ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3grjB3 - ECOD Domain | ECOD

ECOD/Domains/e3grjB3

e3grjB3

UID: 001278784

PDB

Range: B:4-60,B:225-361
PDB: 3GRJ chain B(all domains)
UniProt: P00811 (all domains)
Gene: ampC

Molecule: Beta-lactamase

3D Structure

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Related Domains

Browse other domains in Beta-lactamase →

Classification

AArchitecturea+b three layers(a.12)

XX-groupProfilin-like(223)

HH-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3)

TT-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3.1)

FFamilyBeta-lactamase(223.3.1.1)

Ligands

in contact, ≤ 4 Å

2-phenyl-1H-imidazole-4-carboxylic acidG14
drugDrugBank DB07803

+ 3 additives (Dimethyl sulfoxide, DI(HYDROXYETHYL)ETHER, Phosphate ion)

Dimethyl sulfoxideDMS
DI(HYDROXYETHYL)ETHERPEG

Pfam Families

PF00144Beta-lactamase

Beta-lactamase

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 3GRJ RCSB PDB: 3GRJ PDBe: 3GRJ UniProt: P00811

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Phosphate ionPO4

Shown in the structure viewer. Drug annotations from DrugDomain.