ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1vj7B3 - ECOD Domain | ECOD

ECOD/Domains/e1vj7B3

e1vj7B3

UID: 001179395

PDB

Range: B:5-112,B:132-196
PDB: 1VJ7 chain B(all domains)
UniProt: Q54089 (all domains)
Gene: relA

Molecule: Bifunctional RELA/SPOT

3D Structure

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Related Domains

Browse other domains in HD_4 →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupPDEase-like(131)

HH-groupHD-domain/PDEase-like(131.1)

TT-groupHD-domain/PDEase-like(131.1.1)

FFamilyHD_4(131.1.1.12)

Ligands

in contact, ≤ 4 Å

Guanosine-5'-DiphosphateGDP
drugDrugBank DB04315
Guanosine 5'-diphosphate 2':3'-cyclic monophosphateGPX
drugDrugBank DB02836

Pfam Families

HD domain

ClanCL0237HD_PDEase

External Links

ECOD PDB View: 1VJ7 RCSB PDB: 1VJ7 PDBe: 1VJ7 UniProt: Q54089

Downloads

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MANGANESE (II) IONMN

metal

Shown in the structure viewer. Drug annotations from DrugDomain.