Evolutionary classification of protein domain structures
alpha arraysalpha-helix arrays with mainly perpendicular helices
alpha bundlesalpha-helix bundles with mainly parallel helices
alpha superhelicesrepeating alpha-helix hairpins form a superhelix
alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain
alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix
beta barrelssingle beta-sheet folded upon itself to form a barrel

Refs: Structure 14, 1489-1498; Current opinion in structural biology 18, 358-365


12543, 2-crossover-3

Representatives:
e2aneA1[A:8-117]
nonrep
Image
Pymol
Jmol Links:
PDB,
SCOP,
CATH, PubMed,
DOI
ATP-dependent protease La ; X-RAY DIFFRACTION 2.03Å
e8ojhB2[B:44-339] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
; ligands: EDO,ZN ; X-RAY DIFFRACTION 2.720Å
e2aneH1[H:8-116] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
ATP-dependent protease La ; X-RAY DIFFRACTION 2.03Å
e2aneD1[D:8-117] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
ATP-dependent protease La ; X-RAY DIFFRACTION 2.03Å
e2aneG1[G:8-117] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
ATP-dependent protease La ; X-RAY DIFFRACTION 2.03Å
e2aneB1[B:10-117] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
ATP-dependent protease La ; X-RAY DIFFRACTION 2.03Å
e2aneC1[C:10-117] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
ATP-dependent protease La ; X-RAY DIFFRACTION 2.03Å
e2aneF1[F:8-117] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
ATP-dependent protease La ; X-RAY DIFFRACTION 2.03Å
e2aneE1[E:8-117] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
ATP-dependent protease La ; X-RAY DIFFRACTION 2.03Å
e1zboB1[B:2-198] Image Pymol Jmol Links: PDB, SCOP, CATH
hypothetical protein BPP1347 ; X-RAY DIFFRACTION 2.6Å
e3ljcA1[A:7-245] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
ATP-dependent protease La ; X-RAY DIFFRACTION 2.6Å
e4ci2B1[B:47-309] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
PROTEIN CEREBLON ; X-RAY DIFFRACTION 2.95Å
e4ci3B1[B:47-309] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
PROTEIN CEREBLON ; X-RAY DIFFRACTION 3.50Å
e5hxbZ1[Z:48-319] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Protein cereblon ; X-RAY DIFFRACTION 3.600Å
e5hxbC2[C:48-319] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Protein cereblon ; X-RAY DIFFRACTION 3.600Å
e5v3oC2[C:47-319] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Protein cereblon ; X-RAY DIFFRACTION 3.2Å
e6bn7B1[B:44-319] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Protein cereblon ; X-RAY DIFFRACTION 3.49Å
e6bnbB1[B:64-319] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Protein cereblon ; X-RAY DIFFRACTION 6.34Å
e6bn9B1[B:44-319] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Protein cereblon ; X-RAY DIFFRACTION 4.38Å
e6boyB2[B:44-319] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Protein cereblon ; X-RAY DIFFRACTION 3.33Å
e6bn8B2[B:44-319] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Protein cereblon ; X-RAY DIFFRACTION 3.99Å
e6h0gB2[B:42-319] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Protein cereblon ; X-RAY DIFFRACTION 4.170Å
e6h0fB1[B:69-319] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Protein cereblon ; X-RAY DIFFRACTION 3.250Å
e6h0fE1[E:69-319] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Protein cereblon ; X-RAY DIFFRACTION 3.250Å
e6h0fH2[H:69-319] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Protein cereblon ; X-RAY DIFFRACTION 3.250Å
e6h0fK1[K:69-319] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Protein cereblon ; X-RAY DIFFRACTION 3.250Å
e6h0gE1[E:42-319] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Protein cereblon ; X-RAY DIFFRACTION 4.170Å
e6ihgA1[A:5-190] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease ; X-RAY DIFFRACTION 2.397Å
e7cayA1[A:5-172] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
ATP-dependent protease ; X-RAY DIFFRACTION 2.800Å
e7nfyA5[A:123-221,A:272-410] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7nfyB5[B:123-221,B:272-412] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7nfyC5[C:123-221,C:272-412] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7nfyD5[D:123-221,D:272-410] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7nfyE5[E:123-221,E:272-410] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7nfyF5[F:123-221,F:272-410] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7ng4A5[A:123-221,A:272-410] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7ng4B5[B:123-221,B:272-410] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7ng4C5[C:123-221,C:272-411] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7ng4D5[D:123-221,D:272-410] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7ng4E5[E:123-221,E:272-412] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7ng4F5[F:123-221,F:272-410] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7ng5A5[A:123-221,A:272-410] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7ng5B5[B:123-221,B:272-410] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7ng5C5[C:123-221,C:272-410] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7ng5D5[D:123-221,D:272-410] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7ng5E5[E:123-221,E:272-410] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7ng5F5[F:123-221,F:272-409] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e6vbkA1[A:1-212] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon211 ; ligands: GOL ; X-RAY DIFFRACTION 1.997Å
e6vbkB1[B:1-210] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon211 ; X-RAY DIFFRACTION 1.997Å
e6xk9Z1[Z:46-339] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Protein cereblon ; ligands: ZN ; X-RAY DIFFRACTION 3.64Å
e6xk9C2[C:47-339] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Protein cereblon ; ligands: ZN ; X-RAY DIFFRACTION 3.64Å
e7ngcA5[A:123-221,A:272-410] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7ngfA5[A:123-221,A:272-411] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7ngcB2[B:123-221,B:272-412] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7ngcC2[C:123-221,C:272-412] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7ngcD2[D:123-221,D:272-412] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7ngcE2[E:123-221,E:272-412] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7ngcF2[F:123-221,F:272-412] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7ngfB2[B:123-221,B:272-412] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7ngfC2[C:123-221,C:272-412] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7ngfD2[D:123-221,D:272-412] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7ngfE2[E:123-221,E:272-412] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7ngfF2[F:123-221,F:272-412] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7nglA2[A:123-221,A:272-412] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7nglB2[B:123-221,B:272-412] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7nglC2[C:123-221,C:272-412] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7nglD2[D:123-221,D:272-412] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7nglE2[E:123-221,E:272-412] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7nglF2[F:123-221,F:272-412] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7ngpA2[A:123-221,A:272-412] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7ngpB2[B:123-221,B:272-412] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7ngpC2[C:123-221,C:272-412] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7ngpD2[D:123-221,D:272-412] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7ngpE2[E:123-221,E:272-412] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7ngpF2[F:123-221,F:272-412] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7ngqA2[A:123-221,A:272-412] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7ngqB2[B:123-221,B:272-412] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7ngqC2[C:123-221,C:272-412] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7ngqD2[D:123-221,D:272-412] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7ngqE2[E:123-221,E:272-412] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7ngqF2[F:123-221,F:272-412] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7craA1[A:-1-210] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease ; ligands: SO4 ; X-RAY DIFFRACTION 1.7Å
e7lpsB2[B:47-339] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Protein cereblon ; ligands: RN9,ZN ; X-RAY DIFFRACTION 3.78Å
e7cr9A1[A:0-206] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease ; X-RAY DIFFRACTION 2.09Å
e7cr9B1[B:0-206] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease ; X-RAY DIFFRACTION 2.09Å
e7lpsE2[E:47-339] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Protein cereblon ; ligands: RN9,ZN ; X-RAY DIFFRACTION 3.78Å
e7lpsH2[H:47-339] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Protein cereblon ; ligands: RN9,ZN ; X-RAY DIFFRACTION 3.78Å
e7lpsK2[K:47-339] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Protein cereblon ; ligands: RN9,ZN ; X-RAY DIFFRACTION 3.78Å
e7oxoA2[A:123-221,A:272-412] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7oxoB2[B:123-221,B:272-412] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7oxoC2[C:123-221,C:272-412] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7oxoD2[D:123-221,D:272-412] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7oxoE2[E:123-221,E:272-412] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e7oxoF2[F:123-221,F:272-412] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Lon protease homolog, mitochondrial ; ELECTRON MICROSCOPY
e8d7uB2[B:42-339] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Protein cereblon ; ligands: QFC,ZN ; ELECTRON MICROSCOPY
e8d7vB1[B:42-339] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Protein cereblon ; ligands: QFC,ZN ; ELECTRON MICROSCOPY
e8d7wB2[B:42-339] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Protein cereblon ; ligands: QFC,ZN ; ELECTRON MICROSCOPY
e8d7zB1[B:45-339] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Protein cereblon ; ligands: QFC,ZN ; ELECTRON MICROSCOPY
e8d80B1[B:45-339] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Protein cereblon ; ligands: ZN ; ELECTRON MICROSCOPY
e8d81B1[B:45-339] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Protein cereblon ; ligands: ZN ; ELECTRON MICROSCOPY
e8deyA1[A:71-339] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Protein cereblon ; ligands: ZN ; X-RAY DIFFRACTION 3.700Å
e8deyD2[D:71-339] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Protein cereblon ; ligands: ZN ; X-RAY DIFFRACTION 3.700Å
e7u8fA1[A:69-339] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Protein cereblon ; ligands: ZN ; X-RAY DIFFRACTION 3.150Å
e7u8fD2[D:69-339] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
Protein cereblon ; ligands: ZN ; X-RAY DIFFRACTION 3.150Å
e8oizB2[B:44-339] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
; ligands: ZN ; X-RAY DIFFRACTION 2.500Å
e1zboA1[A:2-198]
nonrep
Image
Pymol
Jmol Links:
PDB,
SCOP,
CATH
hypothetical protein BPP1347 ; X-RAY DIFFRACTION 2.6Å
contains a C-terminal alpha bundle subdomain
e3m65A1[A:4-209]
nonrep
Image
Pymol
Jmol Links:
PDB,
SCOP,
CATH, PubMed,
DOI
ATP-DEPENDENT PROTEASE LA 1 ; X-RAY DIFFRACTION 2.6Å
contains a C-terminal alpha bundle subdomain

Pseudo group of domains that do not map to PFam family profiles. Domains inside should not be considered as in one family.
beta meanderssingle beta-sheet with mainly meander topology
beta sandwichestwo beta-sheets stacked together to form a sandwich
beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain
beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander
a+b two layersone alpha-helix layer and one beta-sheet layer
a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers
a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers
a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers
a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain
a/b barrelsrepeating beta-alpha units form a barrel
a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers
mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions
few secondary structure elementsstabilized by cofactors or disulfides
extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes