ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4lngB1 - ECOD Domain | ECOD

ECOD/Domains/e4lngB1

e4lngB1

UID: 001142901

PDB

Range: B:69-519
PDB: 4LNG chain B(all domains)
UniProt: Q4WPS9 (all domains)
Gene: AFUA_4G10330

Molecule: CaaX farnesyltransferase beta subunit Ram1

3D Structure

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Related Domains

Browse other domains in Prenyltrans →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupalpha/alpha toroid(109.2)

TT-groupalpha/alpha toroid(109.2.1)

FFamilyPrenyltrans(109.2.1.1)

Ligands

in contact, ≤ 4 Å

Farnesyl diphosphateFPP
drugDrugBank DB07780
TipifarnibJAN
drugDrugBank DB04960

Pfam Families

PF00432Prenyltrans

Prenyltransferase alpha-alpha toroid domain

ClanCL00596_Hairpin

External Links

ECOD PDB View: 4LNG RCSB PDB: 4LNG PDBe: 4LNG UniProt: Q4WPS9

Downloads

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Potassium ion

K

metal

Zinc ionZN

metal

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.