Evolutionary classification of protein domain structures
alpha arraysalpha-helix arrays with mainly perpendicular helices
alpha bundlesalpha-helix bundles with mainly parallel helices
alpha superhelicesrepeating alpha-helix hairpins form a superhelix
alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain
alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix
beta barrelssingle beta-sheet folded upon itself to form a barrel
beta meanderssingle beta-sheet with mainly meander topology
beta sandwichestwo beta-sheets stacked together to form a sandwich
beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain
beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander
a+b two layersone alpha-helix layer and one beta-sheet layer
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Pseudo group of domains that do not map to PFam family profiles. Domains inside should not be considered as in one family.
Representatives:
e4c2mP9[P:1215-1262]
* nonrep
Image
Pymol
Jmol Links:
PDB,
SCOP,
CATH, PubMed,
DOI
DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA190 ; X-RAY DIFFRACTION 2.80Å
e4c3hA8[A:1235-1261,A:1498-1544]
nonrep
Image
Pymol
Jmol Links:
PDB,
SCOP,
CATH, PubMed,
DOI
DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA190 ; X-RAY DIFFRACTION 3.27Å
e3hkzC3[C:116-147,C:233-275]
nonrep
Image
Pymol
Jmol Links:
PDB,
SCOP,
CATH, PubMed,
DOI
DNA-directed RNA polymerase subunit A'' ; X-RAY DIFFRACTION 3.4Å
e2nvzA12[A:1103-1131,A:1243-1300]
* nonrep
Image
Pymol
Jmol Links:
PDB,
SCOP,
CATH, PubMed,
DOI
DNA-directed RNA polymerase II largest subunit ; X-RAY DIFFRACTION 4.2Å
e1i6hA9[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 3.3Å
e1r9sA9[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 4.25Å
e1r5uA9[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 4.5Å
e4a3gA4[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.50Å
e4a3iA4[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.80Å
e4a93A4[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.40Å
e4bbrA4[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.40Å
e4bxzA4[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 4.80Å
e4by7A4[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.15Å
e3houA4[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.2Å
e3houM4[M:1103-1131,M:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.2Å
e3hovA4[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.5Å
e3howA4[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.6Å
e3hoxA4[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.65Å
e3hoyA4[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.4Å
e3hozA4[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.65Å
e3j1nA4[A:1093-1121,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; ELECTRON MICROSCOPY
e2ja5A4[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.800Å
e2ja6A4[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 4.00Å
e2ja7A4[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 3.80Å
e2ja7M4[M:1103-1131,M:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 3.80Å
e2ja8A4[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 3.80Å
e3k1fA4[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 4.3Å
e2nvtA4[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 3.36Å
e3po2A4[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.3Å
e3qt1A4[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 4.3Å
e2r92A4[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.800Å
e2r93A4[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 4.0Å
e1wcmA4[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 3.8Å
e1y1wA4[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 4.0Å
e2yu9A4[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II largest subunit ; X-RAY DIFFRACTION 3.400Å
e4a3bA5[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.50Å
e4a3cA5[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.50Å
e4a3dA5[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.40Å
e4a3eA5[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.40Å
e4a3fA5[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.50Å
e4a3jA5[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.7Å
e4a3kA5[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.50Å
e4a3lA5[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.50Å
e4a3mA5[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.90Å
e4bbsA5[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.6Å
e2e2iA9[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 3.41Å
e3gtgA9[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.78Å
e3gtjA9[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.40Å
e3gtkA9[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.80Å
e1k83A9[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 2.8Å
e1twaA9[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 3.2Å
e2b63A6[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 3.8Å
e2b8kA6[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 4.15Å
e4by1A6[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.60Å
e3gtmA6[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.80Å
e3h3vB6[B:1103-1131,B:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 4.000Å
e3i4mA6[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.7Å
e3i4nA6[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.9Å
e3j0kA6[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II largest subunit ; ELECTRON MICROSCOPY
e3po3A6[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.3Å
e2r7zA6[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.80Å
e2vumA6[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.40Å
e1y1vA6[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II largest subunit ; X-RAY DIFFRACTION
e1y1yA6[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II largest subunit ; X-RAY DIFFRACTION 4Å
e1y77A6[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 4.5Å
e2e2jA5[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II largest subunit ; X-RAY DIFFRACTION 3.5Å
e3gtlA5[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.38Å
e3gtoA5[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 4.0Å
e3gtpA5[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.90Å
e3gtqA5[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.80Å
e3m3yA5[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.18Å
e3m4oA5[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.57Å
e2nvqA5[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II largest subunit ; X-RAY DIFFRACTION 2.90Å
e2nvxA5[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 3.6Å
e1r9tA5[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 3.5Å
e3rzdA5[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.300Å
e3rzoA5[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.000Å
e3s14A5[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 2.850Å
e3s15A5[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.300Å
e3s16A5[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.24Å
e3s17A5[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.200Å
e3s1mA5[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.130Å
e3s1nA5[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.100Å
e3s1qA5[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.300Å
e3s1rA5[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.200Å
e3s2dA5[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.200Å
e3s2hA5[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.300Å
e1sfoA5[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 3.61Å
e1twcA9[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 3.0Å
e1twgA9[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 3.3Å
e1twhA9[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 3.4Å
e2e2hA6[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 3.95Å
e3fkiA6[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.88Å
e1i3qA6[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 3.1Å
e3k7aA6[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; X-RAY DIFFRACTION 3.8Å
e1nikA6[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
RPB1 ; X-RAY DIFFRACTION 4.100Å
e1nt9A6[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT ; X-RAY DIFFRACTION 4.2Å
e1pqvA6[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II largest subunit ; X-RAY DIFFRACTION 3.80Å
e4v1mA1[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; ELECTRON MICROSCOPY
e4v1nA1[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; ELECTRON MICROSCOPY
e4v1oA9[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; ELECTRON MICROSCOPY
e4x67A8[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 4.100Å
e4x6aA9[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.950Å
e4y52A2[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.500Å
e4y7nA3[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.300Å
e5c3eA3[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.400Å
e5c44A9[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.852Å
e5c4aA3[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 4.2Å
e5c4xA2[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 4.0Å
e5c4jA6[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 4.0Å
e5fmfA7[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 ; ELECTRON MICROSCOPY
e5svaA5[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; ELECTRON MICROSCOPY
e5u5qA7[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.80Å
e5x50A1[A:1105-1133,A:1245-1303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase subunit ; X-RAY DIFFRACTION 4.290Å
e5x4zA1[A:1105-1133,A:1245-1303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase subunit ; X-RAY DIFFRACTION 7.800Å
e5x4zM7[M:1105-1133,M:1245-1303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase subunit ; X-RAY DIFFRACTION 7.800Å
e5x51A9[A:1105-1133,A:1245-1303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase subunit ; X-RAY DIFFRACTION 7.000Å
e5x51M8[M:1105-1133,M:1245-1303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase subunit ; X-RAY DIFFRACTION 7.000Å
e5xogA4[A:1105-1133,A:1245-1303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase subunit ; X-RAY DIFFRACTION 3.000Å
e5xonA3[A:1105-1133,A:1245-1303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase subunit ; ELECTRON MICROSCOPY
e5ot2A3[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.2Å
e5vvsA4[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; ELECTRON MICROSCOPY
e5vvrA8[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; ELECTRON MICROSCOPY
e6bloA8[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.4Å
e5w4uA3[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.6Å
e6a5lA7[A:1105-1133,A:1245-1303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase subunit ; ELECTRON MICROSCOPY
e5w51A3[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.4Å
e6a5oA2[A:1105-1133,A:1245-1303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase subunit ; ELECTRON MICROSCOPY
e6a5pA5[A:1105-1133,A:1245-1303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase subunit ; ELECTRON MICROSCOPY
e6a5rA3[A:1105-1133,A:1245-1303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase subunit ; ELECTRON MICROSCOPY
e6a5tA9[A:1105-1133,A:1245-1303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase subunit ; ELECTRON MICROSCOPY
e6a5uA8[A:1105-1133,A:1245-1303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase subunit ; ELECTRON MICROSCOPY
e6a5vA9[A:1105-1133,A:1245-1303] Image Pymol Jmol Links: PDB, SCOP, CATH
e6i84A4[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; ELECTRON MICROSCOPY
e6ir9A3[A:1105-1133,A:1245-1303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase subunit ; ELECTRON MICROSCOPY
e6j4wA2[A:1105-1133,A:1245-1303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase subunit ; ELECTRON MICROSCOPY
e6j4xA7[A:1105-1133,A:1245-1303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase subunit ; ELECTRON MICROSCOPY
e6j4yA8[A:1105-1133,A:1245-1303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase subunit ; ELECTRON MICROSCOPY
e6j4zA2[A:1105-1133,A:1245-1303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase subunit ; ELECTRON MICROSCOPY
e6j50A7[A:1105-1133,A:1245-1303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase subunit ; ELECTRON MICROSCOPY
e6j51A1[A:1105-1133,A:1245-1303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase subunit ; ELECTRON MICROSCOPY
e6inqA9[A:1105-1133,A:1245-1303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase subunit ; ELECTRON MICROSCOPY
e6o6cA1[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; ELECTRON MICROSCOPY
e6upxA3[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.300Å
e6upyA6[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.290Å
e6upzA9[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.020Å
e6uq0A3[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.560Å
e6uq1A2[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.540Å
e6uq2A8[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.090Å
e6uq3A9[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.470Å
e7kedA9[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.550Å
e7o4iA1[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; ELECTRON MICROSCOPY
e7nkyA9[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; ELECTRON MICROSCOPY
e7keeA1[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.410Å
e7kefA5[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 3.890Å
e7o4jA2[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; ELECTRON MICROSCOPY
e7o72A2[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; ELECTRON MICROSCOPY
e7o73A7[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; ELECTRON MICROSCOPY
e7o75A7[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; ELECTRON MICROSCOPY
e7rimA5[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; X-RAY DIFFRACTION 2.9Å
e7meia4[a:1103-1131,a:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase subunit ; ELECTRON MICROSCOPY
e7meiA2[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase subunit ; ELECTRON MICROSCOPY
e7mk9A4[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase subunit ; ELECTRON MICROSCOPY
e7mkaa7[a:1103-1131,a:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase subunit ; ELECTRON MICROSCOPY
e7xn7A6[A:1105-1133,A:1245-1303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase subunit ; ELECTRON MICROSCOPY
e7xseA5[A:1105-1133,A:1245-1303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase subunit ; ELECTRON MICROSCOPY
e7xsxA1[A:1105-1133,A:1245-1303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase subunit ; ELECTRON MICROSCOPY
e7xszA8[A:1105-1133,A:1245-1303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase subunit ; ELECTRON MICROSCOPY
e7xtdA4[A:1105-1133,A:1245-1303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase subunit ; ELECTRON MICROSCOPY
e7xt7A7[A:1105-1133,A:1245-1303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase subunit ; ELECTRON MICROSCOPY
e7xtiA9[A:1105-1133,A:1245-1303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase subunit ; ELECTRON MICROSCOPY
e7ui9A7[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; ELECTRON MICROSCOPY
e7uifA7[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; ELECTRON MICROSCOPY
e7uioAA2[AA:1103-1131,AA:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; ELECTRON MICROSCOPY
e7uioBA1[BA:1103-1131,BA:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; ELECTRON MICROSCOPY
e7zs9A1[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; ELECTRON MICROSCOPY
e7zsaA9[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; ELECTRON MICROSCOPY
e7zsbA3[A:1103-1131,A:1243-1300] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase II subunit RPB1 ; ELECTRON MICROSCOPY
e8h0vA7[A:1105-1133,A:1245-1303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase subunit ; ELECTRON MICROSCOPY
e8h0wA4[A:1105-1133,A:1245-1303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
DNA-directed RNA polymerase subunit ; ELECTRON MICROSCOPY
e7wbvA2[A:1105-1133,A:1245-1303] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI
; ELECTRON MICROSCOPY
a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers
a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers
a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers
a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain
a/b barrelsrepeating beta-alpha units form a barrel
a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers
mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions
few secondary structure elementsstabilized by cofactors or disulfides
extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes