ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e4lg1B1 - ECOD Domain | ECOD

ECOD/Domains/e4lg1B1

e4lg1B1

UID: 001070243

PDB

Range: B:14-228
PDB: 4LG1 chain B(all domains)
UniProt: Q9H867 (all domains)
Gene: VCPKMT

Molecule: Protein-lysine methyltransferase METTL21D

3D Structure

Loading viewer...

Related Domains

Browse other domains in Methyltransf_16 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyMethyltransf_16(2003.1.5.73)

Ligands

in contact, ≤ 4 Å

AdemetionineSAM
drugDrugBank DB00118
Unknown atom or ionUNX

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOL

Pfam Families

PF10294Methyltransf_16

Lysine methyltransferase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 4LG1 RCSB PDB: 4LG1 PDBe: 4LG1 UniProt: Q9H867

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Shown in the structure viewer. Drug annotations from DrugDomain.