ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4kl4A1 - ECOD Domain | ECOD

ECOD/Domains/e4kl4A1

e4kl4A1

UID: 001014780

PDB

Range: A:1-246
PDB: 4KL4 chain A(all domains)
UniProt: D9J2T9 (all domains)
Gene: RIP

Molecule: rRNA N-glycosidase

3D Structure

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Related Domains

Browse other domains in RIP →

Classification

AArchitecturea+b two layers(a.11)

XX-groupRIP/Polo-box domain(292)

HH-groupRibosome inactivating proteins (RIP)(292.1)

TT-groupRibosome inactivating proteins (RIP)(292.1.1)

FFamilyRIP(292.1.1.1)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141

+ 2 additives (Glycerin, DI(HYDROXYETHYL)ETHER)

GlycerinGOL
DrugBank DB09462

Pfam Families

Ribosome inactivating protein

External Links

ECOD PDB View: 4KL4 RCSB PDB: 4KL4 PDBe: 4KL4 UniProt: D9J2T9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.