ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3vm6C2 - ECOD Domain | ECOD

ECOD/Domains/e3vm6C2

e3vm6C2

UID: 001189918

PDB

Range: C:111-322
PDB: 3VM6 chain C(all domains)
UniProt: Q5JFM9 (all domains)
Gene: TK0185

Molecule: Translation initiation factor eIF-2B, delta subunit

3D Structure

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Related Domains

Browse other domains in IF-2B →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupNagB/RpiA/CoA transferase-like(2003.1.7)

FFamilyIF-2B(2003.1.7.2)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Magnesium ionMG
metal
1,5-di-O-phosphono-alpha-D-ribofuranoseRI2

Pfam Families

Initiation factor 2 subunit family

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 3VM6 RCSB PDB: 3VM6 PDBe: 3VM6 UniProt: Q5JFM9

Downloads

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+ 1 additive (DI(HYDROXYETHYL)ETHER)

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.