ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4l6dE1 - ECOD Domain | ECOD

ECOD/Domains/e4l6dE1

e4l6dE1

UID: 001111397

PDB

Range: E:0-334
PDB: 4L6D chain E(all domains)
UniProt: Q8RJ47 (all domains)
Gene: ligW

Molecule: 5-carboxyvanillate decarboxylase

3D Structure

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Related Domains

Browse other domains in Amidohydro_2 →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyAmidohydro_2(2002.1.1.134)

Ligands

in contact, ≤ 4 Å

Vanillic acidVNL
drugDrugBank DB02130
MANGANESE (II) IONMN
metal

+ 2 additives (HEPES, DI(HYDROXYETHYL)ETHER)

Pfam Families

PF04909Amidohydro_2

Amidohydrolase

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 4L6D RCSB PDB: 4L6D PDBe: 4L6D UniProt: Q8RJ47

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

HEPESEPE

DrugBank DB16872

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.