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X - Possible homology level

H - Homology level

T - Topology level

F - Family level

* - Provisional representative


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Evolutionary classification of protein domain structures

alpha arraysalpha-helix arrays with mainly perpendicular helices

X: Histone-like
H: Histone-related
T: AAA+ ATPase lid domain
F: AAA_6

PF12774 CL0023

Representatives:

e4ai6A5[A:1928-2027] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

GLUTATHIONE S-TRANSFERASE CLASS-MU 26 KDA ISOZYME, DYNEIN HEAVY CHAIN CYTOPLASMIC ; X-RAY DIFFRACTION 3.4Å

e4rh7A3[A:1824-1933] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Green fluorescent protein/Cytoplasmic dynein 2 heavy chain 1 ; ligands: AOV ; X-RAY DIFFRACTION 3.4Å

e3vkhA2[A:2107-2232] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DYNEIN HEAVY CHAIN, CYTOPLASMIC ; ligands: ADP ; X-RAY DIFFRACTION 3.8Å

e7z8hA6[A:2048-2174] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Cytoplasmic dynein 1 heavy chain 1 ; ligands: ADP ; ELECTRON MICROSCOPY

e8fd6A14[A:593-719] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ligands: ADP,VO4 ; ELECTRON MICROSCOPY

e8fdtA14[A:593-719] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ligands: ADP,VO4 ; ELECTRON MICROSCOPY

e3vkgA12[A:2107-2232] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Dynein heavy chain, cytoplasmic ; ligands: ADP ; X-RAY DIFFRACTION 2.0Å

e3vkhB13[B:2107-2232] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

DYNEIN HEAVY CHAIN, CYTOPLASMIC ; ligands: ADP ; X-RAY DIFFRACTION 3.8Å

e3vkgB13[B:2107-2232] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Dynein heavy chain, cytoplasmic ; ligands: ADP ; X-RAY DIFFRACTION 2.0Å

e5nugA10[A:2048-2174] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Cytoplasmic dynein 1 heavy chain 1 ; ligands: ADP ; ELECTRON MICROSCOPY

e5nugB1[B:2048-2174] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Cytoplasmic dynein 1 heavy chain 1 ; ligands: ADP ; ELECTRON MICROSCOPY

e4w8fB3[B:1928-2024] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Dynein heavy chain lysozyme chimera ; ligands: ANP ; X-RAY DIFFRACTION 3.54Å

e7mi6A13[A:1928-2027] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Fusion protein of Dynein and Endolysin ; ELECTRON MICROSCOPY

e7mi1A2[A:1928-2025] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Chimera protein of Dynein and Endolysin ; X-RAY DIFFRACTION 4.5Å

e7mgmA10[A:1928-2027] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

dynein AAA3-WalkerB mutant (E2488Q) ; ligands: ATP ; ELECTRON MICROSCOPY

e8dyuA12[A:2048-2174] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Cytoplasmic dynein 1 heavy chain 1 ; ligands: ADP ; ELECTRON MICROSCOPY

e8dyvA12[A:2048-2174] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Cytoplasmic dynein 1 heavy chain 1 ; ligands: ADP ; ELECTRON MICROSCOPY

e8fcyA14[A:593-719] Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

; ligands: ADP ; ELECTRON MICROSCOPY

e3j67A3[A:1928-2027] nonrep Image Pymol Jmol Links: PDB, SCOP, CATH, PubMed, DOI

Dynein motor domain ; ELECTRON MICROSCOPY

F: Unmapped domains

Pseudo group of domains that do not map to PFam family profiles. Domains inside should not be considered as in one family.

alpha bundlesalpha-helix bundles with mainly parallel helices

alpha superhelicesrepeating alpha-helix hairpins form a superhelix

alpha duplicates or obligate multimersalpha duplicates or monomers associate together to form a compact domain

alpha complex topologyalpha domain with complex and unique topology that cannot be described as array or bundle or superhelix

beta barrelssingle beta-sheet folded upon itself to form a barrel

beta meanderssingle beta-sheet with mainly meander topology

beta sandwichestwo beta-sheets stacked together to form a sandwich

beta duplicates or obligate multimersbeta duplicates or monomers associate together to form a compact domain

beta complex topologybeta domains with complex and unique topology that cannot be described as barrel or sandwich or meander

a+b two layersone alpha-helix layer and one beta-sheet layer

a+b three layersone mainly antiparallel beta-sheet layer sandwiched between two alpha-helix layers

a+b four layerstwo beta-sheet layers sandwiched between two alpha-helix layers

a+b complex topologyalpha and beta domain with complex and unique topology that cannot be described in layers

a+b duplicates or obligate multimersalpha and beta duplicates or monomers associated together to form a compact domain

a/b barrelsrepeating beta-alpha units form a barrel

a/b three-layered sandwichesrepeating beta-alpha units form a sandwich with a mainly parallel beta-sheet layer stacked between two alpha-helix layers

mixed a+b and a/balpha and beta domain consists of both a+b and a/b regions

few secondary structure elementsstabilized by cofactors or disulfides

extended segmentsextended, non-globular segments, frequently bind to other proteins to form complexes