ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4hmaB1 - ECOD Domain | ECOD

ECOD/Domains/e4hmaB1

e4hmaB1

UID: 001014457

PDB

Range: B:110-269
PDB: 4HMA chain B(all domains)
UniProt: P14780 (all domains)
Gene: MMP9

Molecule: Matrix metalloproteinase-9

3D Structure

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Related Domains

Browse other domains in Peptidase_M10 →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupZincin-like(2498)

HH-groupMetalloproteases ("zincins") catalytic domain(2498.1)

TT-groupMetalloproteases ("zincins") catalytic domain(2498.1.1)

FFamilyPeptidase_M10(2498.1.1.1)

Ligands

in contact, ≤ 4 Å

(S)-propane-1,2-diolPGO
drugDrugBank DB04349
N,N'-bis(2-[(biphenyl-4ylsulfonyl)[(2R)-1-hydroxy-3-methyl-1-oxobutan-2-yl]-amino]ethyl)benzene-1,3-dicarboxamide0ZD
Calcium ion

Pfam Families

PF00413Peptidase_M10

Matrixin

ClanCL0126Peptidase_MA

External Links

ECOD PDB View: 4HMA RCSB PDB: 4HMA PDBe: 4HMA UniProt: P14780

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

Zinc ionZN

metal

+ 3 additives (Glycerin, D-Malic acid, DI(HYDROXYETHYL)ETHER)

GlycerinGOL
DrugBank DB09462
D-Malic acidMLT
DrugBank DB03499
DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.