ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4lpsB1 - ECOD Domain | ECOD

ECOD/Domains/e4lpsB1

e4lpsB1

UID: 001126086

PDB

Range: B:28-242
PDB: 4LPS chain B(all domains)
UniProt: O25560 (all domains)
Gene: hypB

Molecule: Hydrogenase/urease nickel incorporation protein HypB

3D Structure

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Related Domains

Browse other domains in cobW →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilycobW(2004.1.1.88)

Ligands

in contact, ≤ 4 Å

Guanosine-5'-DiphosphateGDP
drugDrugBank DB04315
Magnesium ionMG
metal
NICKEL (II) ION

Pfam Families

CobW/HypB/UreG, nucleotide-binding domain

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 4LPS RCSB PDB: 4LPS PDBe: 4LPS UniProt: O25560

Downloads

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metal

+ 3 additives (Glycerin, Malonate Ion, Phosphate ion)

GlycerinGOL
DrugBank DB09462
Malonate IonMLI
DrugBank DB02201
Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.