ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3wmmD1 - ECOD Domain | ECOD

ECOD/Domains/e3wmmD1

e3wmmD1

UID: 001286972

PDB

Range: D:2-61
PDB: 3WMM chain D(all domains)
UniProt: D2Z0P2 (all domains)
Gene: pufA

Molecule: LH1 alpha polypeptide

3D Structure

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Related Domains

Browse other domains in LHC →

Classification

AArchitectureextended segments(a.20)

XX-groupBacterial light-harvesting complex subunits(5074)

HH-groupBacterial light-harvesting complex subunits(5074.1)

TT-groupBacterial light-harvesting complex subunits(5074.1.1)

FFamilyLHC(5074.1.1.1)

Ligands

in contact, ≤ 4 Å

Bacteriochlorophyll ABCL
drugDrugBank DB01853
Calcium ionCA
metal
Spirilloxanthin

Pfam Families

Antenna complex alpha/beta subunit

External Links

ECOD PDB View: 3WMM RCSB PDB: 3WMM PDBe: 3WMM UniProt: D2Z0P2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

MENAQUINONE 8MQ8

within 5 Å only

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.