ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3rlgA2 - ECOD Domain | ECOD

ECOD/Domains/e3rlgA2

e3rlgA2

UID: 001240413

RepresentativePDB

Range: A:2-284
PDB: 3RLG chain A(all domains)
UniProt: P0CE80 (all domains)

Molecule: Sphingomyelin phosphodiesterase D LiSicTox-alphaIA1a

3D Structure

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Related Domains

Browse other domains in GDPD_2, SPH →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyGDPD_2, SPH(2002.1.1.269)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal

+ 3 additives (Triethylene glycol, 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER)

Triethylene glycolPGE
DrugBank DB02327
1,2-ETHANEDIOL

Pfam Families

Glycerophosphoryl diester phosphodiesterase family

ClanCL0036TIM_barrel

Dermonecrotic toxin SPH

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 3RLG RCSB PDB: 3RLG PDBe: 3RLG UniProt: P0CE80

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.