ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4makA1 - ECOD Domain | ECOD

ECOD/Domains/e4makA1

e4makA1

UID: 001096325

RepresentativePDB

Range: A:2-74
PDB: 4MAK chain A(all domains)
UniProt: P45956 (all domains)
Gene: ygbF

Molecule: CRISPR-associated endoribonuclease Cas2

3D Structure

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Related Domains

Browse other domains in Cas_Cas2CT1978 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupCRISPR associated protein Cas2-like(304.56)

TT-groupCRISPR associated protein Cas2-like(304.56.1)

FFamilyCas_Cas2CT1978(304.56.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (DI(HYDROXYETHYL)ETHER)

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF09707Cas_Cas2CT1978

CRISPR-associated protein (Cas_Cas2CT1978)

ClanCL0728Cas2

External Links

ECOD PDB View: 4MAK RCSB PDB: 4MAK PDBe: 4MAK UniProt: P45956

Downloads

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