ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4mbgA1 - ECOD Domain | ECOD

ECOD/Domains/e4mbgA1

e4mbgA1

UID: 001143027

PDB

Range: A:3-349
PDB: 4MBG chain A(all domains)
UniProt: Q4WP27 (all domains)
Gene: AFUA_4G07800

Molecule: CaaX farnesyltransferase alpha subunit Ram2

3D Structure

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Related Domains

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Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilyPPTA(109.4.1.18)

Ligands

in contact, ≤ 4 Å

Farnesyl diphosphateFPP
drugDrugBank DB07780
Potassium ionK
metalwithin 5 Å only

+ 1 additive (1,2-ETHANEDIOL)

Pfam Families

Protein prenyltransferase alpha subunit repeat

ClanCL0020TPR

External Links

ECOD PDB View: 4MBG RCSB PDB: 4MBG PDBe: 4MBG UniProt: Q4WP27

Downloads

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1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.