ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3pkjD2 - ECOD Domain | ECOD

ECOD/Domains/e3pkjD2

e3pkjD2

UID: 001246982

PDB

Range: D:14-132,D:184-295
PDB: 3PKJ chain D(all domains)
UniProt: Q8N6T7 (all domains)
Gene: SIRT6

Molecule: NAD-dependent deacetylase sirtuin-6

3D Structure

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Related Domains

Browse other domains in SIR2 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupDHS-like NAD/FAD-binding domain(2003.1.4)

FFamilySIR2(2003.1.4.5)

Ligands

in contact, ≤ 4 Å

[(2R,3S,4R,5R)-4-(acetylamino)-3,5-dihydroxytetrahydrofuran-2-yl]methyl [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphateA2N
Unknown atom or ionUNX

+ 1 additive (Sulfate ion)

Sulfate ion

Pfam Families

Sir2 family

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 3PKJ RCSB PDB: 3PKJ PDBe: 3PKJ UniProt: Q8N6T7

Downloads

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DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.