ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2wdaA4 - ECOD Domain | ECOD

ECOD/Domains/e2wdaA4

e2wdaA4

UID: 001271489

PDB

Range: A:394-650
PDB: 2WDA chain A(all domains)
UniProt: O86516 (all domains)
Gene: SCO5534

Molecule: PUTATIVE SECRETED LYASE

3D Structure

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Related Domains

Browse other domains in Lyase_8 →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupGlycosyl hydrolase domain-like(12)

HH-groupsupersandwich(12.3)

TT-groupsupersandwich(12.3.1)

FFamilyLyase_8(12.3.1.5)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives (Formic acid, Glycerin, DI(HYDROXYETHYL)ETHER)

Formic acidFMT
DrugBank DB01942
GlycerinGOL
DrugBank DB09462
DI(HYDROXYETHYL)ETHER

Pfam Families

PF02278Lyase_8

Polysaccharide lyase family 8, super-sandwich domain

ClanCL0103Gal_mutarotase

External Links

ECOD PDB View: 2WDA RCSB PDB: 2WDA PDBe: 2WDA UniProt: O86516

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.