ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4cncB1 - ECOD Domain | ECOD

ECOD/Domains/e4cncB1

e4cncB1

UID: 001286561

PDB

Range: B:60-344
PDB: 4CNC chain B(all domains)
UniProt: Q13641 (all domains)
Gene: TPBG

Molecule: TROPHOBLAST GLYCOPROTEIN

3D Structure

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Related Domains

Browse other domains in LRR_1, LRRNT, LRRCT, LRR_8 →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupSingle-stranded right-handed beta-helix(207)

HH-groupLeucine-rich repeats(207.1)

TT-groupLeucine-rich repeats(207.1.1)

FFamilyLRR_1, LRRNT, LRRCT, LRR_8(207.1.1.164)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141
Sodium ionNA
metal

+ 3 additives (Glycerin, Sulfate ion, DI(HYDROXYETHYL)ETHER)

GlycerinGOL

Pfam Families

Leucine Rich Repeat

ClanCL0022LRR

Leucine rich repeat N-terminal domain

Leucine rich repeat C-terminal domain

Leucine rich repeat

ClanCL0022LRR

External Links

ECOD PDB View: 4CNC RCSB PDB: 4CNC PDBe: 4CNC UniProt: Q13641

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

Sulfate ionSO4

DrugBank DB14546

DI(HYDROXYETHYL)ETHERPEG

Shown in the structure viewer. Drug annotations from DrugDomain.