ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2guiA1 - ECOD Domain | ECOD

ECOD/Domains/e2guiA1

e2guiA1

UID: 000011145

RepresentativePDB

Range: A:7-180
PDB: 2GUI chain A(all domains)
UniProt: P03007 (all domains)
Gene: dnaQ

Molecule: DNA polymerase III epsilon subunit

3D Structure

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Related Domains

Browse other domains in RNase_T →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyRNase_T(2484.1.1.13)

Ligands

in contact, ≤ 4 Å

Uridine monophosphateU5P
drugDrugBank DB03685
MANGANESE (II) IONMN
metal

+ 2 additives (1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER)

Pfam Families

PF00929RNase_T

Exonuclease

ClanCL0219RNase_H

External Links

ECOD PDB View: 2GUI RCSB PDB: 2GUI PDBe: 2GUI UniProt: P03007

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,2-ETHANEDIOLEDO

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.