ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4ijdB3 - ECOD Domain | ECOD

ECOD/Domains/e4ijdB3

e4ijdB3

UID: 001184117

RepresentativePDB

Range: B:379-411
PDB: 4IJD chain B(all domains)
UniProt: Q9NQV7 (all domains)
Gene: PRDM9

Molecule: Histone-lysine N-methyltransferase PRDM9

3D Structure

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Related Domains

Browse other domains in zf-C2H2_5 →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupbeta-beta-alpha zinc fingers(386)

HH-groupbeta-beta-alpha zinc fingers(386.1)

TT-groupbeta-beta-alpha zinc fingers(386.1.1)

FFamilyzf-C2H2_5(386.1.1.52)

Ligands

in contact, ≤ 4 Å

Unknown atom or ionUNX
Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF21225zf-C2H2_5

C2H2-type zinc finger

ClanCL0361C2H2-zf

External Links

ECOD PDB View: 4IJD RCSB PDB: 4IJD PDBe: 4IJD UniProt: Q9NQV7

Downloads

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