOO:22-291] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: CL ; X-RAY DIFFRACTION 2.618Å

e6y67QQQ1[QQQ:22-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: CL ; X-RAY DIFFRACTION 2.618Å

e6y67RRR1[RRR:22-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: CL ; X-RAY DIFFRACTION 2.618Å

e6y67TTT1[TTT:22-291] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; X-RAY DIFFRACTION 2.618Å

e6y67YYY1[YYY:22-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: CL ; X-RAY DIFFRACTION 2.618Å

e6y67ZZZ1[ZZZ:22-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; X-RAY DIFFRACTION 2.618Å

e6y6aE1[E:22-291] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: SIA ; X-RAY DIFFRACTION 2.65Å

e6y6aM1[M:22-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: SIA ; X-RAY DIFFRACTION 2.65Å

e6y6aO1[O:22-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: SIA ; X-RAY DIFFRACTION 2.65Å

e6y6aT1[T:22-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: SIA ; X-RAY DIFFRACTION 2.65Å

e6y6ag1[g:22-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; X-RAY DIFFRACTION 2.65Å

e6y5xB1[B:49-322] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: GOL,MG ; X-RAY DIFFRACTION 2.30Å

e6y5xC1[C:49-321] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: GOL,MG ; X-RAY DIFFRACTION 2.30Å

e6y5xD1[D:38-322] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: GOL,MG ; X-RAY DIFFRACTION 2.30Å

e6y5xG1[G:37-322] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: GOL,MG ; X-RAY DIFFRACTION 2.30Å

e6y65FFF1[FFF:19-286] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: CL,EDO,IMD ; X-RAY DIFFRACTION 1.45Å

e6y65GGG1[GGG:20-286] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: CL,EDO,IMD ; X-RAY DIFFRACTION 1.45Å

e6y65HHH1[HHH:19-286] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: CL,EDO,IMD ; X-RAY DIFFRACTION 1.45Å

e6y65III1[III:20-286] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: CL,EDO,IMD ; X-RAY DIFFRACTION 1.45Å

e6y66CCC1[CCC:20-286] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: EDO,IMD,MNA ; X-RAY DIFFRACTION 1.95Å

e6y66GGG1[GGG:19-286] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: EDO,IMD,MNA ; X-RAY DIFFRACTION 1.95Å

e6y66III1[III:20-286] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: EDO,IMD,MNA ; X-RAY DIFFRACTION 1.95Å

e6y66JJJ1[JJJ:19-286] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: EDO,IMD,MNA ; X-RAY DIFFRACTION 1.95Å

e6y5xF1[F:38-321] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: GOL,MG ; X-RAY DIFFRACTION 2.30Å

e6y5xE1[E:48-321] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: GOL,MG ; X-RAY DIFFRACTION 2.30Å

e6y5xH1[H:48-321] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: GOL,MG ; X-RAY DIFFRACTION 2.30Å

e6y5xI1[I:48-321] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: GOL,MG ; X-RAY DIFFRACTION 2.30Å

e6y5xJ1[J:48-321] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: GOL,MG ; X-RAY DIFFRACTION 2.30Å

e6y5xA1[A:48-322] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: GOL,MG ; X-RAY DIFFRACTION 2.30Å

e6y61BBB1[BBB:22-291] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: GOL ; X-RAY DIFFRACTION 2.45Å

e6y61DDD1[DDD:22-291] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: GOL ; X-RAY DIFFRACTION 2.45Å

e6y61EEE1[EEE:22-291] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: GOL ; X-RAY DIFFRACTION 2.45Å

e6y61FFF1[FFF:22-291] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: GOL ; X-RAY DIFFRACTION 2.45Å

e6y61GGG1[GGG:24-292] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: GOL ; X-RAY DIFFRACTION 2.45Å

e6y61HHH1[HHH:22-291] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: GOL ; X-RAY DIFFRACTION 2.45Å

e6y61III1[III:22-291] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: GOL ; X-RAY DIFFRACTION 2.45Å

e6y63AAA1[AAA:34-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: MG,MPD,SIA ; X-RAY DIFFRACTION 1.651Å

e6y63BBB1[BBB:34-289] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: MG,MPD,SIA ; X-RAY DIFFRACTION 1.651Å

e6y63CCC1[CCC:34-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: MG,MPD ; X-RAY DIFFRACTION 1.651Å

e6y63DDD1[DDD:33-289] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: MG,MPD,SIA ; X-RAY DIFFRACTION 1.651Å

e6y63EEE1[EEE:34-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: MG,MPD,SIA ; X-RAY DIFFRACTION 1.651Å

e6y63FFF1[FFF:34-289] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: MG,MPD,SIA ; X-RAY DIFFRACTION 1.651Å

e6y63GGG1[GGG:34-289] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: MG,MPD,SIA ; X-RAY DIFFRACTION 1.651Å

e6y63III1[III:33-289] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: MG,MPD,SIA ; X-RAY DIFFRACTION 1.651Å

e6y64A1[A:34-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: EDO,GOL,MG,SIA ; X-RAY DIFFRACTION 1.6Å

e6y64B1[B:34-289] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: EDO,GOL,MG,SIA ; X-RAY DIFFRACTION 1.6Å

e6y64C1[C:34-291] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: EDO,MG,SIA ; X-RAY DIFFRACTION 1.6Å

e6y64D1[D:34-289] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: EDO,GOL,MG,SIA ; X-RAY DIFFRACTION 1.6Å

e6y64E1[E:34-291] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: EDO,GOL,MG ; X-RAY DIFFRACTION 1.6Å

e6y64G1[G:33-289] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: EDO,GOL,MG,SIA ; X-RAY DIFFRACTION 1.6Å

e6y64H1[H:34-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: EDO,GOL,MG ; X-RAY DIFFRACTION 1.6Å

e6y64I1[I:34-289] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: EDO,GOL,MG,SIA ; X-RAY DIFFRACTION 1.6Å

e6y64J1[J:34-289] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: EDO,GOL,MG,SIA ; X-RAY DIFFRACTION 1.6Å

e6y65AAA1[AAA:22-286] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: CL,EDO,IMD ; X-RAY DIFFRACTION 1.45Å

e6y65BBB1[BBB:22-286] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: CL,EDO,IMD ; X-RAY DIFFRACTION 1.45Å

e6y65CCC1[CCC:22-286] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: CL,EDO,IMD ; X-RAY DIFFRACTION 1.45Å

e6y65DDD1[DDD:22-286] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: CL,EDO,IMD ; X-RAY DIFFRACTION 1.45Å

e6y65EEE1[EEE:23-286] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: CL,EDO,IMD ; X-RAY DIFFRACTION 1.45Å

e6y65JJJ1[JJJ:23-286] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: CL,EDO,IMD ; X-RAY DIFFRACTION 1.45Å

e6y66AAA1[AAA:22-286] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: EDO,IMD,MNA ; X-RAY DIFFRACTION 1.95Å

e6y66BBB1[BBB:22-286] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: EDO,IMD,MNA ; X-RAY DIFFRACTION 1.95Å

e6y66DDD1[DDD:22-286] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: EDO,IMD,MNA ; X-RAY DIFFRACTION 1.95Å

e6y66EEE1[EEE:22-286] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: EDO,IMD,MNA ; X-RAY DIFFRACTION 1.95Å

e6y66FFF1[FFF:22-286] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: EDO,IMD,MNA ; X-RAY DIFFRACTION 1.95Å

e6y66HHH1[HHH:22-286] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: EDO,IMD,MNA ; X-RAY DIFFRACTION 1.95Å

e6y67GGG1[GGG:24-291] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: CL ; X-RAY DIFFRACTION 2.618Å

e6y67LLL1[LLL:24-291] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: CL ; X-RAY DIFFRACTION 2.618Å

e6y67MMM1[MMM:24-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: CL ; X-RAY DIFFRACTION 2.618Å

e6y67NNN1[NNN:24-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; X-RAY DIFFRACTION 2.618Å

e6y67SSS1[SSS:24-291] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: CL ; X-RAY DIFFRACTION 2.618Å

e6y67UUU1[UUU:24-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; X-RAY DIFFRACTION 2.618Å

e6y67VVV1[VVV:24-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; X-RAY DIFFRACTION 2.618Å

e6y67WWW1[WWW:24-291] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; X-RAY DIFFRACTION 2.618Å

e6y67XXX1[XXX:24-291] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: CL ; X-RAY DIFFRACTION 2.618Å

e6y67ccc1[ccc:26-289] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: CL ; X-RAY DIFFRACTION 2.618Å

e6y67ddd1[ddd:24-291] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: CL ; X-RAY DIFFRACTION 2.618Å

e6y6aA1[A:24-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: SIA ; X-RAY DIFFRACTION 2.65Å

e6y6aB1[B:24-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: CL,SIA ; X-RAY DIFFRACTION 2.65Å

e6y6aC1[C:24-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: MG,SIA ; X-RAY DIFFRACTION 2.65Å

e6y6aD1[D:24-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: SIA ; X-RAY DIFFRACTION 2.65Å

e6y6aG1[G:24-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: SIA ; X-RAY DIFFRACTION 2.65Å

e6y6aH1[H:24-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: SIA ; X-RAY DIFFRACTION 2.65Å

e6y6aI1[I:24-291] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: SIA ; X-RAY DIFFRACTION 2.65Å

e6y6aJ1[J:24-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: SIA ; X-RAY DIFFRACTION 2.65Å

e6y6aK1[K:24-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: SIA ; X-RAY DIFFRACTION 2.65Å

e6y6aN1[N:24-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: SIA ; X-RAY DIFFRACTION 2.65Å

e6y6aS1[S:24-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: SIA ; X-RAY DIFFRACTION 2.65Å

e6y6aU1[U:24-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: SIA ; X-RAY DIFFRACTION 2.65Å

e6y6aX1[X:24-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: SIA ; X-RAY DIFFRACTION 2.65Å

e6y6aY1[Y:24-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: SIA ; X-RAY DIFFRACTION 2.65Å

e6y6aZ1[Z:24-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: SIA ; X-RAY DIFFRACTION 2.65Å

e6y6aa1[a:24-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: SIA ; X-RAY DIFFRACTION 2.65Å

e6y6ae1[e:24-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: SIA ; X-RAY DIFFRACTION 2.65Å

e6y6ah1[h:24-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; X-RAY DIFFRACTION 2.65Å

e6y6ai1[i:24-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: SIA ; X-RAY DIFFRACTION 2.65Å

e6y6aj1[j:24-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: SIA ; X-RAY DIFFRACTION 2.65Å

e6y6ak1[k:24-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; X-RAY DIFFRACTION 2.65Å

e6y6al1[l:25-289] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; X-RAY DIFFRACTION 2.65Å

e6y6am1[m:24-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: SIA ; X-RAY DIFFRACTION 2.65Å

e6y6an1[n:24-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: SIA ; X-RAY DIFFRACTION 2.65Å

e6y9iAAA1[AAA:37-322] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major Capsid Protein VP1 ; ligands: MG ; X-RAY DIFFRACTION 1.90Å

e6y9iBBB1[BBB:37-322] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major Capsid Protein VP1 ; ligands: MG ; X-RAY DIFFRACTION 1.90Å

e6y9iCCC1[CCC:37-321] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major Capsid Protein VP1 ; ligands: MG ; X-RAY DIFFRACTION 1.90Å

e6y9iDDD1[DDD:37-322] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major Capsid Protein VP1 ; ligands: MG ; X-RAY DIFFRACTION 1.90Å

e6y9iEEE1[EEE:38-322] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major Capsid Protein VP1 ; ligands: MG ; X-RAY DIFFRACTION 1.90Å

e6y61AAA1[AAA:23-291] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: GOL ; X-RAY DIFFRACTION 2.45Å

e6y61CCC1[CCC:23-291] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: GOL ; X-RAY DIFFRACTION 2.45Å

e6y61JJJ1[JJJ:23-291] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: GOL ; X-RAY DIFFRACTION 2.45Å

e6y63HHH1[HHH:33-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: MG,MPD,SIA ; X-RAY DIFFRACTION 1.651Å

e6y63JJJ1[JJJ:33-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: MG,MPD ; X-RAY DIFFRACTION 1.651Å

e6y64F1[F:33-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: EDO,GOL,MG,SIA ; X-RAY DIFFRACTION 1.6Å

e6y67KKK1[KKK:23-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: CL ; X-RAY DIFFRACTION 2.618Å

e6y67aaa1[aaa:25-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: CL ; X-RAY DIFFRACTION 2.618Å

e6y67bbb1[bbb:25-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: CL ; X-RAY DIFFRACTION 2.618Å

e6y6aF1[F:23-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: SIA ; X-RAY DIFFRACTION 2.65Å

e6y6aL1[L:23-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: SIA ; X-RAY DIFFRACTION 2.65Å

e6y6aQ1[Q:23-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: SIA ; X-RAY DIFFRACTION 2.65Å

e6y6aV1[V:23-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: SIA ; X-RAY DIFFRACTION 2.65Å

e6y6aW1[W:23-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: SIA ; X-RAY DIFFRACTION 2.65Å

e6y6ab1[b:25-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: SIA ; X-RAY DIFFRACTION 2.65Å

e6y6ac1[c:25-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: SIA ; X-RAY DIFFRACTION 2.65Å

e6y6ad1[d:25-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: SIA ; X-RAY DIFFRACTION 2.65Å

e6y6af1[f:23-290] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ligands: SIA ; X-RAY DIFFRACTION 2.65Å

e6y5yB1[B:37-322] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: GOL,MG ; X-RAY DIFFRACTION 1.80Å

e6y5yA1[A:39-321] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: GOL,MG ; X-RAY DIFFRACTION 1.80Å

e6y5yD1[D:38-322] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: GOL,MG ; X-RAY DIFFRACTION 1.80Å

e6y5yF1[F:49-322] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: GOL,MG ; X-RAY DIFFRACTION 1.80Å

e6y5yG1[G:37-322] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: GOL,MG ; X-RAY DIFFRACTION 1.80Å

e6y5yJ1[J:49-322] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: GOL,MG ; X-RAY DIFFRACTION 1.80Å

e6y5yC1[C:38-321] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: GOL,MG ; X-RAY DIFFRACTION 1.80Å

e6y5yE1[E:38-321] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: GOL,MG ; X-RAY DIFFRACTION 1.80Å

e6y5yH1[H:48-321] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: GOL,MG ; X-RAY DIFFRACTION 1.80Å

e6y5yI1[I:48-322] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

VP1 ; ligands: GOL,MG ; X-RAY DIFFRACTION 1.80Å

e7k23D1[D:1-340] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ELECTRON MICROSCOPY

e7k25D1[D:1-340] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Capsid protein VP1 ; ELECTRON MICROSCOPY

e7b69GGG1[GGG:27-299] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1 ; ligands: DMS ; X-RAY DIFFRACTION 1.47Å

e7b69III1[III:27-299] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1 ; ligands: DMS ; X-RAY DIFFRACTION 1.47Å

e7b69JJJ1[JJJ:27-299] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1 ; ligands: DMS ; X-RAY DIFFRACTION 1.47Å

e7b6aCCC1[CCC:33-299] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1 ; ligands: CA,DMS,IOD ; X-RAY DIFFRACTION 1.44Å

e7b6cFFF1[FFF:19-299] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1,Major capsid protein VP1 ; ligands: CA ; X-RAY DIFFRACTION 2.48Å

e7b6cGGG1[GGG:18-298] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1,Major capsid protein VP1 ; ligands: CA ; X-RAY DIFFRACTION 2.48Å

e7b69AAA1[AAA:27-296] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1 ; ligands: DMS ; X-RAY DIFFRACTION 1.47Å

e7b69CCC1[CCC:27-296] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1 ; ligands: DMS ; X-RAY DIFFRACTION 1.47Å

e7b69DDD1[DDD:27-296] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1 ; ligands: DMS ; X-RAY DIFFRACTION 1.47Å

e7b69HHH1[HHH:27-296] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1 ; ligands: DMS ; X-RAY DIFFRACTION 1.47Å

e7b6aDDD1[DDD:32-296] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1 ; ligands: CA,DMS,IOD,NA ; X-RAY DIFFRACTION 1.44Å

e7b6cBBB1[BBB:19-296] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1,Major capsid protein VP1 ; X-RAY DIFFRACTION 2.48Å

e7b6cEEE1[EEE:18-296] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1,Major capsid protein VP1 ; ligands: CA ; X-RAY DIFFRACTION 2.48Å

e7b6cHHH1[HHH:18-296] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1,Major capsid protein VP1 ; ligands: DMS ; X-RAY DIFFRACTION 2.48Å

e7b6cIII1[III:19-296] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1,Major capsid protein VP1 ; ligands: CA ; X-RAY DIFFRACTION 2.48Å

e7b6cJJJ1[JJJ:18-296] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1,Major capsid protein VP1 ; ligands: CA ; X-RAY DIFFRACTION 2.48Å

e7b6cCCC1[CCC:18-297] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1,Major capsid protein VP1 ; ligands: DMS ; X-RAY DIFFRACTION 2.48Å

e7b6cDDD1[DDD:18-297] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1,Major capsid protein VP1 ; ligands: CA ; X-RAY DIFFRACTION 2.48Å

e7b69BBB1[BBB:26-297] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1 ; ligands: DMS ; X-RAY DIFFRACTION 1.47Å

e7b69EEE1[EEE:31-295] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1 ; ligands: DMS ; X-RAY DIFFRACTION 1.47Å

e7b69FFF1[FFF:28-297] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1 ; ligands: DMS ; X-RAY DIFFRACTION 1.47Å

e7b6aAAA1[AAA:32-297] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1 ; ligands: CA,DMS,IOD,NA ; X-RAY DIFFRACTION 1.44Å

e7b6aBBB1[BBB:30-297] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1 ; ligands: CA,DMS,IOD ; X-RAY DIFFRACTION 1.44Å

e7b6aEEE1[EEE:32-297] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1 ; ligands: CA,DMS,IOD ; X-RAY DIFFRACTION 1.44Å

e7b6cAAA1[AAA:19-297] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Major capsid protein VP1,Major capsid protein VP1 ; X-RAY DIFFRACTION 2.48Å

e7b6sFFF1[FFF:21-291] Image Pymol Jmol Links: PDB, SCOP, CATHDOI

Capsid protein VP1 ; ligands: MG,MPD,PEG,PGE ; X-RAY DIFFRACTION 1.85Å

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F: Unmapped domains

Pseudo group of domains that do not map to PFam family profiles. Domains inside should not be considered as in one family.

X: Glycosyl hydrolase domain-like

some similarity with Ig fold

beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain

beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander

a+b two layersone alpha-helix layer and one beta-sheet layer

a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers

a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers

a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers

a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain

a/b barrelsrepeating beta-alpha units form a barrel

a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers

mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions

few secondary structure elementsstabilized by cofactors or disulfides

extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes