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X - Possible homology level

H - Homology level

T - Topology level

F - Family level

* - Provisional representative


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Evolutionary classification of protein domain structures

alpha arraysalpha-helix arrays with mainly perpendicular helices

alpha bundlesalpha-helix bundles with mainly parallel helices

alpha superhelicesrepeating alpha-helix hairpins form a superhelix

alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain

alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix

beta barrelssingle beta-sheet folded upon itself to form a barrel

beta meanderssingle beta-sheet with mainly meander topology

beta sandwichestwo beta-sheets stacked together to form a sandwich

beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain

beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander

a+b two layersone alpha-helix layer and one beta-sheet layer

X: L9 N-domain-like
H: GINS/PriA/YqbF domain
T: GINS/PriA/YqbF domain
F: GINS_N

PF22466

Representatives:

e2e9xC2[C:1001-1087] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

GINS complex subunit 3 ; X-RAY DIFFRACTION 1.99Å

e8q6oI2[I:2-81] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ELECTRON MICROSCOPY

e8b9bE2[E:1-73] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ELECTRON MICROSCOPY

e8b9cE1[E:1-73] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ELECTRON MICROSCOPY

e2e9xG2[G:1-87] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

GINS complex subunit 3 ; X-RAY DIFFRACTION 1.99Å

e2q9qD2[D:2-87] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

GINS complex subunit 3 ; X-RAY DIFFRACTION 2.36Å

e2q9qH2[H:2-87] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

GINS complex subunit 3 ; X-RAY DIFFRACTION 2.36Å

e2ehoD2[D:3-87] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

GINS COMPLEX SUBUNIT 3 ; ligands: SO4 ; X-RAY DIFFRACTION 3.0Å

e2ehoH2[H:3-87] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

GINS COMPLEX SUBUNIT 3 ; ligands: SO4 ; X-RAY DIFFRACTION 3.0Å

e2ehoL2[L:3-87] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

GINS COMPLEX SUBUNIT 3 ; ligands: SO4 ; X-RAY DIFFRACTION 3.0Å

e3jc5C1[C:3-73] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA replication complex GINS protein PSF3 ; ELECTRON MICROSCOPY

e3jc6C1[C:3-73] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA replication complex GINS protein PSF3 ; ELECTRON MICROSCOPY

e3jc7C1[C:3-73] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA replication complex GINS protein PSF3 ; ELECTRON MICROSCOPY

e5u8sC2[C:3-73] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA replication complex GINS protein PSF3 ; ELECTRON MICROSCOPY

e5u8tC1[C:3-73] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA replication complex GINS protein PSF3 ; ELECTRON MICROSCOPY

e6hv9E2[E:3-73] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA replication complex GINS protein PSF3 ; ELECTRON MICROSCOPY

e6rawM1[M:8-72] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

AT18545p ; ELECTRON MICROSCOPY

e6razM2[M:8-72] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

AT18545p ; ELECTRON MICROSCOPY

e6raxM1[M:8-72] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

AT18545p ; ELECTRON MICROSCOPY

e6rayM1[M:8-72] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

AT18545p ; ELECTRON MICROSCOPY

e6ptjC2[C:3-73] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA replication complex GINS protein PSF3 ; ELECTRON MICROSCOPY

e6ptnc1[c:3-73] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA replication complex GINS protein PSF3 ; ELECTRON MICROSCOPY

e6ptnC2[C:3-73] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA replication complex GINS protein PSF3 ; ELECTRON MICROSCOPY

e6ptop2[p:3-73] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA replication complex GINS protein PSF3 ; ELECTRON MICROSCOPY

e6ptoC2[C:3-73] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA replication complex GINS protein PSF3 ; ELECTRON MICROSCOPY

e6ptoc2[c:3-73] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA replication complex GINS protein PSF3 ; ELECTRON MICROSCOPY

e6u0mC1[C:3-73] Image Pymol Jmol Links: PDB, SCOP, CATHDOI

DNA replication complex GINS protein PSF3 ; ELECTRON MICROSCOPY

e6sklC2[C:-4-73] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA replication complex GINS protein PSF3 ; ELECTRON MICROSCOPY

e6xtxC2[C:3-87] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA replication complex GINS protein PSF3 ; ELECTRON MICROSCOPY

e6xtyC1[C:3-87] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA replication complex GINS protein PSF3 ; ELECTRON MICROSCOPY

e7pfoF2[F:2-87] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA replication complex GINS protein PSF3 ; ELECTRON MICROSCOPY

e7ploF2[F:2-87] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA replication complex GINS protein PSF3 ; ELECTRON MICROSCOPY

e7pmkC2[C:2-75] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA replication complex GINS protein PSF3 ; ELECTRON MICROSCOPY

e7pmnC2[C:2-75] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA replication complex GINS protein PSF3 ; ELECTRON MICROSCOPY

e7qhsC2[C:1-73] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA replication complex GINS protein PSF3 ; ELECTRON MICROSCOPY

e7z13C1[C:1-73] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA replication complex GINS protein PSF3 ; ELECTRON MICROSCOPY

e7z13J2[J:1-73] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DNA replication complex GINS protein PSF3 ; ELECTRON MICROSCOPY

e8b9dF2[F:5-87] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ELECTRON MICROSCOPY

e8q6oO1[O:2-81] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ELECTRON MICROSCOPY

e8b9aE2[E:1-73] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ELECTRON MICROSCOPY

F: Unmapped domains

Pseudo group of domains that do not map to PFam family profiles. Domains inside should not be considered as in one family.

X: LuxS, MPP, ThrRS/AlaRS common domain

looks like an elaborated ferredoxin

X: ClpS-like

contains a HTH motif

a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers

a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers

a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers

a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain

a/b barrelsrepeating beta-alpha units form a barrel

a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers

mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions

few secondary structure elementsstabilized by cofactors or disulfides

extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes