ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4n96A5 - ECOD Domain | ECOD

ECOD/Domains/e4n96A5

e4n96A5

UID: 001275926

PDB

Range: A:123-244
PDB: 4N96 chain A(all domains)
UniProt: P0A988 (all domains)
Gene: dnaN

Molecule: DNA polymerase III subunit beta

3D Structure

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Related Domains

Browse other domains in DNA_pol3_beta_2 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupDNA clamp(227)

HH-groupDNA clamp(227.1)

TT-groupDNA clamp(227.1.1)

FFamilyDNA_pol3_beta_2(227.1.1.7)

Ligands

in contact, ≤ 4 Å

6-Nitroindazole6NI
drugDrugBank DB03100
Calcium ionCA
metal
Chloride ionCL

Pfam Families

PF02767DNA_pol3_beta_2

DNA polymerase III beta subunit, central domain

ClanCL0060DNA_clamp

External Links

ECOD PDB View: 4N96 RCSB PDB: 4N96 PDBe: 4N96 UniProt: P0A988

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 1 additive (DI(HYDROXYETHYL)ETHER)

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.