ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2uvfB5 - ECOD Domain | ECOD

ECOD/Domains/e2uvfB5

e2uvfB5

UID: 001222072

PDB

Range: B:145-607
PDB: 2UVF chain B(all domains)
UniProt: O68975 (all domains)

Molecule: EXOPOLYGALACTURONASE

3D Structure

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Related Domains

Browse other domains in Glyco_hydro_28,Pectate_lyase_3 →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupSingle-stranded right-handed beta-helix(207)

HH-groupPectin lyase-like(207.2)

TT-groupPectin lyase-like(207.2.1)

FFamilyGlyco_hydro_28,Pectate_lyase_3(207.2.1.2)

Ligands

in contact, ≤ 4 Å

NICKEL (II) IONNI
metal

+ 3 additives (Acetate, Sulfate ion, DI(HYDROXYETHYL)ETHER)

AcetateACT
DrugBank DB14511
Sulfate ionSO4

Pfam Families

PF00295Glyco_hydro_28

Glycosyl hydrolases family 28

ClanCL0268Pec_lyase-like

PF12708Pect-lyase_RHGA_epim

Rhamnogalacturonase A/epimerase, pectate lyase-like

ClanCL0268Pec_lyase-like

External Links

ECOD PDB View: 2UVF RCSB PDB: 2UVF PDBe: 2UVF UniProt: O68975

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.