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X - Possible homology level

H - Homology level

T - Topology level

F - Family level

* - Provisional representative


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Evolutionary classification of protein domain structures

alpha arraysalpha-helix arrays with mainly perpendicular helices

alpha bundlesalpha-helix bundles with mainly parallel helices

alpha superhelicesrepeating alpha-helix hairpins form a superhelix

alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain

alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix

beta barrelssingle beta-sheet folded upon itself to form a barrel

beta meanderssingle beta-sheet with mainly meander topology

beta sandwichestwo beta-sheets stacked together to form a sandwich

beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain

beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander

a+b two layersone alpha-helix layer and one beta-sheet layer

a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers

a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers

a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers

a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain

a/b barrelsrepeating beta-alpha units form a barrel

a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers

mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions

few secondary structure elementsstabilized by cofactors or disulfides

X: Rubredoxin-like

binds one zinc with two CxxC motifs on two beta-hairpins

X: Ribosomal protein L36
H: Ribosomal protein L36
T: Ribosomal protein L36
F: Ribosomal_L36

PF00444

Representatives:

e2zjr41[4:1-37] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S RIBOSOMAL PROTEIN L36 ; X-RAY DIFFRACTION 2.91Å

e7u2i191[19:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ligands: MG,ZN ; X-RAY DIFFRACTION 2.550Å

e7u2i291[29:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ligands: MG,ZN ; X-RAY DIFFRACTION 2.550Å

e7u2j191[19:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ligands: MG,ZN ; X-RAY DIFFRACTION 2.550Å

e7u2j291[29:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ligands: ZN ; X-RAY DIFFRACTION 2.550Å

e7qh4f1[f:2-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ELECTRON MICROSCOPY

e7qv241[4:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ELECTRON MICROSCOPY

e7qv341[4:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ELECTRON MICROSCOPY

e7ood21[2:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ligands: ZN ; ELECTRON MICROSCOPY

e7p6z21[2:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ligands: ZN ; ELECTRON MICROSCOPY

e7pah21[2:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ELECTRON MICROSCOPY

e7pai21[2:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ELECTRON MICROSCOPY

e7paj21[2:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ELECTRON MICROSCOPY

e7pak21[2:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ELECTRON MICROSCOPY

e7pal21[2:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ELECTRON MICROSCOPY

e7pam21[2:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ELECTRON MICROSCOPY

e7pan21[2:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ELECTRON MICROSCOPY

e7pao21[2:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ELECTRON MICROSCOPY

e7paq21[2:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ELECTRON MICROSCOPY

e7par21[2:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ELECTRON MICROSCOPY

e7pas21[2:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ELECTRON MICROSCOPY

e7pat21[2:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ELECTRON MICROSCOPY

e7pau21[2:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ELECTRON MICROSCOPY

e7ph921[2:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ELECTRON MICROSCOPY

e7pha21[2:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ELECTRON MICROSCOPY

e7phb21[2:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ELECTRON MICROSCOPY

e7phc21[2:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ELECTRON MICROSCOPY

e7pi821[2:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ELECTRON MICROSCOPY

e7pi921[2:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ELECTRON MICROSCOPY

e7pia21[2:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ELECTRON MICROSCOPY

e7pib21[2:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ELECTRON MICROSCOPY

e7pic21[2:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ELECTRON MICROSCOPY

e7pio21[2:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ELECTRON MICROSCOPY

e7pip21[2:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ELECTRON MICROSCOPY

e7piq21[2:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ELECTRON MICROSCOPY

e7pir21[2:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ELECTRON MICROSCOPY

e7pis21[2:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ELECTRON MICROSCOPY

e7pit21[2:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ELECTRON MICROSCOPY

e7ttuR1[R:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ELECTRON MICROSCOPY

e7ttwR1[R:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ELECTRON MICROSCOPY

e7sfr41[4:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ligands: ZN ; ELECTRON MICROSCOPY

e8a22AD1[AD:7-52] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

bL36m ; ligands: ZN ; ELECTRON MICROSCOPY

e8apnAD1[AD:7-52] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

bL36m ; ligands: ZN ; ELECTRON MICROSCOPY

e8cvj191[19:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ligands: MG,ZN ; X-RAY DIFFRACTION 2.400Å

e8cvj291[29:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ligands: MG,ZN ; X-RAY DIFFRACTION 2.400Å

e8cvk191[19:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ligands: MG,ZN ; X-RAY DIFFRACTION 2.500Å

e8cvk291[29:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ligands: MG,ZN ; X-RAY DIFFRACTION 2.500Å

e8cvl191[19:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ligands: MG,ZN ; X-RAY DIFFRACTION 2.300Å

e8cvl291[29:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ligands: MG,ZN ; X-RAY DIFFRACTION 2.300Å

e8ekb191[19:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ligands: MG,ZN ; X-RAY DIFFRACTION 2.700Å

e8ekb291[29:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ligands: ZN ; X-RAY DIFFRACTION 2.700Å

e8a5791[9:1-36] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ligands: ZN ; ELECTRON MICROSCOPY

e8a5i91[9:1-36] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ligands: ZN ; ELECTRON MICROSCOPY

e8a6391[9:1-36] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ligands: ZN ; ELECTRON MICROSCOPY

e8akn31[3:1-38] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ligands: ZN ; ELECTRON MICROSCOPY

e8am931[3:1-38] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ligands: ZN ; ELECTRON MICROSCOPY

e8ana31[3:1-38] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ligands: ZN ; ELECTRON MICROSCOPY

e8ap431[3:1-38] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ELECTRON MICROSCOPY

e8aye31[3:1-38] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ligands: ZN ; ELECTRON MICROSCOPY

e8b0x31[3:1-38] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ligands: ZN ; ELECTRON MICROSCOPY

e8b7ym1[m:1-38] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ligands: ZN ; ELECTRON MICROSCOPY

e8eiu31[3:1-38] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ligands: MET,ZN ; ELECTRON MICROSCOPY

e8ekc81[8:1-38] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ligands: MG,ZN ; ELECTRON MICROSCOPY

e7m5df1[f:1-38] Image Pymol Jmol Links: PDB, SCOP, CATH

50S ribosomal protein L36 ; ELECTRON MICROSCOPY

e7q4kB41[B4:1-38] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ELECTRON MICROSCOPY

e7qq3m1[m:1-38] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ligands: ZN ; ELECTRON MICROSCOPY

e7ylam1[m:1-38] Image Pymol Jmol Links: PDB, SCOP, CATH

50S ribosomal protein L36 ; ligands: ZN ; ELECTRON MICROSCOPY

e8a3l31[3:1-38] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ligands: ZN ; ELECTRON MICROSCOPY

e8fizBP1[BP:1-38] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ELECTRON MICROSCOPY

e8g6w31[3:1-38] Image Pymol Jmol Links: PDB, SCOP, CATH

50S ribosomal protein L36 ; ligands: ZN ; ELECTRON MICROSCOPY

e8g6x31[3:1-38] Image Pymol Jmol Links: PDB, SCOP, CATH

50S ribosomal protein L36 ; ligands: ZN ; ELECTRON MICROSCOPY

e8g6y31[3:1-38] Image Pymol Jmol Links: PDB, SCOP, CATH

50S ribosomal protein L36 ; ligands: ZN ; ELECTRON MICROSCOPY

e7uvv31[3:1-38] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ligands: ZN ; ELECTRON MICROSCOPY

e7uvw31[3:1-38] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ligands: ZN ; ELECTRON MICROSCOPY

e7uvx31[3:1-38] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ligands: ZN ; ELECTRON MICROSCOPY

e7uvy31[3:1-38] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ligands: ZN ; ELECTRON MICROSCOPY

e7uvz31[3:1-38] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ligands: ZN ; ELECTRON MICROSCOPY

e7uw131[3:1-38] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ligands: ZN ; ELECTRON MICROSCOPY

e7ztaL3611[L361:1-38] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ligands: CYS,GLN,ZN ; ELECTRON MICROSCOPY

e7qi641[4:66-103] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

39S ribosomal protein L36, mitochondrial ; ligands: VAL,ZN ; ELECTRON MICROSCOPY

e8fomR91[R9:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; X-RAY DIFFRACTION 3.400Å

e8fomY91[Y9:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; X-RAY DIFFRACTION 3.400Å

e8fonR91[R9:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ligands: MG,ZN ; X-RAY DIFFRACTION 3.500Å

e8fonY91[Y9:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ligands: MG,ZN ; X-RAY DIFFRACTION 3.500Å

e8crx31[3:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ELECTRON MICROSCOPY

e8cvm31[3:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ELECTRON MICROSCOPY

e8fr8F1[F:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH

50S ribosomal protein L36 ; ELECTRON MICROSCOPY

e7xamf1[f:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH

50S ribosomal protein L36 ; ligands: ZN ; ELECTRON MICROSCOPY

e7y41f1[f:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH

50S ribosomal protein L36 ; ligands: MG,ZN ; ELECTRON MICROSCOPY

e8buu41[4:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

50S ribosomal protein L36 ; ligands: ZN ; ELECTRON MICROSCOPY

e8cgk31[3:1-38] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ligands: ZN ; ELECTRON MICROSCOPY

e8cam31[3:1-38] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ligands: MG,ZN ; ELECTRON MICROSCOPY

e8cgv31[3:1-38] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ligands: MG,ZN ; ELECTRON MICROSCOPY

e8syl81[8:1-38] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ligands: ZN ; ELECTRON MICROSCOPY

e8bf7e1[e:1-38] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ELECTRON MICROSCOPY

e7y7c31[3:1-38] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ELECTRON MICROSCOPY

e8oirBl1[Bl:66-103] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

39S ribosomal protein L36, mitochondrial ; ligands: MET,MG,VAL,ZN ; ELECTRON MICROSCOPY

e7qi541[4:66-103] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

39S ribosomal protein L36, mitochondrial ; ligands: VAL,ZN ; ELECTRON MICROSCOPY

e8any41[4:66-103] Image Pymol Jmol Links: PDB, SCOP, CATH

39S ribosomal protein L36, mitochondrial ; ligands: VAL,ZN ; ELECTRON MICROSCOPY

e8fc1191[19:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ligands: ARG,MG,ZN ; X-RAY DIFFRACTION 2.500Å

e8t8b191[19:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ligands: ARG,MG,ZN ; X-RAY DIFFRACTION 2.650Å

e8fc4191[19:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ligands: ARG,MG,ZN ; X-RAY DIFFRACTION 2.450Å

e8ev6191[19:1-37] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ligands: MG,ZN ; X-RAY DIFFRACTION 2.946Å

e8oinBl1[Bl:63-100] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Ribosomal protein ; ligands: PHE,ZN ; ELECTRON MICROSCOPY

e8apoAD1[AD:7-52] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ligands: ZN ; ELECTRON MICROSCOPY

Previous
F: Unmapped domains

Pseudo group of domains that do not map to PFam family profiles. Domains inside should not be considered as in one family.

X: RING/U-box-like

binds two zincs. one in the same way as rubredoxin, probably related to rubredoxin. the other in a similar way as glucocorticoid receptor

X: Glucocorticoid receptor-like

binds zinc with one beta-hairpin and one helix, the helix binds DNA

extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes