ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4k3mA1 - ECOD Domain | ECOD

ECOD/Domains/e4k3mA1

e4k3mA1

UID: 001013958

PDB

Range: A:1-111
PDB: 4K3M chain A(all domains)
UniProt: P0A988 (all domains)
Gene: dnaN

Molecule: DNA polymerase III subunit beta

3D Structure

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Related Domains

Browse other domains in DNA_pol3_beta →

Classification

AArchitecturea+b two layers(a.11)

XX-groupDNA clamp(227)

HH-groupDNA clamp(227.1)

TT-groupDNA clamp(227.1.1)

FFamilyDNA_pol3_beta(227.1.1.3)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal

+ 2 additives (Triethylene glycol, DI(HYDROXYETHYL)ETHER)

Triethylene glycolPGE
DrugBank DB02327
DI(HYDROXYETHYL)ETHERPEG

Pfam Families

PF00712DNA_pol3_beta

DNA polymerase III beta subunit, N-terminal domain

ClanCL0060DNA_clamp

External Links

ECOD PDB View: 4K3M RCSB PDB: 4K3M PDBe: 4K3M UniProt: P0A988

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.