ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1vg9H1 - ECOD Domain | ECOD

ECOD/Domains/e1vg9H1

e1vg9H1

UID: 000101675

PDB

Range: H:6-176
PDB: 1VG9 chain H(all domains)
UniProt: P09527 (all domains)
Gene: Rab7a

Molecule: Ras-related protein Rab-7

3D Structure

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Related Domains

Browse other domains in Ras →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyRas(2004.1.1.19)

Ligands

in contact, ≤ 4 Å

Guanosine-5'-DiphosphateGDP
drugDrugBank DB04315
Potassium ionK
metal
Magnesium ion

Pfam Families

Ras family

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 1VG9 RCSB PDB: 1VG9 PDBe: 1VG9 UniProt: P09527

Downloads

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metal

+ 1 additive (Heptaethylene glycol)

Heptaethylene glycolP33
DrugBank DB03394

Shown in the structure viewer. Drug annotations from DrugDomain.