Evolutionary classification of protein domain structures
alpha arraysalpha-helix arrays with mainly perpendicular helices
alpha bundlesalpha-helix bundles with mainly parallel helices
alpha superhelicesrepeating alpha-helix hairpins form a superhelix
alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain
alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix
beta barrelssingle beta-sheet folded upon itself to form a barrel
beta meanderssingle beta-sheet with mainly meander topology
beta sandwichestwo beta-sheets stacked together to form a sandwich
Representatives:
e1h2kA1[A:15-349] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
FACTOR INHIBITING HIF1 ; ligands: FE2,OGA,SO4 ; X-RAY DIFFRACTION 2.150Å
e1iz3A1[A:15-349] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
FIH ; ligands: SO4 ; X-RAY DIFFRACTION 2.8Å
e1yciA1[A:15-349] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR ; ligands: FE2,NDF,SO4 ; X-RAY DIFFRACTION 2.7Å
e2cgoA1[A:15-349] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR ; ligands: FE,FUM,SO4 ; X-RAY DIFFRACTION 2.300Å
e1h2nA1[A:15-349] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR ; ligands: AKG,FE2,SO4 ; X-RAY DIFFRACTION 2.840Å
e1mzeA1[A:15-349] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
factor inhibiting HIF1 ; ligands: FE2,TAR ; X-RAY DIFFRACTION 2.20Å
e1h2lA1[A:15-349] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
FACTOR INHIBITING HIF1 ; ligands: AKG,FE2,SO4 ; X-RAY DIFFRACTION 2.250Å
e1h2mA1[A:15-349] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
FACTOR INHIBITING HIF1 ; ligands: OGA,SO4,ZN ; X-RAY DIFFRACTION 2.500Å
e1mzfA1[A:15-349] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
factor inhibiting HIF1 ; ligands: AKG,FE2 ; X-RAY DIFFRACTION 2.40Å
e2cgnA1[A:15-349] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR ; ligands: FE,SIN,SO4 ; X-RAY DIFFRACTION 2.400Å
e2y0iA1[A:11-349] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR ; ligands: AKG,FE2,GOL,SO4 ; X-RAY DIFFRACTION 2.28Å
e3uyjA1[A:173-416] Image Pymol Jmol Links: PDB, SCOP, CATH
LYSINE-SPECIFIC DEMETHYLASE 8 ; ligands: AKG,NI ; X-RAY DIFFRACTION 2.35Å
e4ai8A1[A:1-349] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR ; ligands: DZA,GOL,SO4,ZN ; X-RAY DIFFRACTION 2.40Å
e4aapA1[A:0-454] Image Pymol Jmol Links: PDB, SCOP, CATH
LYSINE-SPECIFIC DEMETHYLASE 8 ; ligands: OGA,ZN ; X-RAY DIFFRACTION 2.60Å
e4gjyA1[A:182-416] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
JMJC DOMAIN-CONTAINING PROTEIN 5 ; ligands: CO,OGA ; X-RAY DIFFRACTION 1.25Å
e4b7eA1[A:1-349] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR ; ligands: GOL,OGA,SO4,ZN ; X-RAY DIFFRACTION 2.50Å
e4bioA1[A:11-349] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR ; ligands: 8XQ,FE,GOL,SO4 ; X-RAY DIFFRACTION 2.45Å
e2ilmA1[A:8-349] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Hypoxia-inducible factor 1 alpha inhibitor ; ligands: AKG,BCT,FE2,GOL,SO4 ; X-RAY DIFFRACTION 2.300Å
e3d8cA1[A:9-349] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Hypoxia-inducible factor 1 alpha inhibitor ; ligands: AKG,GOL,SO4,ZN ; X-RAY DIFFRACTION 2.100Å
e2wa3A1[A:15-349] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR ; ligands: A29,FE2 ; X-RAY DIFFRACTION 2.50Å
e2wa4A1[A:15-349] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR ; ligands: 069,FE2,SO4 ; X-RAY DIFFRACTION 2.49Å
e3kcxA1[A:15-349] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Hypoxia-inducible factor 1-alpha inhibitor ; ligands: CQL,FE2,GOL,SO4 ; X-RAY DIFFRACTION 2.600Å
e3kcyA1[A:15-349] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Hypoxia-inducible factor 1-alpha inhibitor ; ligands: FE2,HQY,SO4 ; X-RAY DIFFRACTION 2.300Å
e2w0xA1[A:8-349] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR ; ligands: FE2,GOL,PD2,SO4 ; X-RAY DIFFRACTION 2.13Å
e3uyjB1[B:181-416] Image Pymol Jmol Links: PDB, SCOP, CATH
LYSINE-SPECIFIC DEMETHYLASE 8 ; ligands: AKG,NI ; X-RAY DIFFRACTION 2.35Å
e3p3nA1[A:9-349] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed,
HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR ; ligands: AKG,FE2,GOL,SO4 ; X-RAY DIFFRACTION 2.4Å
e3p3pA1[A:9-349] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed,
Hypoxia-inducible factor 1-alpha inhibitor ; ligands: AKG,FE2,GOL,SO4 ; X-RAY DIFFRACTION 2.6Å
e2xumA1[A:1-349] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR ; ligands: OGA,SO4,ZN ; X-RAY DIFFRACTION 2.20Å
e2yc0A1[A:1-349] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR ; ligands: 2HG,FE2,GOL,SO4 ; X-RAY DIFFRACTION 2.15Å
e2ydeA1[A:1-349] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR ; ligands: FE,GOL,S2G,SO4 ; X-RAY DIFFRACTION 2.28Å
e3od4A1[A:8-349] Image Pymol Jmol Links: PDB, SCOP, CATH
Hypoxia-inducible factor 1-alpha inhibitor ; ligands: 8XQ,GOL,SO4,ZN ; X-RAY DIFFRACTION 2.200Å
e4b7kA1[A:1-325] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR ; ligands: OGA,SO4,ZN ; X-RAY DIFFRACTION 2.39Å
e4gazA1[A:176-416] Image Pymol Jmol Links: PDB, SCOP, CATH
LYSINE-SPECIFIC DEMETHYLASE 8 ; ligands: NI,OGA ; X-RAY DIFFRACTION 2.81Å
e4gazB1[B:176-416] Image Pymol Jmol Links: PDB, SCOP, CATH
LYSINE-SPECIFIC DEMETHYLASE 8 ; ligands: NI,OGA ; X-RAY DIFFRACTION 2.81Å
e4jaaA1[A:22-349] Image Pymol Jmol Links: PDB, SCOP, CATH
HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR ; ligands: OGA,SO4,ZN ; X-RAY DIFFRACTION 2.39Å
e4gjzA2[A:182-416] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
JMJC DOMAIN-CONTAINING PROTEIN 5 ; ligands: AKG,BME,CO ; X-RAY DIFFRACTION 1.05Å
e4aapB2[B:0-454] Image Pymol Jmol Links: PDB, SCOP, CATH
LYSINE-SPECIFIC DEMETHYLASE 8 ; ligands: OGA,ZN ; X-RAY DIFFRACTION 2.60Å
e4nr1A1[A:15-349] Image Pymol Jmol Links: PDB, SCOP, CATH
Hypoxia-inducible factor 1-alpha inhibitor ; ligands: OGA,SO4,ZN ; X-RAY DIFFRACTION 2.680Å
e4qszA3[A:-4-316] Image Pymol Jmol Links: PDB, SCOP, CATH
Maltose-binding periplasmic protein, JmjC domain-containing protein 7 chimera ; X-RAY DIFFRACTION 2.59Å
e4qszB3[B:0-316] Image Pymol Jmol Links: PDB, SCOP, CATH
Maltose-binding periplasmic protein, JmjC domain-containing protein 7 chimera ; X-RAY DIFFRACTION 2.59Å
e4qu2A1[A:-1-219,A:240-316] Image Pymol Jmol Links: PDB, SCOP, CATH
JmjC domain-containing protein 7 ; ligands: AKG,NI ; X-RAY DIFFRACTION 2.55Å
e4qu2B1[B:-1-219,B:240-316] Image Pymol Jmol Links: PDB, SCOP, CATH
JmjC domain-containing protein 7 ; ligands: AKG,NI ; X-RAY DIFFRACTION 2.55Å
e4qu1A1[A:181-416] Image Pymol Jmol Links: PDB, SCOP, CATH
Lysine-specific demethylase 8 ; ligands: AKG,GOL,NI ; X-RAY DIFFRACTION 1.57Å
e4z1vA1[A:9-349] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Hypoxia-inducible factor 1-alpha inhibitor ; ligands: FE,NO,OGA,PEG,SO4 ; X-RAY DIFFRACTION 2.100Å
e4z2wA1[A:9-349] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Hypoxia-inducible factor 1-alpha inhibitor ; ligands: AKG,FE,PEG,SO4 ; X-RAY DIFFRACTION 2.420Å
e5jwpA1[A:8-349] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Hypoxia-inducible factor 1-alpha inhibitor ; ligands: AKG,GOL,SO4,ZN ; X-RAY DIFFRACTION 2.100Å
e5fbjA1[A:181-416] Image Pymol Jmol Links: PDB, SCOP, CATH
Lysine-specific demethylase 8 ; ligands: AKG,NMM,ZN ; X-RAY DIFFRACTION 2.4Å
e5jwkA1[A:9-349] Image Pymol Jmol Links: PDB, SCOP, CATH
Hypoxia-inducible factor 1-alpha inhibitor ; ligands: AKG,FE2,PEG,SO4 ; X-RAY DIFFRACTION 2.300Å
e5jwlA1[A:9-349] Image Pymol Jmol Links: PDB, SCOP, CATH
Hypoxia-inducible factor 1-alpha inhibitor ; ligands: AKG,PEG,SO4,ZN ; X-RAY DIFFRACTION 2.400Å
e5op6A1[A:15-349] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Hypoxia-inducible factor 1-alpha inhibitor ; ligands: A0W,GOL,SO4,ZN ; X-RAY DIFFRACTION 2.45Å
e5op8A1[A:15-349] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Hypoxia-inducible factor 1-alpha inhibitor ; ligands: A1H,GOL,SO4,ZN ; X-RAY DIFFRACTION 2.3Å
e5opcA1[A:11-349] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Hypoxia-inducible factor 1-alpha inhibitor ; ligands: A1Z,GOL,SO4,ZN ; X-RAY DIFFRACTION 2.3Å
e6f4mA1[A:182-416] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
JmjC domain-containing protein 5 ; X-RAY DIFFRACTION 1.70Å
e6f4oA1[A:182-416] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
JmjC domain-containing protein 5 ; ligands: MN,SIN,TRS ; X-RAY DIFFRACTION 1.28Å
e6f4pA1[A:181-416] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
JmjC domain-containing protein 5 ; ligands: MN,OGA,TRS ; X-RAY DIFFRACTION 1.45Å
e6f4qA1[A:182-416] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
JmjC domain-containing protein 5 ; ligands: GOL,MN,OGA,TRS ; X-RAY DIFFRACTION 1.12Å
e6f4rA1[A:182-416] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
JmjC domain-containing protein 5 ; ligands: MN,OGA,TRS ; X-RAY DIFFRACTION 1.30Å
e6f4sA1[A:182-416] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
JmjC domain-containing protein 5 ; ligands: AKG,GOL,MN,TRS ; X-RAY DIFFRACTION 1.46Å
e6f4tA1[A:182-416] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
JmjC domain-containing protein 5 ; ligands: GOL,MN,OGA,TRS ; X-RAY DIFFRACTION 1.22Å
e6f4nB1[B:174-416] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
JmjC domain-containing protein 5 ; ligands: AKG,MN ; X-RAY DIFFRACTION 2.54Å
e6avsA1[A:181-416] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lysine-specific demethylase 8 ; ligands: NMM,ZN ; X-RAY DIFFRACTION 2.000Å
e6ax3A1[A:181-416] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lysine-specific demethylase 8 ; ligands: 2MR,AKG,ZN ; X-RAY DIFFRACTION 2.25Å
e5nfnB1[B:-1-219,B:240-316] Image Pymol Jmol Links: PDB, SCOP, CATH
JmjC domain-containing protein 7 ; ligands: AKG,GOL,MN,NO3 ; X-RAY DIFFRACTION 2.980Å
e5nfnA1[A:0-219,A:240-316] Image Pymol Jmol Links: PDB, SCOP, CATH
JmjC domain-containing protein 7 ; ligands: AKG,MN,NO3 ; X-RAY DIFFRACTION 2.980Å
e5nfnC1[C:0-219,C:240-316] Image Pymol Jmol Links: PDB, SCOP, CATH
JmjC domain-containing protein 7 ; ligands: MN,NO3 ; X-RAY DIFFRACTION 2.980Å
e5nfnD1[D:-1-219,D:240-316] Image Pymol Jmol Links: PDB, SCOP, CATH
JmjC domain-containing protein 7 ; ligands: AKG,GOL,MN,NO3 ; X-RAY DIFFRACTION 2.980Å
e5nfoA1[A:0-219,A:240-316] Image Pymol Jmol Links: PDB, SCOP, CATH
JmjC domain-containing protein 7 ; ligands: AKG,GOL,MN,NO3 ; X-RAY DIFFRACTION 2.170Å
e5nfoB1[B:-1-219,B:240-316] Image Pymol Jmol Links: PDB, SCOP, CATH
JmjC domain-containing protein 7 ; ligands: AKG,GOL,MN,NO3 ; X-RAY DIFFRACTION 2.170Å
e6f4nA1[A:174-416] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
JmjC domain-containing protein 5 ; ligands: AKG,MN ; X-RAY DIFFRACTION 2.54Å
e6h9jA1[A:12-349] Image Pymol Jmol Links: PDB, SCOP, CATH
Hypoxia-inducible factor 1-alpha inhibitor ; ligands: GOL,OGA,SO4,ZN ; X-RAY DIFFRACTION 1.83Å
e6hkpA1[A:12-349] Image Pymol Jmol Links: PDB, SCOP, CATH
Hypoxia-inducible factor 1-alpha inhibitor ; ligands: GOL,OGA,SO4,ZN ; X-RAY DIFFRACTION 1.90Å
e6ha6A1[A:10-349] Image Pymol Jmol Links: PDB, SCOP, CATH
Hypoxia-inducible factor 1-alpha inhibitor ; ligands: GOL,OGA,SO4,ZN ; X-RAY DIFFRACTION 1.98Å
e6hc8A1[A:1-349] Image Pymol Jmol Links: PDB, SCOP, CATH
Hypoxia-inducible factor 1-alpha inhibitor ; ligands: GOL,OGA,SO4,ZN ; X-RAY DIFFRACTION 1.90Å
e6hl5A1[A:12-349] Image Pymol Jmol Links: PDB, SCOP, CATH
Hypoxia-inducible factor 1-alpha inhibitor ; ligands: GOL,OGA,SO4,ZN ; X-RAY DIFFRACTION 1.98Å
e6hl6A1[A:15-349] Image Pymol Jmol Links: PDB, SCOP, CATH
Hypoxia-inducible factor 1-alpha inhibitor ; ligands: GOL,OGA,SO4,ZN ; X-RAY DIFFRACTION 1.97Å
e6i9lA1[A:182-416] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
JmjC domain-containing protein 5 ; ligands: MN,PD2,TRS ; X-RAY DIFFRACTION 1.53Å
e6i9mA1[A:182-416] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
JmjC domain-containing protein 5 ; ligands: 2HG,GOL,MN,TRS ; X-RAY DIFFRACTION 1.650Å
e6i9nA1[A:182-416] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
JmjC domain-containing protein 5 ; ligands: GOL,MN,S2G,TRS ; X-RAY DIFFRACTION 1.34Å
e6rujA1[A:1-349] Image Pymol Jmol Links: PDB, SCOP, CATHDOI
Hypoxia-inducible factor 1-alpha inhibitor ; ligands: OGA,SO4,ZN ; X-RAY DIFFRACTION 2.42Å
e7a1oA1[A:3-349] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Hypoxia-inducible factor 1-alpha inhibitor ; ligands: QVT,SO4,ZN ; X-RAY DIFFRACTION 2.21Å
e7a1jA1[A:15-349] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Hypoxia-inducible factor 1-alpha inhibitor ; ligands: QVN,SO4,ZN ; X-RAY DIFFRACTION 1.900Å
e7a1kA1[A:15-349] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Hypoxia-inducible factor 1-alpha inhibitor ; ligands: QVZ,SO4,ZN ; X-RAY DIFFRACTION 1.990Å
e7a1lA1[A:15-349] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Hypoxia-inducible factor 1-alpha inhibitor ; ligands: ROQ,SO4,ZN ; X-RAY DIFFRACTION 2.29Å
e7a1mA1[A:15-349] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Hypoxia-inducible factor 1-alpha inhibitor ; ligands: QVW,SO4,ZN ; X-RAY DIFFRACTION 2.178Å
e7a1nA1[A:20-349] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Hypoxia-inducible factor 1-alpha inhibitor ; ligands: ROQ,SO4,ZN ; X-RAY DIFFRACTION 2.010Å
e7a1pA1[A:12-349] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Hypoxia-inducible factor 1-alpha inhibitor ; ligands: QW2,SO4,ZN ; X-RAY DIFFRACTION 1.759Å
e7a1qA1[A:12-349] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Hypoxia-inducible factor 1-alpha inhibitor ; ligands: QVQ,SO4,ZN ; X-RAY DIFFRACTION 1.750Å
e7a1sA1[A:15-349] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Hypoxia-inducible factor 1-alpha inhibitor ; ligands: ROQ,SO4,ZN ; X-RAY DIFFRACTION 2.006Å
e7dywA1[A:181-416] Image Pymol Jmol Links: PDB, SCOP, CATH
Bifunctional peptidase and arginyl-hydroxylase JMJD5 ; ligands: HRL,MN ; X-RAY DIFFRACTION 2.13Å
e7dytA1[A:182-416] Image Pymol Jmol Links: PDB, SCOP, CATH
Bifunctional peptidase and arginyl-hydroxylase JMJD5 ; ligands: HR3,MN ; X-RAY DIFFRACTION 1.62Å
e7dyuA1[A:182-416] Image Pymol Jmol Links: PDB, SCOP, CATH
Bifunctional peptidase and arginyl-hydroxylase JMJD5 ; ligands: HR9,MN,TRS ; X-RAY DIFFRACTION 1.72Å
e7dyvA1[A:182-416] Image Pymol Jmol Links: PDB, SCOP, CATH
Bifunctional peptidase and arginyl-hydroxylase JMJD5 ; ligands: HRF,MN ; X-RAY DIFFRACTION 1.92Å
e7dyxA1[A:182-416] Image Pymol Jmol Links: PDB, SCOP, CATH
Bifunctional peptidase and arginyl-hydroxylase JMJD5 ; ligands: HRR,MN ; X-RAY DIFFRACTION 2.27Å
e7yxgA1[A:1-313] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
GH14974p ; ligands: AKG,EDO,MN ; X-RAY DIFFRACTION 1.640Å
e7yxgB1[B:-1-313] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
GH14974p ; ligands: AKG,EDO,MG,MN ; X-RAY DIFFRACTION 1.640Å
e7yxhA1[A:1-312] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
GH14974p ; ligands: EDO,MG,MN,SIN ; X-RAY DIFFRACTION 2.300Å
e7yxhB1[B:1-216,B:241-312] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
GH14974p ; ligands: EDO,MN ; X-RAY DIFFRACTION 2.300Å
e7yxiA1[A:0-216,A:241-312] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
GH14974p ; ligands: EDO,MN,OGA,SO4 ; X-RAY DIFFRACTION 2.100Å
e7yxiB1[B:1-312] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
GH14974p ; ligands: EDO,MN,OGA,SO4 ; X-RAY DIFFRACTION 2.100Å
e7yxjA1[A:1-312] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
GH14974p ; ligands: EDO,MN,PD2,PEG ; X-RAY DIFFRACTION 2.450Å
e7yxjB1[B:0-216,B:241-312] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
GH14974p ; ligands: EDO,MN,PD2 ; X-RAY DIFFRACTION 2.450Å
e7yxjC1[C:0-216,C:241-312] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
GH14974p ; ligands: EDO,MN,PD2 ; X-RAY DIFFRACTION 2.450Å
e7yxjD1[D:0-216,D:241-312] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
GH14974p ; ligands: EDO,MN,PD2 ; X-RAY DIFFRACTION 2.450Å
e7yxkA1[A:1-216,A:241-312] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
GH14974p ; ligands: ACT,EDO,I78,MN ; X-RAY DIFFRACTION 2.430Å
e7yxkB1[B:1-216,B:241-312] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
GH14974p ; ligands: ACT,EDO,I78,MN ; X-RAY DIFFRACTION 2.430Å
e7yxlA1[A:0-216,A:241-312] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
GH14974p ; ligands: ACT,EDO,MG,MN,NDF ; X-RAY DIFFRACTION 2.200Å
e7yxlB1[B:1-216,B:241-312] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
GH14974p ; ligands: ACT,EDO,MG,MN,NDF ; X-RAY DIFFRACTION 2.200Å
e7uq3A1[A:182-416] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Bifunctional peptidase and arginyl-hydroxylase JMJD5 ; ligands: GOL,MN,O2U ; X-RAY DIFFRACTION 1.490Å
e8a82A1[A:1-361] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Cupin_8 domain-containing protein ; ligands: FE,GOL ; X-RAY DIFFRACTION 2.05Å
e3al5A1[A:4-311] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
JmjC domain-containing protein C2orf60 ; X-RAY DIFFRACTION 2.500Å
e3al5B1[B:1-311] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
JmjC domain-containing protein C2orf60 ; ligands: MG ; X-RAY DIFFRACTION 2.500Å
e3al5C1[C:6-311] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
JmjC domain-containing protein C2orf60 ; X-RAY DIFFRACTION 2.500Å
e3al5D1[D:4-311] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
JmjC domain-containing protein C2orf60 ; ligands: MG ; X-RAY DIFFRACTION 2.500Å
e3al6A1[A:5-311] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
JmjC domain-containing protein C2orf60 ; ligands: NI ; X-RAY DIFFRACTION 2.800Å
e3al6B1[B:4-311] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
JmjC domain-containing protein C2orf60 ; ligands: AKG,NI ; X-RAY DIFFRACTION 2.800Å
e3al6C1[C:6-311] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
JmjC domain-containing protein C2orf60 ; ligands: NI ; X-RAY DIFFRACTION 2.800Å
e3al6D1[D:4-311] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
JmjC domain-containing protein C2orf60 ; ligands: AKG,NI ; X-RAY DIFFRACTION 2.800Å
Pseudo group of domains that do not map to PFam family profiles. Domains inside should not be considered as in one family.
some similarity with Ig fold
beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain
beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander
a+b two layersone alpha-helix layer and one beta-sheet layer
a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers
a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers
a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers
a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain
a/b barrelsrepeating beta-alpha units form a barrel
a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers
mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions
few secondary structure elementsstabilized by cofactors or disulfides
extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes